Wall clock time and date at job start Wed Apr 15 2020 11:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86802 * 119.99848 * 2 1 4 4 H 1.48506 * 109.47171 * 273.83912 * 3 2 1 5 5 H 1.48500 * 109.46958 * 33.83730 * 3 2 1 6 6 H 1.48496 * 109.47594 * 153.83888 * 3 2 1 7 7 C 1.38948 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00409 * 337.76196 * 7 2 1 9 9 N 1.37095 * 119.99861 * 157.75425 * 7 2 1 10 10 C 1.34780 * 120.00495 * 320.78755 * 9 7 2 11 11 O 1.21288 * 119.99724 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00229 * 179.97438 * 10 9 7 13 13 H 1.09003 * 109.38244 * 60.21295 * 12 10 9 14 14 C 1.52589 * 109.38313 * 179.97438 * 12 10 9 15 15 C 1.52590 * 110.63815 * 190.04209 * 14 12 10 16 16 C 1.53042 * 109.98688 * 290.01102 * 15 14 12 17 17 S 1.81676 * 108.99416 * 63.65355 * 16 15 14 18 18 O 1.42095 * 108.66217 * 60.02865 * 17 16 15 19 19 O 1.42103 * 108.66043 * 191.27747 * 17 16 15 20 20 C 1.53330 * 109.26103 * 300.54055 * 12 10 9 21 21 C 1.46507 * 119.99757 * 140.78250 * 9 7 2 22 22 C 1.52992 * 117.49998 * 7.09797 * 21 9 7 23 23 C 1.53000 * 117.49926 * 298.43458 * 21 9 7 24 24 H 0.97001 * 119.99844 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.24054 * 69.74344 * 14 12 10 26 26 H 1.08997 * 109.21344 * 310.31816 * 14 12 10 27 27 H 1.09004 * 109.38110 * 169.86173 * 15 14 12 28 28 H 1.08998 * 109.30490 * 50.12547 * 15 14 12 29 29 H 1.08999 * 109.55191 * 303.79805 * 16 15 14 30 30 H 1.09000 * 109.62813 * 183.55634 * 16 15 14 31 31 H 1.08999 * 109.72329 * 56.42891 * 20 12 10 32 32 H 1.08997 * 109.51161 * 296.06076 * 20 12 10 33 33 H 1.09002 * 115.54758 * 152.77201 * 21 9 7 34 34 H 1.09004 * 117.49646 * 0.02562 * 22 21 9 35 35 H 1.08993 * 117.50068 * 145.01775 * 22 21 9 36 36 H 1.09000 * 117.50150 * 214.97705 * 23 21 9 37 37 H 1.09001 * 117.49901 * 0.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4144 2.0934 -1.3970 5 1 1.4884 2.6279 0.7796 6 1 3.5839 1.4183 0.6173 7 6 2.0089 -1.2033 0.0005 8 1 1.5293 -2.1037 0.3549 9 7 3.3033 -1.2476 -0.4489 10 6 3.6686 -0.5219 -1.5244 11 8 2.8519 0.1700 -2.0948 12 6 5.0916 -0.5702 -2.0180 13 1 5.3437 -1.5938 -2.2953 14 6 5.2353 0.3346 -3.2383 15 6 6.5888 0.1212 -3.9097 16 6 7.7060 0.6748 -3.0222 17 16 7.7483 -0.2662 -1.4687 18 8 7.9971 -1.6321 -1.7712 19 8 8.5979 0.4089 -0.5512 20 6 6.0308 -0.1005 -0.9008 21 6 4.2897 -2.0837 0.2399 22 6 3.7813 -3.0090 1.3472 23 6 4.5907 -1.7598 1.7046 24 1 -0.4850 0.8401 0.0004 25 1 5.1493 1.3752 -2.9259 26 1 4.4415 0.1063 -3.9496 27 1 6.6013 0.6361 -4.8703 28 1 6.7480 -0.9453 -4.0688 29 1 7.5137 1.7259 -2.8069 30 1 8.6631 0.5766 -3.5344 31 1 5.8797 -0.7126 -0.0116 32 1 5.8236 0.9435 -0.6660 33 1 5.1145 -2.4418 -0.3761 34 1 2.7129 -2.9960 1.5629 35 1 4.2719 -3.9757 1.4599 36 1 5.6134 -1.9053 2.0523 37 1 4.0546 -0.9249 2.1559 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593417695.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:06 Heat of formation + Delta-G solvation = -88.348563 kcal Electronic energy + Delta-G solvation = -22521.252893 eV Core-core repulsion = 19198.499665 eV Total energy + Delta-G solvation = -3322.753228 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.38452 -38.45543 -38.10825 -37.27327 -37.07918 -34.92780 -33.66478 -32.74777 -28.64271 -27.45994 -25.15126 -23.53662 -22.93363 -22.31806 -20.85991 -19.84125 -19.03345 -18.17304 -17.55068 -17.39182 -17.14876 -16.66580 -16.20395 -15.86429 -15.44346 -15.30229 -14.93834 -14.90836 -14.53723 -14.15383 -13.89276 -13.54751 -13.23835 -13.14138 -13.09342 -12.82681 -12.56462 -12.41135 -12.31097 -12.15648 -12.03269 -11.88270 -11.84282 -11.62030 -11.28518 -11.14647 -10.73029 -10.29536 -9.43644 -8.45350 -6.15965 -0.94987 1.17380 1.30022 1.45878 1.66294 1.88299 2.38772 2.55303 2.67924 2.89199 2.93690 3.18632 3.52769 3.55035 3.67064 3.78728 3.90228 3.95183 4.06863 4.14466 4.22015 4.33353 4.45380 4.64943 4.72091 4.81188 4.86697 4.90934 5.08597 5.18069 5.20581 5.34663 5.38740 5.66438 5.82175 6.71036 6.86286 7.32315 7.83401 8.62695 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.020250 B = 0.007674 C = 0.006575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.363962 B = 3647.575963 C = 4257.267118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.044 3.956 3 Si 0.952 3.048 4 H -0.262 1.262 5 H -0.313 1.313 6 H -0.257 1.257 7 C -0.346 4.346 8 H 0.072 0.928 9 N -0.445 5.445 10 C 0.451 3.549 11 O -0.580 6.580 12 C -0.083 4.083 13 H 0.129 0.871 14 C -0.125 4.125 15 C -0.103 4.103 16 C -0.583 4.583 17 S 2.434 3.566 18 O -0.958 6.958 19 O -0.976 6.976 20 C -0.623 4.623 21 C 0.035 3.965 22 C -0.168 4.168 23 C -0.194 4.194 24 H 0.272 0.728 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.117 0.883 28 H 0.096 0.904 29 H 0.155 0.845 30 H 0.167 0.833 31 H 0.146 0.854 32 H 0.138 0.862 33 H 0.151 0.849 34 H 0.079 0.921 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.383 -0.169 -5.109 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.161 4.161 3 Si 0.781 3.219 4 H -0.188 1.188 5 H -0.243 1.243 6 H -0.181 1.181 7 C -0.472 4.472 8 H 0.090 0.910 9 N -0.164 5.164 10 C 0.241 3.759 11 O -0.465 6.465 12 C -0.105 4.105 13 H 0.146 0.854 14 C -0.163 4.163 15 C -0.142 4.142 16 C -0.716 4.716 17 S 2.619 3.381 18 O -0.956 6.956 19 O -0.973 6.973 20 C -0.750 4.750 21 C -0.070 4.070 22 C -0.205 4.205 23 C -0.232 4.232 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.100 0.900 27 H 0.135 0.865 28 H 0.114 0.886 29 H 0.173 0.827 30 H 0.184 0.816 31 H 0.164 0.836 32 H 0.156 0.844 33 H 0.168 0.832 34 H 0.097 0.903 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 18.521 -0.235 -4.936 19.168 hybrid contribution -1.447 1.184 0.240 1.885 sum 17.073 0.949 -4.696 17.733 Atomic orbital electron populations 1.69860 1.08217 1.28667 1.47820 1.25934 0.95367 1.02192 0.92570 0.85732 0.79220 0.79402 0.77506 1.18807 1.24337 1.18105 1.18681 0.87506 0.95268 1.45777 0.91007 1.43267 1.07939 1.40961 1.24266 1.20929 0.91034 0.83175 0.80721 1.90515 1.54349 1.43126 1.58495 1.21049 0.90760 1.03883 0.94823 0.85363 1.21590 0.99341 0.99815 0.95574 1.21340 0.89146 1.03754 0.99918 1.30112 1.09505 1.14981 1.16996 1.07542 0.75970 0.76028 0.78601 1.93540 1.83576 1.33393 1.85060 1.93545 1.63470 1.76752 1.63527 1.30761 1.22392 1.12582 1.09295 1.22315 0.95507 0.99583 0.89558 1.23224 1.00661 0.95375 1.01283 1.23449 1.02184 0.99789 0.97788 0.91924 0.90714 0.89951 0.86514 0.88585 0.82685 0.81567 0.83626 0.84375 0.83228 0.90250 0.85258 0.85133 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.98 13.96 21.66 0.30 -56.68 16 2 C 0.04 2.59 4.78 84.93 0.41 3.00 16 3 Si 0.95 49.19 24.86 68.60 1.71 50.90 16 4 H -0.26 -13.93 6.15 99.48 0.61 -13.32 16 5 H -0.31 -16.12 7.11 99.48 0.71 -15.42 16 6 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 7 C -0.35 -19.30 8.81 84.04 0.74 -18.56 16 8 H 0.07 4.28 6.76 -2.91 -0.02 4.26 16 9 N -0.44 -20.24 2.55 -613.14 -1.57 -21.81 16 10 C 0.45 19.63 5.33 87.66 0.47 20.10 16 11 O -0.58 -30.26 10.92 -3.05 -0.03 -30.30 16 12 C -0.08 -2.43 1.58 -11.57 -0.02 -2.45 16 13 H 0.13 3.14 7.44 -2.39 -0.02 3.12 16 14 C -0.13 -3.02 4.38 30.32 0.13 -2.88 16 15 C -0.10 -1.48 5.73 30.47 0.17 -1.31 16 16 C -0.58 -7.13 6.35 72.00 0.46 -6.68 16 17 S 2.43 49.58 5.30 -56.49 -0.30 49.28 16 18 O -0.96 -23.78 17.94 -127.38 -2.28 -26.07 16 19 O -0.98 -26.13 18.10 -127.38 -2.31 -28.44 16 20 C -0.62 -15.76 5.26 72.09 0.38 -15.38 16 21 C 0.03 1.20 4.28 44.99 0.19 1.39 16 22 C -0.17 -5.37 9.82 30.62 0.30 -5.07 16 23 C -0.19 -6.00 9.28 30.62 0.28 -5.72 16 24 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 25 H 0.07 1.82 8.10 -2.39 -0.02 1.80 16 26 H 0.08 2.26 7.73 -2.39 -0.02 2.24 16 27 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.10 1.24 8.01 -2.39 -0.02 1.22 16 29 H 0.16 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.17 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.15 3.79 4.20 -2.39 -0.01 3.78 16 32 H 0.14 3.38 8.14 -2.39 -0.02 3.36 16 33 H 0.15 4.08 6.31 -2.39 -0.02 4.06 16 34 H 0.08 3.08 6.40 -2.38 -0.02 3.07 16 35 H 0.13 3.10 8.14 -2.39 -0.02 3.08 16 36 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 37 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -82.13 299.83 0.02 -82.12 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.98 Total: 14.55 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 3.52 Total: -33.55 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -1.26 Total: -78.49 kcal Atomic # 8 Polarization: -80.18 SS G_CDS: -4.62 Total: -84.80 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 1.71 Total: 50.90 kcal Atomic # 16 Polarization: 49.58 SS G_CDS: -0.30 Total: 49.28 kcal Total: -82.13 0.02 -82.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593417695.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.233 kcal (2) G-P(sol) polarization free energy of solvation -82.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds