Wall clock time and date at job start Wed Apr 15 2020 11:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00321 * 2 1 4 4 H 1.48499 * 109.47315 * 269.99831 * 3 2 1 5 5 H 1.48500 * 109.47117 * 29.99883 * 3 2 1 6 6 H 1.48506 * 109.47257 * 149.99852 * 3 2 1 7 7 C 1.38808 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99611 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99984 * 180.02562 * 7 2 1 10 10 C 1.81001 * 99.99731 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46952 * 179.97438 * 10 9 7 12 12 O 1.21288 * 120.00190 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00192 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00235 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47175 * 180.02562 * 14 13 11 16 16 H 1.09005 * 109.46999 * 304.99868 * 15 14 13 17 17 C 1.50699 * 109.47229 * 65.00148 * 15 14 13 18 18 O 1.20821 * 120.00058 * 120.00068 * 17 15 14 19 19 O 1.34234 * 119.99673 * 299.99548 * 17 15 14 20 20 C 1.52998 * 109.47346 * 185.00052 * 15 14 13 21 21 C 1.53782 * 113.61779 * 179.97438 * 20 15 14 22 22 C 1.53781 * 87.08260 * 219.93457 * 21 20 15 23 23 C 1.53786 * 87.17350 * 25.39213 * 22 21 20 24 24 H 0.97003 * 120.00074 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47197 * 60.00068 * 10 9 7 26 26 H 1.08993 * 109.47179 * 299.99823 * 10 9 7 27 27 H 0.97001 * 119.99341 * 359.97438 * 13 11 10 28 28 H 1.09007 * 109.46940 * 59.99756 * 14 13 11 29 29 H 1.09004 * 109.47190 * 300.00554 * 14 13 11 30 30 H 0.96698 * 116.99766 * 179.97438 * 19 17 15 31 31 H 1.08997 * 112.84789 * 311.19983 * 20 15 14 32 32 H 1.09001 * 113.61250 * 105.38275 * 21 20 15 33 33 H 1.08997 * 113.61225 * 334.48116 * 21 20 15 34 34 H 1.09002 * 113.61445 * 139.98212 * 22 21 20 35 35 H 1.09002 * 113.61408 * 270.79943 * 22 21 20 36 36 H 1.08993 * 113.61491 * 89.15923 * 23 22 21 37 37 H 1.09000 * 113.61138 * 220.06261 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4701 -2.1374 0.0005 9 16 3.7722 -1.2022 0.0012 10 6 4.0864 -2.9847 0.0025 11 6 5.5729 -3.2327 0.0026 12 8 6.3439 -2.2965 0.0024 13 7 6.0455 -4.4949 0.0030 14 6 7.4905 -4.7361 0.0037 15 6 7.7561 -6.2428 0.0034 16 1 7.2383 -6.7031 0.8449 17 6 7.2527 -6.8413 -1.2847 18 8 8.0180 -7.4116 -2.0256 19 8 5.9540 -6.7410 -1.6089 20 6 9.2598 -6.4956 0.1298 21 6 9.6350 -7.9869 0.1399 22 6 10.6684 -7.6389 1.2243 23 6 9.7789 -6.4352 1.5780 24 1 -0.4850 0.8401 -0.0004 25 1 3.6438 -3.4323 -0.8873 26 1 3.6432 -3.4311 0.8926 27 1 5.4288 -5.2436 0.0036 28 1 7.9331 -4.2888 0.8939 29 1 7.9339 -4.2891 -0.8861 30 1 5.6782 -7.1402 -2.4453 31 1 9.8491 -5.9015 -0.5686 32 1 10.0806 -8.3313 -0.7934 33 1 8.8339 -8.6363 0.4927 34 1 10.7342 -8.3817 2.0193 35 1 11.6432 -7.3590 0.8248 36 1 9.0172 -6.6597 2.3246 37 1 10.3405 -5.5288 1.8041 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697981724.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:10 Heat of formation + Delta-G solvation = -120.845821 kcal Electronic energy + Delta-G solvation = -20218.239022 eV Core-core repulsion = 16894.076607 eV Total energy + Delta-G solvation = -3324.162415 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.06947 -39.18668 -38.86452 -36.34326 -35.14129 -32.43904 -31.84380 -29.22530 -26.10856 -25.65024 -25.11654 -24.39222 -21.04057 -20.60319 -19.71017 -18.39455 -17.81769 -17.20782 -16.47053 -16.37485 -15.78859 -15.30416 -15.15444 -15.00239 -14.84061 -13.96082 -13.75663 -13.38290 -13.01542 -12.86885 -12.79211 -12.77289 -12.14945 -12.06916 -11.86094 -11.71342 -11.26931 -11.08805 -11.00775 -10.93365 -10.69937 -10.55341 -10.44158 -9.85406 -9.53133 -9.03605 -8.97841 -8.49632 -6.91477 -6.28798 -4.00368 1.89114 2.65277 2.75948 2.97373 3.27943 3.33862 3.50759 3.63291 4.10961 4.22536 4.26402 4.33460 4.47123 4.58296 4.73367 4.77073 4.82249 5.06359 5.10359 5.28973 5.36427 5.38299 5.40991 5.50600 5.59448 5.65391 5.75274 5.78506 5.85896 6.03339 6.10781 6.22224 6.48176 7.54169 7.66890 7.94347 8.41979 8.48546 9.17471 10.80462 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.034501 B = 0.003167 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.383072 B = 8838.438950 C = 9320.261218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.123 4.123 11 C 0.532 3.468 12 O -0.521 6.521 13 N -0.734 5.734 14 C 0.132 3.868 15 C -0.082 4.082 16 H 0.116 0.884 17 C 0.483 3.517 18 O -0.508 6.508 19 O -0.514 6.514 20 C -0.094 4.094 21 C -0.126 4.126 22 C -0.144 4.144 23 C -0.134 4.134 24 H 0.271 0.729 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.405 0.595 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.413 0.587 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.473 -17.751 1.342 24.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.273 4.273 11 C 0.318 3.682 12 O -0.396 6.396 13 N -0.391 5.391 14 C 0.007 3.993 15 C -0.102 4.102 16 H 0.134 0.866 17 C 0.325 3.675 18 O -0.395 6.395 19 O -0.326 6.326 20 C -0.113 4.113 21 C -0.163 4.163 22 C -0.182 4.182 23 C -0.172 4.172 24 H 0.081 0.919 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.241 0.759 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.272 0.728 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 18.922 -16.066 1.504 24.868 hybrid contribution -1.391 -0.988 -0.674 1.835 sum 17.531 -17.053 0.830 24.471 Atomic orbital electron populations 1.69937 1.05927 1.27762 1.48123 1.24718 0.94451 0.98979 0.93199 0.86731 0.81901 0.83264 0.79927 1.19229 1.19968 1.15896 1.22321 0.88274 0.97528 1.58715 0.89372 1.84785 1.09272 1.00158 1.97433 1.23264 0.93936 1.04252 1.05891 1.20279 0.90644 0.82158 0.75153 1.90704 1.58778 1.42268 1.47845 1.46010 1.06915 1.08502 1.77644 1.21180 0.82749 0.91609 1.03751 1.21467 0.98072 0.96853 0.93788 0.86610 1.23361 0.79817 0.76384 0.87958 1.90716 1.56893 1.40292 1.51627 1.84488 1.27947 1.74681 1.45509 1.22471 0.91374 0.98782 0.98682 1.22857 0.98837 0.95102 0.99532 1.22835 0.98062 0.98227 0.99050 1.23033 0.99555 0.99241 0.95348 0.91947 0.88424 0.88422 0.75858 0.89666 0.91060 0.72784 0.88034 0.90660 0.90501 0.91315 0.90052 0.89670 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.54 13.97 55.49 0.78 -25.76 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.74 27.74 -169.99 -4.72 17.03 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 7 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 8 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 9 S -0.14 -3.60 18.55 -107.50 -1.99 -5.60 16 10 C -0.12 -2.34 6.16 36.01 0.22 -2.12 16 11 C 0.53 9.24 7.85 -10.98 -0.09 9.16 16 12 O -0.52 -11.05 15.86 5.55 0.09 -10.96 16 13 N -0.73 -9.00 5.06 -60.29 -0.31 -9.30 16 14 C 0.13 1.36 5.05 -4.05 -0.02 1.34 16 15 C -0.08 -0.64 2.12 -91.78 -0.19 -0.84 16 16 H 0.12 0.72 7.96 -51.93 -0.41 0.30 16 17 C 0.48 4.44 7.43 36.00 0.27 4.70 16 18 O -0.51 -5.91 15.61 -18.75 -0.29 -6.21 16 19 O -0.51 -3.91 11.42 -39.27 -0.45 -4.35 16 20 C -0.09 -0.70 2.72 -89.71 -0.24 -0.94 16 21 C -0.13 -0.92 6.20 -25.92 -0.16 -1.08 16 22 C -0.14 -0.88 8.08 -25.92 -0.21 -1.09 16 23 C -0.13 -0.83 7.65 -25.82 -0.20 -1.03 16 24 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 26 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 27 H 0.41 4.09 6.95 -40.82 -0.28 3.80 16 28 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.41 1.72 9.10 45.56 0.41 2.14 16 31 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.64 7.97 -51.93 -0.41 0.22 16 33 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.48 7.98 -51.93 -0.41 0.06 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 327.47 15.07 4.93 4.93 Total: -1.00 -35.37 327.47 -6.86 -42.23 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -4.49 Total: 1.83 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -0.41 Total: -3.84 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.47 Total: -35.06 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.65 Total: -21.52 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.72 Total: 17.03 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.37 -6.86 -42.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697981724.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.616 kcal (2) G-P(sol) polarization free energy of solvation -35.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds