Wall clock time and date at job start Wed Apr 15 2020 11:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86802 * 119.99848 * 2 1 4 4 H 1.48506 * 109.47171 * 273.83912 * 3 2 1 5 5 H 1.48500 * 109.46958 * 33.83730 * 3 2 1 6 6 H 1.48496 * 109.47594 * 153.83888 * 3 2 1 7 7 C 1.38948 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00409 * 337.76196 * 7 2 1 9 9 N 1.37095 * 119.99861 * 157.75425 * 7 2 1 10 10 C 1.34780 * 120.00495 * 320.78755 * 9 7 2 11 11 O 1.21288 * 119.99724 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00229 * 179.97438 * 10 9 7 13 13 H 1.09003 * 109.38244 * 60.21295 * 12 10 9 14 14 C 1.52589 * 109.38313 * 179.97438 * 12 10 9 15 15 C 1.52590 * 110.63815 * 190.04209 * 14 12 10 16 16 C 1.53042 * 109.98688 * 290.01102 * 15 14 12 17 17 S 1.81676 * 108.99416 * 63.65355 * 16 15 14 18 18 O 1.42095 * 108.66217 * 60.02865 * 17 16 15 19 19 O 1.42103 * 108.66043 * 191.27747 * 17 16 15 20 20 C 1.53330 * 109.26103 * 300.54055 * 12 10 9 21 21 C 1.46507 * 119.99757 * 140.78250 * 9 7 2 22 22 C 1.52992 * 117.49998 * 7.09797 * 21 9 7 23 23 C 1.53000 * 117.49926 * 298.43458 * 21 9 7 24 24 H 0.97001 * 119.99844 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.24054 * 69.74344 * 14 12 10 26 26 H 1.08997 * 109.21344 * 310.31816 * 14 12 10 27 27 H 1.09004 * 109.38110 * 169.86173 * 15 14 12 28 28 H 1.08998 * 109.30490 * 50.12547 * 15 14 12 29 29 H 1.08999 * 109.55191 * 303.79805 * 16 15 14 30 30 H 1.09000 * 109.62813 * 183.55634 * 16 15 14 31 31 H 1.08999 * 109.72329 * 56.42891 * 20 12 10 32 32 H 1.08997 * 109.51161 * 296.06076 * 20 12 10 33 33 H 1.09002 * 115.54758 * 152.77201 * 21 9 7 34 34 H 1.09004 * 117.49646 * 0.02562 * 22 21 9 35 35 H 1.08993 * 117.50068 * 145.01775 * 22 21 9 36 36 H 1.09000 * 117.50150 * 214.97705 * 23 21 9 37 37 H 1.09001 * 117.49901 * 0.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4144 2.0934 -1.3970 5 1 1.4884 2.6279 0.7796 6 1 3.5839 1.4183 0.6173 7 6 2.0089 -1.2033 0.0005 8 1 1.5293 -2.1037 0.3549 9 7 3.3033 -1.2476 -0.4489 10 6 3.6686 -0.5219 -1.5244 11 8 2.8519 0.1700 -2.0948 12 6 5.0916 -0.5702 -2.0180 13 1 5.3437 -1.5938 -2.2953 14 6 5.2353 0.3346 -3.2383 15 6 6.5888 0.1212 -3.9097 16 6 7.7060 0.6748 -3.0222 17 16 7.7483 -0.2662 -1.4687 18 8 7.9971 -1.6321 -1.7712 19 8 8.5979 0.4089 -0.5512 20 6 6.0308 -0.1005 -0.9008 21 6 4.2897 -2.0837 0.2399 22 6 3.7813 -3.0090 1.3472 23 6 4.5907 -1.7598 1.7046 24 1 -0.4850 0.8401 0.0004 25 1 5.1493 1.3752 -2.9259 26 1 4.4415 0.1063 -3.9496 27 1 6.6013 0.6361 -4.8703 28 1 6.7480 -0.9453 -4.0688 29 1 7.5137 1.7259 -2.8069 30 1 8.6631 0.5766 -3.5344 31 1 5.8797 -0.7126 -0.0116 32 1 5.8236 0.9435 -0.6660 33 1 5.1145 -2.4418 -0.3761 34 1 2.7129 -2.9960 1.5629 35 1 4.2719 -3.9757 1.4599 36 1 5.6134 -1.9053 2.0523 37 1 4.0546 -0.9249 2.1559 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593417695.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:07 Heat of formation + Delta-G solvation = -60.584563 kcal Electronic energy + Delta-G solvation = -22520.048955 eV Core-core repulsion = 19198.499665 eV Total energy + Delta-G solvation = -3321.549291 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.78304 -37.27123 -36.80892 -36.06822 -35.99462 -33.01926 -32.26276 -31.21874 -27.68246 -25.66499 -23.87507 -22.14645 -21.64130 -20.98649 -19.26554 -18.88705 -17.46291 -16.68976 -16.43728 -16.10859 -15.69969 -15.47309 -14.98061 -14.32670 -14.17355 -13.85333 -13.62207 -13.24614 -13.10705 -12.93374 -12.52858 -12.17875 -12.05239 -11.94179 -11.74332 -11.43883 -11.36716 -11.25963 -10.90946 -10.86296 -10.66575 -10.44058 -10.33667 -10.08747 -10.05251 -9.68928 -8.60180 -8.56731 -7.60225 -6.29432 -4.02371 -0.02355 2.58482 3.15038 3.36484 3.54634 3.56865 3.64054 3.90477 4.12400 4.37529 4.45420 4.52021 4.56657 4.67236 4.79977 4.90967 5.03162 5.16692 5.24787 5.34042 5.44129 5.48028 5.57718 5.58761 5.67003 5.78973 5.86653 6.07426 6.16388 6.23408 6.35152 6.57388 6.75699 7.73699 7.84548 8.66483 8.78854 9.32860 9.68804 10.75092 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.020250 B = 0.007674 C = 0.006575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.363962 B = 3647.575963 C = 4257.267118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.095 3.905 3 Si 0.904 3.096 4 H -0.249 1.249 5 H -0.309 1.309 6 H -0.278 1.278 7 C -0.354 4.354 8 H 0.099 0.901 9 N -0.426 5.426 10 C 0.456 3.544 11 O -0.536 6.536 12 C -0.089 4.089 13 H 0.107 0.893 14 C -0.123 4.123 15 C -0.108 4.108 16 C -0.604 4.604 17 S 2.411 3.589 18 O -0.937 6.937 19 O -0.947 6.947 20 C -0.608 4.608 21 C 0.053 3.947 22 C -0.170 4.170 23 C -0.206 4.206 24 H 0.273 0.727 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.151 0.849 32 H 0.136 0.864 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.324 -0.207 -3.962 14.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.115 4.115 3 Si 0.735 3.265 4 H -0.175 1.175 5 H -0.239 1.239 6 H -0.204 1.204 7 C -0.479 4.479 8 H 0.116 0.884 9 N -0.146 5.146 10 C 0.245 3.755 11 O -0.419 6.419 12 C -0.112 4.112 13 H 0.124 0.876 14 C -0.160 4.160 15 C -0.146 4.146 16 C -0.733 4.733 17 S 2.594 3.406 18 O -0.935 6.935 19 O -0.944 6.944 20 C -0.737 4.737 21 C -0.053 4.053 22 C -0.208 4.208 23 C -0.245 4.245 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.117 0.883 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.151 0.849 30 H 0.149 0.851 31 H 0.169 0.831 32 H 0.154 0.846 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 14.446 -0.231 -3.852 14.952 hybrid contribution -0.221 1.294 -0.034 1.313 sum 14.224 1.062 -3.887 14.784 Atomic orbital electron populations 1.69765 1.06909 1.28328 1.44273 1.25263 0.94858 0.99395 0.92013 0.86527 0.79275 0.82318 0.78392 1.17470 1.23865 1.20365 1.18782 0.85300 0.96588 1.47241 0.88358 1.43095 1.08440 1.39868 1.23154 1.19756 0.88595 0.85330 0.81855 1.90556 1.52232 1.41585 1.57512 1.21031 0.95120 1.01648 0.93385 0.87551 1.21540 0.97145 1.00558 0.96799 1.21319 0.91691 1.02413 0.99185 1.30237 1.07921 1.14794 1.20394 1.08225 0.78006 0.76454 0.77877 1.93570 1.83885 1.31462 1.84538 1.93578 1.63414 1.76327 1.61106 1.30642 1.20628 1.12553 1.09896 1.21969 0.95434 0.99363 0.88552 1.23174 1.01983 0.93405 1.02202 1.23400 1.00458 1.00993 0.99616 0.91704 0.90458 0.88321 0.89369 0.89704 0.84912 0.85051 0.83115 0.84586 0.86608 0.87008 0.89131 0.89233 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.57 13.96 55.50 0.77 -24.79 16 2 C 0.09 2.70 4.78 -17.47 -0.08 2.61 16 3 Si 0.90 23.16 24.86 -169.99 -4.23 18.94 16 4 H -0.25 -6.56 6.15 56.52 0.35 -6.21 16 5 H -0.31 -7.91 7.11 56.52 0.40 -7.51 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.35 -9.50 8.81 -14.94 -0.13 -9.64 16 8 H 0.10 2.76 6.76 -52.49 -0.35 2.40 16 9 N -0.43 -9.68 2.55 -107.73 -0.28 -9.95 16 10 C 0.46 10.02 5.33 -10.98 -0.06 9.96 16 11 O -0.54 -13.79 10.92 5.55 0.06 -13.73 16 12 C -0.09 -1.41 1.58 -91.81 -0.15 -1.55 16 13 H 0.11 1.47 7.44 -51.93 -0.39 1.08 16 14 C -0.12 -1.65 4.38 -27.15 -0.12 -1.77 16 15 C -0.11 -1.05 5.73 -26.92 -0.15 -1.20 16 16 C -0.60 -5.42 6.35 37.18 0.24 -5.18 16 17 S 2.41 29.35 5.30 -107.50 -0.57 28.78 16 18 O -0.94 -13.50 17.94 -57.82 -1.04 -14.54 16 19 O -0.95 -14.27 18.10 -57.82 -1.05 -15.32 16 20 C -0.61 -8.55 5.26 37.33 0.20 -8.35 16 21 C 0.05 0.95 4.28 -67.93 -0.29 0.66 16 22 C -0.17 -2.82 9.82 -26.70 -0.26 -3.08 16 23 C -0.21 -3.39 9.28 -26.69 -0.25 -3.63 16 24 H 0.27 7.68 8.31 -40.82 -0.34 7.35 16 25 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 26 H 0.10 1.43 7.73 -51.93 -0.40 1.03 16 27 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 0.77 8.01 -51.93 -0.42 0.36 16 29 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.15 2.17 4.20 -51.93 -0.22 1.95 16 32 H 0.14 1.83 8.14 -51.93 -0.42 1.41 16 33 H 0.12 1.76 6.31 -51.93 -0.33 1.44 16 34 H 0.11 2.10 6.40 -51.93 -0.33 1.77 16 35 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 LS Contribution 299.83 15.07 4.52 4.52 Total: -1.00 -35.68 299.83 -7.86 -43.54 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -5.01 Total: 3.73 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -1.06 Total: -21.18 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.50 Total: -34.74 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -2.02 Total: -43.59 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -4.23 Total: 18.94 kcal Atomic # 16 Polarization: 29.35 SS G_CDS: -0.57 Total: 28.78 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -35.68 -7.86 -43.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593417695.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.042 kcal (2) G-P(sol) polarization free energy of solvation -35.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds