Wall clock time and date at job start Wed Apr 15 2020 11:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 120.00102 * 2 1 4 4 H 1.48501 * 109.47405 * 270.00308 * 3 2 1 5 5 H 1.48505 * 109.47032 * 30.00068 * 3 2 1 6 6 H 1.48497 * 109.47409 * 150.00077 * 3 2 1 7 7 C 1.38795 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00171 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47178 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.46929 * 120.63415 * 359.71452 * 13 11 10 15 15 C 1.52760 * 109.05784 * 233.74825 * 14 13 11 16 16 C 1.53055 * 109.38253 * 305.41390 * 15 14 13 17 17 C 1.52978 * 109.51466 * 60.99013 * 16 15 14 18 18 C 1.46953 * 120.64140 * 180.02562 * 13 11 10 19 19 O 1.43674 * 109.45994 * 59.08213 * 17 16 15 20 20 C 1.44809 * 104.78344 * 95.64635 * 19 17 16 21 21 C 1.54922 * 101.72948 * 36.02945 * 20 19 17 22 22 O 1.43268 * 109.70382 * 178.51339 * 17 16 15 23 23 H 0.97005 * 119.99806 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 25 25 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 26 26 H 1.08998 * 109.57770 * 353.60195 * 14 13 11 27 27 H 1.08997 * 109.57389 * 113.99553 * 14 13 11 28 28 H 1.09004 * 109.56377 * 185.37658 * 15 14 13 29 29 H 1.09000 * 109.35753 * 65.32677 * 15 14 13 30 30 H 1.08997 * 109.46619 * 300.98354 * 16 15 14 31 31 H 1.08993 * 109.46051 * 180.99809 * 16 15 14 32 32 H 1.08996 * 109.58827 * 246.38996 * 18 13 11 33 33 H 1.09003 * 109.58767 * 6.83428 * 18 13 11 34 34 H 1.09000 * 110.97169 * 277.92623 * 20 19 17 35 35 H 1.08992 * 111.00893 * 154.15494 * 20 19 17 36 36 H 1.08994 * 110.69373 * 206.09472 * 21 20 19 37 37 H 1.09001 * 110.68858 * 82.89888 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9874 -5.3027 -0.0030 12 8 0.7911 -5.5023 -0.0021 13 7 2.8441 -6.3431 -0.0037 14 6 4.2959 -6.1174 -0.0100 15 6 4.9154 -6.8875 -1.1748 16 6 4.5124 -8.3610 -1.0812 17 6 2.9899 -8.4810 -1.1689 18 6 2.3442 -7.7250 -0.0051 19 8 2.5364 -7.9206 -2.4117 20 6 2.4230 -9.0524 -3.3079 21 6 1.9269 -10.1642 -2.3498 22 8 2.6103 -9.8615 -1.1165 23 1 -0.4850 0.8401 0.0004 24 1 3.1238 -3.7309 -0.8925 25 1 3.1252 -3.7317 0.8875 26 1 4.4996 -5.0532 -0.1279 27 1 4.7246 -6.4717 0.9275 28 1 6.0014 -6.8037 -1.1313 29 1 4.5553 -6.4708 -2.1155 30 1 4.8548 -8.7716 -0.1313 31 1 4.9682 -8.9150 -1.9017 32 1 2.6063 -8.2094 0.9354 33 1 1.2611 -7.7216 -0.1276 34 1 3.3920 -9.3099 -3.7357 35 1 1.6916 -8.8581 -4.0922 36 1 2.2160 -11.1481 -2.7190 37 1 0.8467 -10.1038 -2.2165 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701245429.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:14 Heat of formation + Delta-G solvation = -118.706607 kcal Electronic energy + Delta-G solvation = -21210.973916 eV Core-core repulsion = 17886.904264 eV Total energy + Delta-G solvation = -3324.069652 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.11350 -39.23283 -36.56404 -35.18242 -32.56379 -32.40028 -31.44193 -29.43281 -27.91010 -25.59952 -25.15017 -23.66823 -22.76851 -20.95123 -19.05971 -17.75898 -17.27109 -17.02542 -16.55604 -15.80474 -15.54455 -15.25061 -14.78243 -14.64803 -14.39476 -13.93666 -13.81370 -13.28806 -13.16046 -13.09036 -12.83835 -12.62571 -12.44802 -11.93955 -11.85530 -11.41244 -11.19469 -11.14424 -11.04379 -10.99188 -10.74025 -10.41301 -9.93845 -9.76173 -9.31786 -9.04262 -8.45829 -8.18880 -6.46824 -6.19046 -3.89310 2.78839 3.10923 3.20062 3.24028 3.30042 3.33941 3.63033 3.73266 4.22558 4.30694 4.44413 4.53341 4.65553 4.78330 4.85320 4.94892 5.01939 5.16038 5.16679 5.29694 5.32425 5.39543 5.50823 5.56246 5.59484 5.62722 5.70310 5.74841 5.91874 5.96558 6.09119 6.15395 6.55437 6.91768 7.58326 7.62102 8.37604 8.60786 9.26117 10.88398 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.032816 B = 0.003779 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.027435 B = 7407.860290 C = 7696.687190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.149 4.149 11 C 0.539 3.461 12 O -0.515 6.515 13 N -0.612 5.612 14 C 0.106 3.894 15 C -0.131 4.131 16 C -0.134 4.134 17 C 0.244 3.756 18 C 0.115 3.885 19 O -0.354 6.354 20 C 0.013 3.987 21 C 0.021 3.979 22 O -0.377 6.377 23 H 0.268 0.732 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.850 -19.823 -4.252 22.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.299 4.299 11 C 0.328 3.672 12 O -0.388 6.388 13 N -0.350 5.350 14 C -0.018 4.018 15 C -0.169 4.169 16 C -0.172 4.172 17 C 0.166 3.834 18 C -0.009 4.009 19 O -0.274 6.274 20 C -0.064 4.064 21 C -0.056 4.056 22 O -0.297 6.297 23 H 0.078 0.922 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.112 0.888 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.121 0.879 34 H 0.091 0.909 35 H 0.127 0.873 36 H 0.117 0.883 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.888 -19.911 -4.107 22.189 hybrid contribution 2.081 1.065 -0.252 2.351 sum 10.969 -18.846 -4.359 22.237 Atomic orbital electron populations 1.70022 1.05956 1.27407 1.46913 1.24983 0.95012 0.98989 0.94566 0.86175 0.79418 0.81608 0.78331 1.20288 1.20771 1.19688 1.22864 0.94896 0.91661 1.58876 0.90947 1.85414 1.05025 0.96282 1.96686 1.23542 1.06452 0.95205 1.04709 1.20302 0.86137 0.86067 0.74725 1.90683 1.15206 1.85126 1.47822 1.47932 1.06461 1.04955 1.75631 1.21683 0.79950 1.01890 0.98239 1.21800 1.00754 0.94158 1.00212 1.22076 0.93835 0.97869 1.03462 1.23689 0.93620 0.79436 0.86665 1.21641 1.01497 0.81774 0.95968 1.89411 1.87667 1.29332 1.20999 1.24389 1.01992 0.85453 0.94538 1.24218 0.98257 0.99620 0.83456 1.88849 1.76219 1.25883 1.38793 0.92211 0.89201 0.89232 0.88803 0.91338 0.90100 0.90376 0.90084 0.91112 0.89888 0.87903 0.90867 0.87287 0.88265 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.53 -15.38 9.50 30.94 0.29 -15.08 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.15 -3.12 4.50 36.01 0.16 -2.95 16 11 C 0.54 10.86 7.72 -10.98 -0.08 10.78 16 12 O -0.51 -12.35 15.28 5.56 0.08 -12.26 16 13 N -0.61 -9.45 2.93 -173.09 -0.51 -9.96 16 14 C 0.11 1.22 6.31 -3.93 -0.02 1.20 16 15 C -0.13 -1.29 5.93 -26.83 -0.16 -1.45 16 16 C -0.13 -1.32 5.27 -26.71 -0.14 -1.46 16 17 C 0.24 2.98 1.05 -26.71 -0.03 2.96 16 18 C 0.12 1.63 5.77 -3.76 -0.02 1.61 16 19 O -0.35 -4.82 10.20 -59.04 -0.60 -5.42 16 20 C 0.01 0.12 7.92 38.17 0.30 0.42 16 21 C 0.02 0.18 8.08 38.17 0.31 0.49 16 22 O -0.38 -4.34 10.87 -59.04 -0.64 -4.98 16 23 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 24 H 0.09 1.76 7.69 -51.92 -0.40 1.36 16 25 H 0.09 1.72 7.95 -51.92 -0.41 1.31 16 26 H 0.09 1.09 5.93 -51.93 -0.31 0.79 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.91 7.63 -51.93 -0.40 0.52 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.10 1.70 7.01 -51.93 -0.36 1.34 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 317.07 15.07 4.78 4.78 Total: -1.00 -35.60 317.07 -8.11 -43.71 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -5.23 Total: -1.32 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 0.51 Total: -1.48 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.23 Total: -35.62 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -1.16 Total: -22.66 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.60 -8.11 -43.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701245429.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.995 kcal (2) G-P(sol) polarization free energy of solvation -35.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds