Wall clock time and date at job start Wed Apr 15 2020 11:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 120.00102 * 2 1 4 4 H 1.48501 * 109.47405 * 270.00308 * 3 2 1 5 5 H 1.48505 * 109.47032 * 30.00068 * 3 2 1 6 6 H 1.48497 * 109.47409 * 150.00077 * 3 2 1 7 7 C 1.38795 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00171 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47178 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.46929 * 120.63415 * 359.71452 * 13 11 10 15 15 C 1.52760 * 109.05784 * 233.74825 * 14 13 11 16 16 C 1.53055 * 109.38253 * 305.41390 * 15 14 13 17 17 C 1.52978 * 109.51466 * 60.99013 * 16 15 14 18 18 C 1.46953 * 120.64140 * 180.02562 * 13 11 10 19 19 O 1.43674 * 109.45994 * 59.08213 * 17 16 15 20 20 C 1.44809 * 104.78344 * 95.64635 * 19 17 16 21 21 C 1.54922 * 101.72948 * 36.02945 * 20 19 17 22 22 O 1.43268 * 109.70382 * 178.51339 * 17 16 15 23 23 H 0.97005 * 119.99806 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 25 25 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 26 26 H 1.08998 * 109.57770 * 353.60195 * 14 13 11 27 27 H 1.08997 * 109.57389 * 113.99553 * 14 13 11 28 28 H 1.09004 * 109.56377 * 185.37658 * 15 14 13 29 29 H 1.09000 * 109.35753 * 65.32677 * 15 14 13 30 30 H 1.08997 * 109.46619 * 300.98354 * 16 15 14 31 31 H 1.08993 * 109.46051 * 180.99809 * 16 15 14 32 32 H 1.08996 * 109.58827 * 246.38996 * 18 13 11 33 33 H 1.09003 * 109.58767 * 6.83428 * 18 13 11 34 34 H 1.09000 * 110.97169 * 277.92623 * 20 19 17 35 35 H 1.08992 * 111.00893 * 154.15494 * 20 19 17 36 36 H 1.08994 * 110.69373 * 206.09472 * 21 20 19 37 37 H 1.09001 * 110.68858 * 82.89888 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9874 -5.3027 -0.0030 12 8 0.7911 -5.5023 -0.0021 13 7 2.8441 -6.3431 -0.0037 14 6 4.2959 -6.1174 -0.0100 15 6 4.9154 -6.8875 -1.1748 16 6 4.5124 -8.3610 -1.0812 17 6 2.9899 -8.4810 -1.1689 18 6 2.3442 -7.7250 -0.0051 19 8 2.5364 -7.9206 -2.4117 20 6 2.4230 -9.0524 -3.3079 21 6 1.9269 -10.1642 -2.3498 22 8 2.6103 -9.8615 -1.1165 23 1 -0.4850 0.8401 0.0004 24 1 3.1238 -3.7309 -0.8925 25 1 3.1252 -3.7317 0.8875 26 1 4.4996 -5.0532 -0.1279 27 1 4.7246 -6.4717 0.9275 28 1 6.0014 -6.8037 -1.1313 29 1 4.5553 -6.4708 -2.1155 30 1 4.8548 -8.7716 -0.1313 31 1 4.9682 -8.9150 -1.9017 32 1 2.6063 -8.2094 0.9354 33 1 1.2611 -7.7216 -0.1276 34 1 3.3920 -9.3099 -3.7357 35 1 1.6916 -8.8581 -4.0922 36 1 2.2160 -11.1481 -2.7190 37 1 0.8467 -10.1038 -2.2165 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701245429.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:13 Heat of formation + Delta-G solvation = -144.214043 kcal Electronic energy + Delta-G solvation = -21212.080001 eV Core-core repulsion = 17886.904264 eV Total energy + Delta-G solvation = -3325.175737 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.04661 -40.57744 -37.77364 -36.06662 -34.58439 -33.67486 -32.45525 -30.74558 -28.91365 -27.68775 -26.38288 -24.45033 -23.65040 -22.05465 -20.39935 -19.52197 -18.38798 -18.10154 -17.72468 -16.89543 -16.82224 -16.72968 -16.44829 -15.81519 -15.69822 -15.24316 -14.77347 -14.58768 -14.42438 -14.28027 -14.04015 -13.68842 -13.51632 -13.37848 -13.16877 -12.88423 -12.76164 -12.59927 -12.28396 -12.03931 -11.98913 -11.71467 -11.17519 -11.13836 -10.99393 -10.77265 -10.26551 -9.66753 -8.68008 -8.34032 -6.13068 1.22878 1.43496 1.44044 1.53498 1.57077 1.94994 2.27510 2.48003 2.85052 3.00178 3.24010 3.52655 3.63504 3.68279 3.82331 3.96289 4.01693 4.05898 4.19983 4.24590 4.37269 4.41463 4.50137 4.52845 4.60810 4.66261 4.72531 4.81245 4.94299 4.97025 5.02719 5.29295 5.41973 5.43259 6.06305 6.20042 6.23993 7.06832 7.09907 8.75423 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.032816 B = 0.003779 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.027435 B = 7407.860290 C = 7696.687190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.256 1.256 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.120 4.120 11 C 0.535 3.465 12 O -0.567 6.567 13 N -0.599 5.599 14 C 0.094 3.906 15 C -0.124 4.124 16 C -0.128 4.128 17 C 0.244 3.756 18 C 0.109 3.891 19 O -0.391 6.391 20 C 0.008 3.992 21 C 0.017 3.983 22 O -0.388 6.388 23 H 0.271 0.729 24 H 0.106 0.894 25 H 0.111 0.889 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.116 0.884 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.133 0.867 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.326 -20.587 -4.503 25.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.180 1.180 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.271 4.271 11 C 0.323 3.677 12 O -0.446 6.446 13 N -0.334 5.334 14 C -0.027 4.027 15 C -0.162 4.162 16 C -0.166 4.166 17 C 0.166 3.834 18 C -0.015 4.015 19 O -0.312 6.312 20 C -0.067 4.067 21 C -0.058 4.058 22 O -0.308 6.308 23 H 0.080 0.920 24 H 0.124 0.876 25 H 0.130 0.870 26 H 0.112 0.888 27 H 0.117 0.883 28 H 0.134 0.866 29 H 0.076 0.924 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.122 0.878 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.150 0.850 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.420 -20.725 -4.366 24.553 hybrid contribution 1.012 1.128 -0.197 1.528 sum 13.433 -19.597 -4.563 24.193 Atomic orbital electron populations 1.70194 1.08064 1.28620 1.48005 1.26149 0.95959 1.03363 0.93654 0.84929 0.78240 0.75838 0.78810 1.19299 1.20318 1.17986 1.23198 0.95377 0.91786 1.58949 0.89764 1.85631 1.10669 0.99369 1.97031 1.23340 1.03394 0.93902 1.06421 1.20180 0.85917 0.86716 0.74879 1.90662 1.17418 1.85764 1.50742 1.47915 1.07773 1.04417 1.73329 1.22095 0.77308 1.02599 1.00746 1.21777 1.02532 0.93732 0.98141 1.22073 0.91527 0.97998 1.05015 1.23691 0.95016 0.79372 0.85308 1.21799 0.99879 0.81374 0.98404 1.89375 1.88100 1.31566 1.22154 1.24647 1.03547 0.84302 0.94251 1.24425 0.97878 1.01083 0.82462 1.88826 1.76534 1.25204 1.40261 0.91995 0.87562 0.87048 0.88843 0.88293 0.86618 0.92423 0.88444 0.89529 0.87838 0.91355 0.88668 0.86459 0.84961 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.81 13.22 21.65 0.29 -56.52 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.83 29.55 68.60 2.03 45.85 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 7 C -0.55 -31.58 9.50 67.95 0.65 -30.94 16 8 H 0.08 4.50 7.80 -2.91 -0.02 4.47 16 9 S -0.15 -8.86 20.57 -56.49 -1.16 -10.02 16 10 C -0.12 -5.02 4.50 71.24 0.32 -4.70 16 11 C 0.54 21.96 7.72 87.66 0.68 22.63 16 12 O -0.57 -28.72 15.28 -3.02 -0.05 -28.77 16 13 N -0.60 -18.05 2.93 -819.92 -2.40 -20.45 16 14 C 0.09 1.91 6.31 86.22 0.54 2.45 16 15 C -0.12 -2.03 5.93 30.53 0.18 -1.85 16 16 C -0.13 -2.08 5.27 30.61 0.16 -1.92 16 17 C 0.24 5.62 1.05 30.61 0.03 5.65 16 18 C 0.11 3.06 5.77 86.31 0.50 3.55 16 19 O -0.39 -10.43 10.20 -126.22 -1.29 -11.71 16 20 C 0.01 0.14 7.92 72.64 0.57 0.71 16 21 C 0.02 0.27 8.08 72.64 0.59 0.86 16 22 O -0.39 -8.26 10.87 -126.22 -1.37 -9.63 16 23 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 24 H 0.11 4.09 7.69 -2.39 -0.02 4.07 16 25 H 0.11 4.16 7.95 -2.39 -0.02 4.14 16 26 H 0.09 1.92 5.93 -2.39 -0.01 1.90 16 27 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 1.22 7.63 -2.39 -0.02 1.20 16 30 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.07 2.39 7.01 -2.39 -0.02 2.37 16 34 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -81.27 317.07 1.80 -79.48 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 1.07 Total: 14.10 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 4.69 Total: -2.32 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -2.11 Total: -76.98 kcal Atomic # 8 Polarization: -47.41 SS G_CDS: -2.71 Total: -50.12 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.16 Total: -10.02 kcal Total: -81.27 1.80 -79.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701245429.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.738 kcal (2) G-P(sol) polarization free energy of solvation -81.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds