Wall clock time and date at job start Wed Apr 15 2020 11:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86795 * 120.00219 * 2 1 4 4 H 1.48505 * 109.47264 * 240.00386 * 3 2 1 5 5 H 1.48497 * 109.47144 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47325 * 120.00798 * 3 2 1 7 7 C 1.38802 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99990 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00000 * 359.97438 * 7 2 1 10 10 C 1.80993 * 99.99981 * 179.97438 * 9 7 2 11 11 C 1.50708 * 109.47281 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99583 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00035 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99870 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47151 * 179.97438 * 14 13 11 16 16 H 1.08996 * 109.46660 * 54.99744 * 15 14 13 17 17 C 1.50705 * 109.46896 * 294.99981 * 15 14 13 18 18 O 1.20822 * 119.99469 * 239.99913 * 17 15 14 19 19 O 1.34220 * 119.99988 * 60.00056 * 17 15 14 20 20 C 1.52994 * 109.46785 * 174.99912 * 15 14 13 21 21 C 1.53782 * 113.61734 * 299.99807 * 20 15 14 22 22 C 1.53781 * 87.08260 * 220.02231 * 21 20 15 23 23 C 1.53786 * 87.17350 * 25.39213 * 22 21 20 24 24 H 0.96999 * 119.99448 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46828 * 60.00446 * 10 9 7 26 26 H 1.08997 * 109.47326 * 299.99839 * 10 9 7 27 27 H 0.96998 * 120.00352 * 359.97438 * 13 11 10 28 28 H 1.09004 * 109.47003 * 59.99813 * 14 13 11 29 29 H 1.08997 * 109.46796 * 299.99423 * 14 13 11 30 30 H 0.96697 * 117.00377 * 179.97438 * 19 17 15 31 31 H 1.09002 * 112.84929 * 71.19883 * 20 15 14 32 32 H 1.09001 * 113.61250 * 105.47049 * 21 20 15 33 33 H 1.08997 * 113.61225 * 334.56890 * 21 20 15 34 34 H 1.09002 * 113.61445 * 139.98212 * 22 21 20 35 35 H 1.09002 * 113.61408 * 270.79943 * 22 21 20 36 36 H 1.08993 * 113.61491 * 89.15923 * 23 22 21 37 37 H 1.09000 * 113.61138 * 220.06261 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6964 -1.2126 5 1 1.2854 2.7464 0.0006 6 1 3.1043 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0021 11 6 1.9871 -5.3028 -0.0030 12 8 0.7909 -5.5023 -0.0030 13 7 2.8438 -6.3432 -0.0037 14 6 2.3300 -7.7152 -0.0051 15 6 3.5021 -8.6987 -0.0063 16 1 4.1594 -8.4816 0.8356 17 6 4.2727 -8.5602 -1.2940 18 8 4.3840 -9.5072 -2.0361 19 8 4.8352 -7.3850 -1.6164 20 6 2.9689 -10.1274 0.1180 21 6 2.1637 -10.3747 1.4045 22 6 2.8547 -11.7465 1.4797 23 6 4.0034 -11.1274 0.6659 24 1 -0.4849 0.8401 0.0004 25 1 3.1249 -3.7318 0.8875 26 1 3.1236 -3.7311 -0.8925 27 1 3.8006 -6.1836 -0.0040 28 1 1.7216 -7.8744 -0.8954 29 1 1.7213 -7.8760 0.8846 30 1 5.3197 -7.3448 -2.4523 31 1 2.4651 -10.4712 -0.7854 32 1 1.0877 -10.4362 1.2412 33 1 2.4312 -9.7057 2.2224 34 1 3.1422 -12.0357 2.4906 35 1 2.3195 -12.5346 0.9501 36 1 4.7746 -10.6646 1.2814 37 1 4.4104 -11.7958 -0.0929 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697981730.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:11 Heat of formation + Delta-G solvation = -147.364394 kcal Electronic energy + Delta-G solvation = -20179.438466 eV Core-core repulsion = 16854.126119 eV Total energy + Delta-G solvation = -3325.312346 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.79090 -40.42790 -39.54865 -37.10664 -36.14664 -34.56464 -32.83323 -30.50308 -27.67886 -26.81446 -25.79695 -25.07678 -21.79536 -21.74640 -20.38054 -19.81997 -18.99825 -17.93669 -17.75258 -17.49831 -16.85945 -16.59996 -16.37531 -16.01203 -15.89646 -15.33891 -14.84750 -14.71053 -14.40155 -13.90978 -13.62456 -13.36229 -13.22475 -13.14749 -12.84975 -12.80980 -12.60729 -12.57505 -12.41107 -11.77587 -11.68280 -11.50173 -11.23306 -11.12953 -11.11014 -10.89422 -10.25265 -10.13023 -8.64293 -8.32694 -6.10488 1.14246 1.28978 1.45367 1.48523 1.58098 1.63751 2.03705 2.25496 2.30805 3.01388 3.33008 3.39775 3.58295 3.74433 3.89914 3.97468 4.06621 4.13262 4.24957 4.33647 4.44176 4.55423 4.62697 4.74483 4.87391 4.91076 4.97006 5.13873 5.16054 5.32106 5.38830 5.43786 5.58584 5.62228 6.21670 6.51285 6.96508 7.08595 7.26297 8.76254 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.032739 B = 0.003076 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.037410 B = 9101.270660 C = 9615.052027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.152 6.152 10 C -0.129 4.129 11 C 0.535 3.465 12 O -0.566 6.566 13 N -0.709 5.709 14 C 0.132 3.868 15 C -0.071 4.071 16 H 0.142 0.858 17 C 0.486 3.514 18 O -0.540 6.540 19 O -0.512 6.512 20 C -0.098 4.098 21 C -0.135 4.135 22 C -0.137 4.137 23 C -0.131 4.131 24 H 0.271 0.729 25 H 0.112 0.888 26 H 0.109 0.891 27 H 0.419 0.581 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.428 0.572 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.263 -20.805 2.135 24.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.075 5.925 10 C -0.280 4.280 11 C 0.321 3.679 12 O -0.444 6.444 13 N -0.365 5.365 14 C 0.008 3.992 15 C -0.091 4.091 16 H 0.160 0.840 17 C 0.329 3.671 18 O -0.430 6.430 19 O -0.326 6.326 20 C -0.117 4.117 21 C -0.172 4.172 22 C -0.175 4.175 23 C -0.168 4.168 24 H 0.080 0.920 25 H 0.130 0.870 26 H 0.127 0.873 27 H 0.258 0.742 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.290 0.710 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.965 -21.334 2.289 24.096 hybrid contribution 2.119 1.315 -0.899 2.651 sum 13.084 -20.020 1.390 23.957 Atomic orbital electron populations 1.70181 1.07980 1.28638 1.48027 1.26129 0.95957 1.03323 0.93779 0.85007 0.77792 0.75712 0.79507 1.18698 1.20517 1.18586 1.23184 0.95385 0.92017 1.58841 0.89832 1.85572 1.10623 0.99222 1.97055 1.23366 1.03496 0.94256 1.06893 1.20039 0.86148 0.86671 0.75066 1.90698 1.17388 1.86116 1.50224 1.45778 1.10616 1.04590 1.75506 1.21259 0.95166 0.79412 1.03381 1.21458 0.96141 0.97283 0.94180 0.83992 1.23570 0.75942 0.79666 0.87889 1.90712 1.58718 1.41042 1.52539 1.84438 1.65495 1.35944 1.46687 1.22481 0.99151 0.90638 0.99453 1.23022 0.99712 0.97977 0.96502 1.22782 0.97061 0.96579 1.01056 1.22997 0.96714 0.97804 0.99313 0.92027 0.87005 0.87283 0.74242 0.92617 0.89153 0.70975 0.89361 0.91083 0.88607 0.90145 0.90103 0.88835 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.86 13.22 21.65 0.29 -55.57 16 2 C 0.01 0.73 5.49 84.86 0.47 1.19 16 3 Si 1.00 43.21 29.55 68.60 2.03 45.23 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.55 -30.92 9.50 67.95 0.65 -30.28 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 9 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 10 C -0.13 -4.99 6.16 71.24 0.44 -4.55 16 11 C 0.53 19.14 7.85 87.66 0.69 19.83 16 12 O -0.57 -25.64 15.86 -3.03 -0.05 -25.69 16 13 N -0.71 -16.91 5.06 -463.04 -2.34 -19.25 16 14 C 0.13 2.71 4.94 86.38 0.43 3.14 16 15 C -0.07 -1.04 2.12 -11.54 -0.02 -1.06 16 16 H 0.14 1.36 7.95 -2.39 -0.02 1.34 16 17 C 0.49 8.52 7.62 71.24 0.54 9.06 16 18 O -0.54 -12.70 16.60 21.97 0.36 -12.34 16 19 O -0.51 -6.88 11.42 -51.32 -0.59 -7.46 16 20 C -0.10 -1.41 2.54 -10.21 -0.03 -1.44 16 21 C -0.13 -1.63 6.59 31.12 0.21 -1.43 16 22 C -0.14 -1.49 8.08 31.12 0.25 -1.24 16 23 C -0.13 -1.61 7.62 31.18 0.24 -1.37 16 24 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 25 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 26 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 27 H 0.42 7.59 6.94 -92.71 -0.64 6.95 16 28 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.09 1.86 7.28 -2.39 -0.02 1.84 16 30 H 0.43 2.82 9.10 -74.06 -0.67 2.15 16 31 H 0.09 1.57 7.86 -2.39 -0.02 1.55 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.10 1.00 8.10 -2.39 -0.02 0.98 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.09 0.91 7.97 -2.39 -0.02 0.89 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -79.12 330.41 2.17 -76.95 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -0.22 Total: 15.80 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 3.85 Total: -8.14 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -2.06 Total: -74.83 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -0.27 Total: -45.49 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -79.12 2.17 -76.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697981730.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.419 kcal (2) G-P(sol) polarization free energy of solvation -79.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds