Wall clock time and date at job start Wed Apr 15 2020 11:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99875 * 2 1 4 4 H 1.48497 * 109.47404 * 270.00174 * 3 2 1 5 5 H 1.48502 * 109.46959 * 30.00031 * 3 2 1 6 6 H 1.48504 * 109.47095 * 149.99766 * 3 2 1 7 7 C 1.38796 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99772 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00298 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00218 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47139 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00268 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99650 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99879 * 180.02562 * 13 11 10 15 15 H 1.09009 * 110.44881 * 32.41824 * 14 13 11 16 16 C 1.54968 * 110.50211 * 269.69768 * 14 13 11 17 17 C 1.55007 * 102.81941 * 203.70870 * 16 14 13 18 18 C 1.54362 * 104.16259 * 37.68962 * 17 16 14 19 19 C 1.53529 * 106.51902 * 336.50630 * 18 17 16 20 20 O 1.43352 * 110.18153 * 240.60908 * 19 18 17 21 21 C 1.44883 * 104.69608 * 214.56567 * 20 19 18 22 22 C 1.54944 * 101.77992 * 35.71811 * 21 20 19 23 23 O 1.42983 * 110.37544 * 119.83669 * 19 18 17 24 24 H 0.97006 * 119.99859 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47051 * 59.99953 * 10 9 7 26 26 H 1.09003 * 109.47171 * 300.00391 * 10 9 7 27 27 H 0.97000 * 120.00089 * 0.02562 * 13 11 10 28 28 H 1.09004 * 110.74468 * 322.00111 * 16 14 13 29 29 H 1.09001 * 110.74993 * 85.16849 * 16 14 13 30 30 H 1.09006 * 110.47306 * 279.04225 * 17 16 14 31 31 H 1.08995 * 110.53694 * 156.37791 * 17 16 14 32 32 H 1.09002 * 110.05797 * 217.22639 * 18 17 16 33 33 H 1.09000 * 110.05236 * 95.78803 * 18 17 16 34 34 H 1.09005 * 110.97170 * 277.59892 * 21 20 19 35 35 H 1.09000 * 111.00585 * 153.85382 * 21 20 19 36 36 H 1.08995 * 110.69820 * 206.26648 * 22 21 20 37 37 H 1.08998 * 110.84035 * 83.13454 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0019 10 6 2.5159 -3.8914 -0.0029 11 6 1.9874 -5.3027 -0.0048 12 8 0.7912 -5.5023 -0.0059 13 7 2.8443 -6.3430 -0.0064 14 6 2.3306 -7.7150 -0.0088 15 1 1.3897 -7.7684 -0.5567 16 6 2.1471 -8.2284 1.4418 17 6 2.2187 -9.7677 1.2735 18 6 3.2985 -9.9794 0.1909 19 6 3.3654 -8.6771 -0.6196 20 8 3.0442 -8.9324 -1.9931 21 6 3.8785 -8.0149 -2.7423 22 6 5.1717 -7.9946 -1.8890 23 8 4.6743 -8.1073 -0.5390 24 1 -0.4850 0.8401 -0.0004 25 1 3.1245 -3.7321 0.8871 26 1 3.1246 -3.7305 -0.8928 27 1 3.8010 -6.1834 -0.0059 28 1 2.9543 -7.8728 2.0822 29 1 1.1786 -7.9251 1.8392 30 1 1.2589 -10.1595 0.9366 31 1 2.5180 -10.2411 2.2085 32 1 3.0196 -10.8096 -0.4581 33 1 4.2627 -10.1786 0.6586 34 1 3.4258 -7.0244 -2.7879 35 1 4.0780 -8.3968 -3.7435 36 1 5.7080 -7.0555 -2.0247 37 1 5.8122 -8.8414 -2.1353 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715985613.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:15 Heat of formation + Delta-G solvation = -153.988789 kcal Electronic energy + Delta-G solvation = -21051.954953 eV Core-core repulsion = 17726.355351 eV Total energy + Delta-G solvation = -3325.599602 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.15365 -40.37415 -37.64909 -36.16608 -34.85433 -34.58571 -31.23323 -30.86568 -28.48892 -27.68452 -27.13855 -24.28773 -22.39935 -21.61041 -21.48033 -19.90738 -18.51316 -18.21010 -17.77972 -16.91621 -16.87890 -16.61849 -16.43055 -16.03213 -15.54251 -15.23271 -14.86716 -14.60818 -14.41870 -14.15236 -13.91527 -13.72462 -13.51256 -13.17450 -12.92642 -12.87625 -12.63520 -12.59946 -12.29888 -12.18938 -11.74863 -11.65457 -11.32736 -11.14751 -10.98536 -10.86591 -10.29351 -10.00691 -8.68162 -8.35193 -6.13798 1.24640 1.42501 1.45539 1.55353 1.56557 2.10052 2.26754 2.49413 2.78796 2.99088 3.29283 3.33272 3.48895 3.65573 3.92425 3.99653 4.04632 4.12705 4.25341 4.33036 4.36503 4.37714 4.46859 4.53936 4.60195 4.73758 4.83272 4.85937 4.96237 5.08884 5.11396 5.25295 5.41046 5.41452 6.04931 6.19221 6.45741 7.06013 7.19228 8.74114 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.028973 B = 0.003726 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.191910 B = 7513.151592 C = 7987.214721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.148 6.148 10 C -0.128 4.128 11 C 0.534 3.466 12 O -0.564 6.564 13 N -0.701 5.701 14 C 0.115 3.885 15 H 0.081 0.919 16 C -0.133 4.133 17 C -0.113 4.113 18 C -0.120 4.120 19 C 0.252 3.748 20 O -0.383 6.383 21 C 0.006 3.994 22 C 0.018 3.982 23 O -0.381 6.381 24 H 0.271 0.729 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.415 0.585 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.134 0.866 36 H 0.120 0.880 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.279 -20.438 -2.119 25.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.821 3.179 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.079 5.921 10 C -0.279 4.279 11 C 0.321 3.679 12 O -0.442 6.442 13 N -0.356 5.356 14 C 0.009 3.991 15 H 0.099 0.901 16 C -0.172 4.172 17 C -0.150 4.150 18 C -0.158 4.158 19 C 0.173 3.827 20 O -0.303 6.303 21 C -0.070 4.070 22 C -0.057 4.057 23 O -0.302 6.302 24 H 0.080 0.920 25 H 0.127 0.873 26 H 0.128 0.872 27 H 0.254 0.746 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.081 0.919 35 H 0.152 0.848 36 H 0.138 0.862 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 12.120 -20.791 -2.023 24.150 hybrid contribution 1.638 1.619 -0.236 2.315 sum 13.757 -19.172 -2.259 23.705 Atomic orbital electron populations 1.70189 1.08011 1.28641 1.47968 1.26129 0.95948 1.03310 0.93650 0.84944 0.78194 0.75944 0.78831 1.19228 1.20297 1.18179 1.23207 0.95367 0.91969 1.58990 0.89900 1.85586 1.10330 0.99141 1.97048 1.23350 1.03650 0.94159 1.06724 1.20130 0.86229 0.86656 0.74926 1.90685 1.17312 1.86016 1.50153 1.45679 1.10454 1.04242 1.75236 1.22488 0.97336 0.80921 0.98373 0.90073 1.22854 1.02428 0.97088 0.94819 1.22300 0.99129 0.93912 0.99702 1.22401 1.01781 0.94405 0.97190 1.24020 0.82065 0.92969 0.83597 1.89254 1.64409 1.59750 1.16905 1.24640 0.89340 0.94389 0.98647 1.24497 0.96339 1.05425 0.79467 1.88802 1.29565 1.83582 1.28223 0.91967 0.87338 0.87246 0.74621 0.90107 0.92086 0.90696 0.88374 0.88739 0.87988 0.91868 0.84768 0.86187 0.88331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.26 13.22 21.65 0.29 -55.97 16 2 C 0.01 0.82 5.49 84.86 0.47 1.29 16 3 Si 1.00 43.58 29.55 68.60 2.03 45.61 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 6 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 7 C -0.55 -31.43 9.50 67.95 0.65 -30.79 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.33 20.57 -56.49 -1.16 -9.49 16 10 C -0.13 -5.19 6.16 71.24 0.44 -4.76 16 11 C 0.53 20.73 7.85 87.66 0.69 21.42 16 12 O -0.56 -27.08 15.51 -3.03 -0.05 -27.13 16 13 N -0.70 -20.10 5.09 -437.85 -2.23 -22.33 16 14 C 0.11 3.08 2.89 45.98 0.13 3.21 16 15 H 0.08 2.67 7.48 -2.38 -0.02 2.65 16 16 C -0.13 -3.09 6.58 31.95 0.21 -2.88 16 17 C -0.11 -1.84 6.85 31.74 0.22 -1.63 16 18 C -0.12 -1.94 6.43 31.23 0.20 -1.74 16 19 C 0.25 5.28 1.31 31.09 0.04 5.33 16 20 O -0.38 -8.58 10.89 -126.22 -1.37 -9.96 16 21 C 0.01 0.09 7.94 72.65 0.58 0.67 16 22 C 0.02 0.24 8.08 72.65 0.59 0.83 16 23 O -0.38 -7.14 9.13 -126.22 -1.15 -8.29 16 24 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 25 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 26 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 27 H 0.42 9.83 7.20 -92.71 -0.67 9.16 16 28 H 0.08 1.78 8.14 -2.38 -0.02 1.77 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.09 1.40 7.96 -2.39 -0.02 1.38 16 33 H 0.10 1.39 7.96 -2.39 -0.02 1.37 16 34 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -76.83 322.50 0.96 -75.86 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.41 Total: 20.75 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 4.20 Total: -9.04 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -1.94 Total: -78.30 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -2.57 Total: -45.38 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Total: -76.83 0.96 -75.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715985613.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.127 kcal (2) G-P(sol) polarization free energy of solvation -76.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds