Wall clock time and date at job start Wed Apr 15 2020 11:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99875 * 2 1 4 4 H 1.48497 * 109.47404 * 270.00174 * 3 2 1 5 5 H 1.48502 * 109.46959 * 30.00031 * 3 2 1 6 6 H 1.48504 * 109.47095 * 149.99766 * 3 2 1 7 7 C 1.38796 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99772 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00298 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00218 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47139 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00268 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99650 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99879 * 180.02562 * 13 11 10 15 15 H 1.09009 * 110.44881 * 32.41824 * 14 13 11 16 16 C 1.54968 * 110.50211 * 269.69768 * 14 13 11 17 17 C 1.55007 * 102.81941 * 203.70870 * 16 14 13 18 18 C 1.54362 * 104.16259 * 37.68962 * 17 16 14 19 19 C 1.53529 * 106.51902 * 336.50630 * 18 17 16 20 20 O 1.43352 * 110.18153 * 240.60908 * 19 18 17 21 21 C 1.44883 * 104.69608 * 214.56567 * 20 19 18 22 22 C 1.54944 * 101.77992 * 35.71811 * 21 20 19 23 23 O 1.42983 * 110.37544 * 119.83669 * 19 18 17 24 24 H 0.97006 * 119.99859 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47051 * 59.99953 * 10 9 7 26 26 H 1.09003 * 109.47171 * 300.00391 * 10 9 7 27 27 H 0.97000 * 120.00089 * 0.02562 * 13 11 10 28 28 H 1.09004 * 110.74468 * 322.00111 * 16 14 13 29 29 H 1.09001 * 110.74993 * 85.16849 * 16 14 13 30 30 H 1.09006 * 110.47306 * 279.04225 * 17 16 14 31 31 H 1.08995 * 110.53694 * 156.37791 * 17 16 14 32 32 H 1.09002 * 110.05797 * 217.22639 * 18 17 16 33 33 H 1.09000 * 110.05236 * 95.78803 * 18 17 16 34 34 H 1.09005 * 110.97170 * 277.59892 * 21 20 19 35 35 H 1.09000 * 111.00585 * 153.85382 * 21 20 19 36 36 H 1.08995 * 110.69820 * 206.26648 * 22 21 20 37 37 H 1.08998 * 110.84035 * 83.13454 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0019 10 6 2.5159 -3.8914 -0.0029 11 6 1.9874 -5.3027 -0.0048 12 8 0.7912 -5.5023 -0.0059 13 7 2.8443 -6.3430 -0.0064 14 6 2.3306 -7.7150 -0.0088 15 1 1.3897 -7.7684 -0.5567 16 6 2.1471 -8.2284 1.4418 17 6 2.2187 -9.7677 1.2735 18 6 3.2985 -9.9794 0.1909 19 6 3.3654 -8.6771 -0.6196 20 8 3.0442 -8.9324 -1.9931 21 6 3.8785 -8.0149 -2.7423 22 6 5.1717 -7.9946 -1.8890 23 8 4.6743 -8.1073 -0.5390 24 1 -0.4850 0.8401 -0.0004 25 1 3.1245 -3.7321 0.8871 26 1 3.1246 -3.7305 -0.8928 27 1 3.8010 -6.1834 -0.0059 28 1 2.9543 -7.8728 2.0822 29 1 1.1786 -7.9251 1.8392 30 1 1.2589 -10.1595 0.9366 31 1 2.5180 -10.2411 2.2085 32 1 3.0196 -10.8096 -0.4581 33 1 4.2627 -10.1786 0.6586 34 1 3.4258 -7.0244 -2.7879 35 1 4.0780 -8.3968 -3.7435 36 1 5.7080 -7.0555 -2.0247 37 1 5.8122 -8.8414 -2.1353 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715985613.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:15 Heat of formation + Delta-G solvation = -129.146807 kcal Electronic energy + Delta-G solvation = -21050.877724 eV Core-core repulsion = 17726.355351 eV Total energy + Delta-G solvation = -3324.522373 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.26270 -38.93381 -36.67429 -35.34683 -33.53475 -32.42312 -30.13624 -29.71719 -27.43239 -26.26295 -25.43117 -23.58695 -21.31607 -20.69955 -20.17453 -18.04229 -17.46990 -17.12913 -16.56765 -15.90918 -15.61965 -14.90732 -14.81067 -14.78607 -14.33264 -14.13337 -13.71385 -13.39585 -13.13958 -12.96284 -12.83466 -12.57871 -12.25026 -11.89550 -11.66031 -11.50349 -11.35319 -11.06094 -11.01960 -10.86612 -10.76415 -10.49549 -10.00944 -9.78980 -9.37319 -9.06410 -8.75871 -8.22693 -6.49276 -6.21204 -3.91662 2.92758 3.09781 3.17682 3.22508 3.29003 3.35184 3.58814 3.76902 4.19075 4.20968 4.28208 4.41201 4.65425 4.80846 4.84295 5.12548 5.13940 5.15132 5.17992 5.23637 5.33178 5.38890 5.47422 5.52467 5.62096 5.69023 5.78558 5.82543 5.89793 6.04628 6.14492 6.16105 6.61265 6.88534 7.59962 7.78865 8.35636 8.65005 9.24097 10.86216 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.028973 B = 0.003726 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.191910 B = 7513.151592 C = 7987.214721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.152 4.152 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.726 5.726 14 C 0.125 3.875 15 H 0.110 0.890 16 C -0.134 4.134 17 C -0.120 4.120 18 C -0.126 4.126 19 C 0.248 3.752 20 O -0.365 6.365 21 C 0.013 3.987 22 C 0.019 3.981 23 O -0.371 6.371 24 H 0.268 0.732 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.402 0.598 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.267 -19.707 -2.077 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.318 3.682 12 O -0.392 6.392 13 N -0.382 5.382 14 C 0.018 3.982 15 H 0.128 0.872 16 C -0.173 4.173 17 C -0.158 4.158 18 C -0.164 4.164 19 C 0.170 3.830 20 O -0.285 6.285 21 C -0.063 4.063 22 C -0.057 4.057 23 O -0.292 6.292 24 H 0.078 0.922 25 H 0.108 0.892 26 H 0.106 0.894 27 H 0.239 0.761 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.055 -20.021 -1.976 22.062 hybrid contribution 2.536 1.492 -0.202 2.949 sum 11.591 -18.529 -2.178 21.964 Atomic orbital electron populations 1.70024 1.05953 1.27436 1.46884 1.24987 0.95017 0.99006 0.94535 0.86171 0.79422 0.81583 0.78330 1.20286 1.20745 1.19695 1.22872 0.94913 0.91695 1.58931 0.90955 1.85396 1.04902 0.96252 1.96708 1.23521 1.06533 0.95355 1.04865 1.20346 0.86560 0.86278 0.75025 1.90695 1.15356 1.85536 1.47586 1.45936 1.10419 1.04470 1.77356 1.22312 0.97396 0.81416 0.97077 0.87190 1.22888 1.03377 0.94792 0.96199 1.22301 0.98770 0.96274 0.98485 1.22388 1.01111 0.95425 0.97450 1.24075 0.82463 0.92930 0.83523 1.89260 1.63485 1.59304 1.16471 1.24448 0.89179 0.95427 0.97236 1.24264 0.96839 1.03480 0.81132 1.88825 1.30207 1.83494 1.26676 0.92192 0.89207 0.89400 0.76127 0.90591 0.90120 0.90817 0.90656 0.89613 0.89435 0.90075 0.87278 0.87939 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.33 9.50 30.94 0.29 -15.03 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 11 C 0.53 10.20 7.85 -10.99 -0.09 10.11 16 12 O -0.52 -11.93 15.51 5.56 0.09 -11.84 16 13 N -0.73 -10.61 5.09 -52.33 -0.27 -10.88 16 14 C 0.12 1.68 2.89 -66.41 -0.19 1.48 16 15 H 0.11 1.73 7.48 -51.92 -0.39 1.34 16 16 C -0.13 -1.59 6.58 -24.63 -0.16 -1.75 16 17 C -0.12 -1.10 6.85 -24.96 -0.17 -1.27 16 18 C -0.13 -1.17 6.43 -25.74 -0.17 -1.34 16 19 C 0.25 2.80 1.31 -25.97 -0.03 2.77 16 20 O -0.37 -4.32 10.89 -59.03 -0.64 -4.96 16 21 C 0.01 0.12 7.94 38.18 0.30 0.43 16 22 C 0.02 0.15 8.08 38.18 0.31 0.46 16 23 O -0.37 -3.96 9.13 -59.03 -0.54 -4.50 16 24 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 26 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 27 H 0.40 5.11 7.20 -40.82 -0.29 4.82 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.75 7.96 -51.93 -0.41 0.33 16 33 H 0.09 0.75 7.96 -51.93 -0.41 0.33 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 322.50 15.07 4.86 4.86 Total: -1.00 -34.38 322.50 -8.06 -42.44 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.28 Total: 2.83 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 0.22 Total: -5.01 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.47 Total: -36.39 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -1.10 Total: -21.30 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.38 -8.06 -42.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715985613.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.707 kcal (2) G-P(sol) polarization free energy of solvation -34.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds