Wall clock time and date at job start Wed Apr 15 2020 11:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86795 * 120.00219 * 2 1 4 4 H 1.48505 * 109.47264 * 240.00386 * 3 2 1 5 5 H 1.48497 * 109.47144 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47325 * 120.00798 * 3 2 1 7 7 C 1.38802 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99990 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00000 * 359.97438 * 7 2 1 10 10 C 1.80993 * 99.99981 * 179.97438 * 9 7 2 11 11 C 1.50708 * 109.47281 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99583 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00035 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99870 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47151 * 179.97438 * 14 13 11 16 16 H 1.08996 * 109.46660 * 54.99744 * 15 14 13 17 17 C 1.50705 * 109.46896 * 294.99981 * 15 14 13 18 18 O 1.20822 * 119.99469 * 239.99913 * 17 15 14 19 19 O 1.34220 * 119.99988 * 60.00056 * 17 15 14 20 20 C 1.52994 * 109.46785 * 174.99912 * 15 14 13 21 21 C 1.53782 * 113.61734 * 299.99807 * 20 15 14 22 22 C 1.53781 * 87.08260 * 220.02231 * 21 20 15 23 23 C 1.53786 * 87.17350 * 25.39213 * 22 21 20 24 24 H 0.96999 * 119.99448 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46828 * 60.00446 * 10 9 7 26 26 H 1.08997 * 109.47326 * 299.99839 * 10 9 7 27 27 H 0.96998 * 120.00352 * 359.97438 * 13 11 10 28 28 H 1.09004 * 109.47003 * 59.99813 * 14 13 11 29 29 H 1.08997 * 109.46796 * 299.99423 * 14 13 11 30 30 H 0.96697 * 117.00377 * 179.97438 * 19 17 15 31 31 H 1.09002 * 112.84929 * 71.19883 * 20 15 14 32 32 H 1.09001 * 113.61250 * 105.47049 * 21 20 15 33 33 H 1.08997 * 113.61225 * 334.56890 * 21 20 15 34 34 H 1.09002 * 113.61445 * 139.98212 * 22 21 20 35 35 H 1.09002 * 113.61408 * 270.79943 * 22 21 20 36 36 H 1.08993 * 113.61491 * 89.15923 * 23 22 21 37 37 H 1.09000 * 113.61138 * 220.06261 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6964 -1.2126 5 1 1.2854 2.7464 0.0006 6 1 3.1043 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0021 11 6 1.9871 -5.3028 -0.0030 12 8 0.7909 -5.5023 -0.0030 13 7 2.8438 -6.3432 -0.0037 14 6 2.3300 -7.7152 -0.0051 15 6 3.5021 -8.6987 -0.0063 16 1 4.1594 -8.4816 0.8356 17 6 4.2727 -8.5602 -1.2940 18 8 4.3840 -9.5072 -2.0361 19 8 4.8352 -7.3850 -1.6164 20 6 2.9689 -10.1274 0.1180 21 6 2.1637 -10.3747 1.4045 22 6 2.8547 -11.7465 1.4797 23 6 4.0034 -11.1274 0.6659 24 1 -0.4849 0.8401 0.0004 25 1 3.1249 -3.7318 0.8875 26 1 3.1236 -3.7311 -0.8925 27 1 3.8006 -6.1836 -0.0040 28 1 1.7216 -7.8744 -0.8954 29 1 1.7213 -7.8760 0.8846 30 1 5.3197 -7.3448 -2.4523 31 1 2.4651 -10.4712 -0.7854 32 1 1.0877 -10.4362 1.2412 33 1 2.4312 -9.7057 2.2224 34 1 3.1422 -12.0357 2.4906 35 1 2.3195 -12.5346 0.9501 36 1 4.7746 -10.6646 1.2814 37 1 4.4104 -11.7958 -0.0929 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697981730.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:11 Heat of formation + Delta-G solvation = -121.736052 kcal Electronic energy + Delta-G solvation = -20178.327137 eV Core-core repulsion = 16854.126119 eV Total energy + Delta-G solvation = -3324.201018 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.01195 -39.13184 -38.82948 -36.34060 -35.02094 -32.42220 -31.74366 -29.09191 -26.20348 -25.53434 -25.00894 -24.26429 -21.06006 -20.45334 -19.69722 -18.32623 -17.79135 -17.17291 -16.45668 -16.27499 -15.71803 -15.23220 -15.05970 -14.86294 -14.79091 -13.91247 -13.84976 -13.28244 -13.01942 -12.79920 -12.70612 -12.56665 -12.16697 -11.97267 -11.77665 -11.62462 -11.05364 -11.03699 -11.03258 -10.82497 -10.76920 -10.62630 -10.50894 -9.81689 -9.40147 -9.05812 -8.90349 -8.22960 -6.49098 -6.20886 -3.91374 1.91454 2.69214 3.01501 3.10858 3.23857 3.27691 3.30829 3.67406 4.11033 4.21329 4.25793 4.32807 4.49210 4.66310 4.73988 4.86766 5.11000 5.14155 5.19642 5.38607 5.40839 5.43200 5.54161 5.59180 5.62846 5.71229 5.78642 5.88011 5.91673 6.13989 6.16455 6.24265 6.58260 7.58458 7.60133 7.75511 8.35798 8.61904 9.24281 10.86508 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.032739 B = 0.003076 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.037410 B = 9101.270660 C = 9615.052027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.533 3.467 12 O -0.519 6.519 13 N -0.736 5.736 14 C 0.131 3.869 15 C -0.082 4.082 16 H 0.116 0.884 17 C 0.484 3.516 18 O -0.511 6.511 19 O -0.513 6.513 20 C -0.094 4.094 21 C -0.136 4.136 22 C -0.141 4.141 23 C -0.134 4.134 24 H 0.269 0.731 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.404 0.596 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.412 0.588 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.739 -20.713 1.461 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.319 3.681 12 O -0.393 6.393 13 N -0.393 5.393 14 C 0.007 3.993 15 C -0.102 4.102 16 H 0.134 0.866 17 C 0.326 3.674 18 O -0.399 6.399 19 O -0.325 6.325 20 C -0.113 4.113 21 C -0.173 4.173 22 C -0.179 4.179 23 C -0.171 4.171 24 H 0.079 0.921 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.240 0.760 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.272 0.728 31 H 0.122 0.878 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.377 -21.216 1.623 22.868 hybrid contribution 2.847 1.405 -0.657 3.242 sum 11.224 -19.811 0.965 22.790 Atomic orbital electron populations 1.70011 1.05950 1.27550 1.46809 1.24993 0.95028 0.99015 0.94553 0.86224 0.79229 0.81249 0.78788 1.19955 1.20829 1.19945 1.22831 0.94885 0.91679 1.59014 0.90966 1.85388 1.04985 0.96305 1.96728 1.23519 1.06513 0.95259 1.04988 1.20304 0.86448 0.86294 0.75066 1.90705 1.15386 1.85637 1.47606 1.46051 1.10470 1.04865 1.77924 1.21171 0.94029 0.80337 1.03810 1.21469 0.97046 0.97938 0.93726 0.86647 1.23375 0.76306 0.79760 0.87945 1.90713 1.57518 1.39988 1.51656 1.84488 1.65614 1.36906 1.45522 1.22490 0.98461 0.90807 0.99542 1.22999 1.00008 0.97394 0.96925 1.22791 0.97600 0.96909 1.00580 1.22986 0.96485 0.98247 0.99409 0.92138 0.89205 0.89160 0.76039 0.91106 0.89622 0.72838 0.87768 0.90654 0.89510 0.91231 0.90044 0.90143 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.15 13.22 55.49 0.73 -25.41 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.33 29.55 -169.99 -5.02 16.30 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 11 C 0.53 9.81 7.85 -10.98 -0.09 9.72 16 12 O -0.52 -11.64 15.86 5.56 0.09 -11.56 16 13 N -0.74 -9.58 5.06 -60.29 -0.31 -9.89 16 14 C 0.13 1.45 4.94 -4.04 -0.02 1.43 16 15 C -0.08 -0.69 2.12 -91.77 -0.19 -0.88 16 16 H 0.12 0.77 7.95 -51.93 -0.41 0.36 16 17 C 0.48 4.70 7.62 36.01 0.27 4.97 16 18 O -0.51 -6.27 16.60 -18.75 -0.31 -6.59 16 19 O -0.51 -4.11 11.42 -39.23 -0.45 -4.55 16 20 C -0.09 -0.74 2.54 -89.71 -0.23 -0.97 16 21 C -0.14 -0.94 6.59 -25.92 -0.17 -1.11 16 22 C -0.14 -0.89 8.08 -25.92 -0.21 -1.10 16 23 C -0.13 -0.94 7.62 -25.82 -0.20 -1.14 16 24 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 26 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 27 H 0.40 4.33 6.94 -40.82 -0.28 4.04 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 0.95 7.28 -51.93 -0.38 0.57 16 30 H 0.41 1.84 9.10 45.56 0.41 2.26 16 31 H 0.10 0.93 7.86 -51.93 -0.41 0.53 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.56 8.10 -51.93 -0.42 0.14 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.51 7.97 -51.93 -0.41 0.09 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 330.41 15.07 4.98 4.98 Total: -1.00 -35.81 330.41 -7.31 -43.12 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -4.41 Total: 2.27 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -0.41 Total: -4.83 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.43 Total: -35.30 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.67 Total: -22.69 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.81 -7.31 -43.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697981730.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.613 kcal (2) G-P(sol) polarization free energy of solvation -35.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds