Wall clock time and date at job start Wed Apr 15 2020 11:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00321 * 2 1 4 4 H 1.48499 * 109.47315 * 269.99831 * 3 2 1 5 5 H 1.48500 * 109.47117 * 29.99883 * 3 2 1 6 6 H 1.48506 * 109.47257 * 149.99852 * 3 2 1 7 7 C 1.38808 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99611 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99984 * 180.02562 * 7 2 1 10 10 C 1.81001 * 99.99731 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46952 * 179.97438 * 10 9 7 12 12 O 1.21288 * 120.00190 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00192 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00235 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47175 * 180.02562 * 14 13 11 16 16 H 1.09005 * 109.46999 * 304.99868 * 15 14 13 17 17 C 1.50699 * 109.47229 * 65.00148 * 15 14 13 18 18 O 1.20821 * 120.00058 * 120.00068 * 17 15 14 19 19 O 1.34234 * 119.99673 * 299.99548 * 17 15 14 20 20 C 1.52998 * 109.47346 * 185.00052 * 15 14 13 21 21 C 1.53782 * 113.61779 * 179.97438 * 20 15 14 22 22 C 1.53781 * 87.08260 * 219.93457 * 21 20 15 23 23 C 1.53786 * 87.17350 * 25.39213 * 22 21 20 24 24 H 0.97003 * 120.00074 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47197 * 60.00068 * 10 9 7 26 26 H 1.08993 * 109.47179 * 299.99823 * 10 9 7 27 27 H 0.97001 * 119.99341 * 359.97438 * 13 11 10 28 28 H 1.09007 * 109.46940 * 59.99756 * 14 13 11 29 29 H 1.09004 * 109.47190 * 300.00554 * 14 13 11 30 30 H 0.96698 * 116.99766 * 179.97438 * 19 17 15 31 31 H 1.08997 * 112.84789 * 311.19983 * 20 15 14 32 32 H 1.09001 * 113.61250 * 105.38275 * 21 20 15 33 33 H 1.08997 * 113.61225 * 334.48116 * 21 20 15 34 34 H 1.09002 * 113.61445 * 139.98212 * 22 21 20 35 35 H 1.09002 * 113.61408 * 270.79943 * 22 21 20 36 36 H 1.08993 * 113.61491 * 89.15923 * 23 22 21 37 37 H 1.09000 * 113.61138 * 220.06261 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4701 -2.1374 0.0005 9 16 3.7722 -1.2022 0.0012 10 6 4.0864 -2.9847 0.0025 11 6 5.5729 -3.2327 0.0026 12 8 6.3439 -2.2965 0.0024 13 7 6.0455 -4.4949 0.0030 14 6 7.4905 -4.7361 0.0037 15 6 7.7561 -6.2428 0.0034 16 1 7.2383 -6.7031 0.8449 17 6 7.2527 -6.8413 -1.2847 18 8 8.0180 -7.4116 -2.0256 19 8 5.9540 -6.7410 -1.6089 20 6 9.2598 -6.4956 0.1298 21 6 9.6350 -7.9869 0.1399 22 6 10.6684 -7.6389 1.2243 23 6 9.7789 -6.4352 1.5780 24 1 -0.4850 0.8401 -0.0004 25 1 3.6438 -3.4323 -0.8873 26 1 3.6432 -3.4311 0.8926 27 1 5.4288 -5.2436 0.0036 28 1 7.9331 -4.2888 0.8939 29 1 7.9339 -4.2891 -0.8861 30 1 5.6782 -7.1402 -2.4453 31 1 9.8491 -5.9015 -0.5686 32 1 10.0806 -8.3313 -0.7934 33 1 8.8339 -8.6363 0.4927 34 1 10.7342 -8.3817 2.0193 35 1 11.6432 -7.3590 0.8248 36 1 9.0172 -6.6597 2.3246 37 1 10.3405 -5.5288 1.8041 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697981724.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:09 Heat of formation + Delta-G solvation = -146.174977 kcal Electronic energy + Delta-G solvation = -20219.337377 eV Core-core repulsion = 16894.076607 eV Total energy + Delta-G solvation = -3325.260769 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.80089 -40.46699 -39.48101 -37.07269 -36.19213 -34.65831 -32.87761 -30.56455 -27.85645 -26.67925 -25.88007 -25.13298 -21.85725 -21.70061 -20.34111 -19.89844 -19.01420 -17.94032 -17.79936 -17.48341 -17.06742 -16.61509 -16.36648 -16.03402 -15.86143 -15.29889 -14.90018 -14.86651 -14.64526 -13.91926 -13.61869 -13.35229 -13.31805 -13.27774 -12.99381 -12.71841 -12.64886 -12.60469 -12.44517 -11.86621 -11.72071 -11.53842 -11.24083 -11.15834 -11.05037 -10.92029 -10.51380 -10.15519 -8.97625 -8.50238 -6.20596 1.00416 1.17213 1.32722 1.48290 1.57047 1.58760 2.04483 2.21856 2.27177 2.73259 2.88166 3.43075 3.57317 3.72047 3.86257 3.97215 4.03866 4.12206 4.24704 4.26910 4.43200 4.51260 4.66137 4.73331 4.86891 4.92612 4.96548 5.14510 5.19399 5.33048 5.36235 5.59615 5.63141 5.72269 6.13218 6.47010 6.95172 6.98052 7.20741 8.62161 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.034501 B = 0.003167 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.383072 B = 8838.438950 C = 9320.261218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.045 3.955 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.235 1.235 7 C -0.527 4.527 8 H 0.063 0.937 9 S -0.177 6.177 10 C -0.111 4.111 11 C 0.537 3.463 12 O -0.563 6.563 13 N -0.709 5.709 14 C 0.133 3.867 15 C -0.072 4.072 16 H 0.141 0.859 17 C 0.484 3.516 18 O -0.536 6.536 19 O -0.513 6.513 20 C -0.098 4.098 21 C -0.126 4.126 22 C -0.141 4.141 23 C -0.129 4.129 24 H 0.277 0.723 25 H 0.113 0.887 26 H 0.116 0.884 27 H 0.419 0.581 28 H 0.092 0.908 29 H 0.058 0.942 30 H 0.428 0.572 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.504 -18.602 2.049 26.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.161 4.161 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.184 1.184 6 H -0.159 1.159 7 C -0.675 4.675 8 H 0.081 0.919 9 S 0.050 5.950 10 C -0.262 4.262 11 C 0.322 3.678 12 O -0.442 6.442 13 N -0.364 5.364 14 C 0.009 3.991 15 C -0.091 4.091 16 H 0.159 0.841 17 C 0.327 3.673 18 O -0.426 6.426 19 O -0.327 6.327 20 C -0.117 4.117 21 C -0.164 4.164 22 C -0.178 4.178 23 C -0.166 4.166 24 H 0.086 0.914 25 H 0.131 0.869 26 H 0.134 0.866 27 H 0.258 0.742 28 H 0.110 0.890 29 H 0.077 0.923 30 H 0.290 0.710 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 19.935 -16.974 2.205 26.275 hybrid contribution -1.706 -0.913 -0.936 2.150 sum 18.229 -17.887 1.269 25.571 Atomic orbital electron populations 1.70015 1.07325 1.29001 1.49265 1.25570 0.95266 1.02279 0.92951 0.85866 0.80737 0.79601 0.80162 1.18813 1.18430 1.15921 1.22470 0.90283 0.96674 1.58079 0.91889 1.84709 1.06373 1.06329 1.97587 1.23264 0.95891 0.99456 1.07564 1.19923 0.89412 0.83238 0.75221 1.90698 1.59282 1.43857 1.50328 1.45775 1.08269 1.07095 1.75274 1.21275 0.80945 0.93394 1.03511 1.21460 0.98669 0.94876 0.94106 0.84133 1.23588 0.79945 0.75794 0.87956 1.90717 1.57650 1.41686 1.52505 1.84441 1.27100 1.74577 1.46628 1.22483 0.90897 0.98792 0.99506 1.22845 0.99379 0.94930 0.99232 1.22828 0.97795 0.98399 0.98778 1.23046 0.99722 0.99313 0.94564 0.91396 0.86919 0.86614 0.74215 0.89028 0.92312 0.71019 0.89076 0.92342 0.89965 0.90367 0.90031 0.88489 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.68 13.97 21.65 0.30 -55.38 16 2 C 0.04 2.60 5.50 84.86 0.47 3.07 16 3 Si 0.91 44.75 27.74 68.60 1.90 46.65 16 4 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.24 -11.46 6.74 99.48 0.67 -10.79 16 7 C -0.53 -30.41 10.04 67.96 0.68 -29.72 16 8 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 9 S -0.18 -8.79 18.55 -56.49 -1.05 -9.84 16 10 C -0.11 -4.04 6.16 71.24 0.44 -3.61 16 11 C 0.54 17.64 7.85 87.66 0.69 18.33 16 12 O -0.56 -23.25 15.86 -3.05 -0.05 -23.30 16 13 N -0.71 -15.52 5.06 -463.05 -2.34 -17.86 16 14 C 0.13 2.46 5.05 86.38 0.44 2.89 16 15 C -0.07 -0.95 2.12 -11.54 -0.02 -0.97 16 16 H 0.14 1.21 7.96 -2.38 -0.02 1.19 16 17 C 0.48 7.96 7.43 71.24 0.53 8.49 16 18 O -0.54 -11.91 15.61 21.98 0.34 -11.57 16 19 O -0.51 -6.55 11.42 -51.46 -0.59 -7.13 16 20 C -0.10 -1.28 2.72 -10.21 -0.03 -1.31 16 21 C -0.13 -1.66 6.20 31.12 0.19 -1.46 16 22 C -0.14 -1.44 8.08 31.12 0.25 -1.19 16 23 C -0.13 -1.29 7.65 31.18 0.24 -1.05 16 24 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 25 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 26 H 0.12 3.83 8.14 -2.40 -0.02 3.81 16 27 H 0.42 7.05 6.95 -92.71 -0.64 6.40 16 28 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.43 2.65 9.10 -74.06 -0.67 1.98 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 0.97 7.97 -2.39 -0.02 0.95 16 33 H 0.08 0.98 8.10 -2.39 -0.02 0.96 16 34 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.10 0.76 7.98 -2.39 -0.02 0.75 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -76.18 327.47 2.13 -74.05 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -0.26 Total: 10.92 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 3.87 Total: -6.54 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -2.04 Total: -73.24 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -0.29 Total: -42.00 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.90 Total: 46.65 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.05 Total: -9.84 kcal Total: -76.18 2.13 -74.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697981724.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.124 kcal (2) G-P(sol) polarization free energy of solvation -76.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds