Wall clock time and date at job start Wed Apr 15 2020 11:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 119.99718 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99677 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99857 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.38796 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00235 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00161 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00265 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47338 * 180.02562 * 10 9 7 12 12 O 1.21287 * 120.00056 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00396 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00328 * 179.97438 * 13 11 10 15 15 H 1.08997 * 110.04590 * 324.99283 * 14 13 11 16 16 C 1.54020 * 110.06112 * 86.45086 * 14 13 11 17 17 C 1.54316 * 106.57539 * 118.83882 * 16 14 13 18 18 C 1.55000 * 104.26403 * 23.48948 * 17 16 14 19 19 C 1.53651 * 110.05910 * 203.47568 * 14 13 11 20 20 O 1.43053 * 110.65595 * 98.84651 * 19 14 13 21 21 C 1.44950 * 104.61069 * 213.71505 * 20 19 14 22 22 C 1.54965 * 101.82270 * 35.40795 * 21 20 19 23 23 O 1.42685 * 110.85008 * 336.98258 * 19 14 13 24 24 H 0.97001 * 119.99591 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46589 * 299.99965 * 10 9 7 26 26 H 1.08997 * 109.47188 * 59.99864 * 10 9 7 27 27 H 0.97008 * 119.99794 * 359.97438 * 13 11 10 28 28 H 1.09000 * 110.03560 * 238.12002 * 16 14 13 29 29 H 1.09001 * 110.03747 * 359.51217 * 16 14 13 30 30 H 1.08999 * 110.47632 * 142.18598 * 17 16 14 31 31 H 1.08998 * 110.47498 * 264.79382 * 17 16 14 32 32 H 1.08997 * 110.76382 * 80.98056 * 18 17 16 33 33 H 1.09000 * 110.76271 * 204.18870 * 18 17 16 34 34 H 1.08996 * 110.96370 * 277.27071 * 21 20 19 35 35 H 1.09007 * 110.95665 * 153.53678 * 21 20 19 36 36 H 1.09003 * 110.69408 * 206.42114 * 22 21 20 37 37 H 1.08997 * 110.84633 * 83.29163 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1041 1.6965 -1.2125 5 1 3.1040 1.6965 1.2125 6 1 1.2853 2.7465 -0.0006 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0021 11 6 1.9876 -5.3027 0.0017 12 8 0.7913 -5.5023 0.0009 13 7 2.8443 -6.3431 0.0022 14 6 2.3306 -7.7150 0.0024 15 1 1.4140 -7.7707 0.5895 16 6 2.0619 -8.1787 -1.4416 17 6 2.9753 -9.3976 -1.6897 18 6 3.2625 -9.9545 -0.2720 19 6 3.3854 -8.6726 0.5779 20 8 3.1096 -8.9605 1.9517 21 6 4.4152 -9.1140 2.5624 22 6 5.2532 -8.0653 1.7881 23 8 4.6945 -8.1178 0.4576 24 1 -0.4849 -0.8401 -0.0004 25 1 3.1252 -3.7316 -0.8875 26 1 3.1239 -3.7309 0.8925 27 1 3.8012 -6.1834 0.0025 28 1 1.0165 -8.4666 -1.5529 29 1 2.3056 -7.3798 -2.1419 30 1 2.4600 -10.1433 -2.2951 31 1 3.9020 -9.0875 -2.1725 32 1 2.4338 -10.5709 0.0762 33 1 4.1943 -10.5200 -0.2604 34 1 4.8047 -10.1194 2.4026 35 1 4.3788 -8.8761 3.6255 36 1 6.3061 -8.3471 1.7751 37 1 5.1269 -7.0725 2.2199 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715985616.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:17 Heat of formation + Delta-G solvation = -132.148635 kcal Electronic energy + Delta-G solvation = -21005.715515 eV Core-core repulsion = 17681.062973 eV Total energy + Delta-G solvation = -3324.652542 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.33193 -39.08517 -36.75325 -35.43274 -33.51604 -32.50634 -30.22227 -29.78729 -27.53953 -26.42106 -24.78640 -23.67882 -21.43822 -20.89083 -19.88063 -18.40591 -17.57784 -17.38196 -16.56077 -16.29411 -15.76358 -14.97572 -14.87489 -14.56989 -14.22965 -13.98528 -13.81468 -13.35631 -13.19861 -13.10189 -12.89885 -12.38276 -12.35921 -12.22243 -11.83941 -11.68956 -11.48911 -11.38477 -10.90518 -10.86382 -10.53956 -10.16124 -9.95368 -9.55544 -9.45274 -9.00250 -8.85965 -8.19835 -6.64561 -6.60366 -3.97798 2.81441 3.02889 3.12642 3.36733 3.39128 3.48479 3.58189 3.67908 4.11698 4.24106 4.27031 4.33271 4.55702 4.70015 4.78842 5.05013 5.07751 5.13319 5.17205 5.24307 5.25756 5.34367 5.38155 5.47128 5.49398 5.58554 5.74776 5.76487 5.80529 6.02761 6.05125 6.08393 6.59372 6.81980 7.72826 7.93729 8.51986 8.57819 9.29158 10.83631 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.029051 B = 0.003643 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.597024 B = 7683.986399 C = 8119.235827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.035 3.965 3 Si 1.084 2.916 4 H -0.285 1.285 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.608 4.608 8 H 0.065 0.935 9 S -0.115 6.115 10 C -0.129 4.129 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.723 5.723 14 C 0.143 3.857 15 H 0.107 0.893 16 C -0.133 4.133 17 C -0.118 4.118 18 C -0.141 4.141 19 C 0.248 3.752 20 O -0.362 6.362 21 C 0.016 3.984 22 C 0.017 3.983 23 O -0.367 6.367 24 H 0.278 0.722 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.403 0.597 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.721 -21.512 1.726 25.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.175 4.175 3 Si 0.910 3.090 4 H -0.211 1.211 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.756 4.756 8 H 0.083 0.917 9 S 0.111 5.889 10 C -0.280 4.280 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.379 5.379 14 C 0.036 3.964 15 H 0.125 0.875 16 C -0.171 4.171 17 C -0.156 4.156 18 C -0.179 4.179 19 C 0.170 3.830 20 O -0.282 6.282 21 C -0.061 4.061 22 C -0.059 4.059 23 O -0.287 6.287 24 H 0.090 0.910 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.239 0.761 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.386 -20.150 1.636 22.728 hybrid contribution 2.426 -1.363 0.186 2.789 sum 12.812 -21.513 1.822 25.105 Atomic orbital electron populations 1.70799 1.06702 1.30975 1.43366 1.26049 0.96323 1.02106 0.93026 0.83331 0.74753 0.74215 0.76689 1.21147 1.21162 1.20280 1.23710 0.96027 0.92246 1.63602 0.91653 1.84808 1.08111 0.98719 1.97217 1.23301 1.05063 0.94501 1.05183 1.20298 0.86589 0.86258 0.75141 1.90696 1.15324 1.85528 1.47705 1.45919 1.10443 1.04385 1.77182 1.21629 0.96737 0.81171 0.96851 0.87545 1.22573 1.00544 0.98271 0.95758 1.22302 1.00127 0.97303 0.95846 1.22981 1.03175 0.95934 0.95854 1.24022 0.83247 0.92656 0.83082 1.89259 1.26848 1.91137 1.20947 1.24422 0.82562 0.99279 0.99818 1.24329 0.99173 1.00234 0.82194 1.88782 1.28488 1.83857 1.27571 0.90982 0.88970 0.89093 0.76074 0.90444 0.90388 0.90888 0.90925 0.89188 0.90265 0.90490 0.87217 0.87942 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.81 13.67 55.49 0.76 -27.05 16 2 C 0.04 1.04 5.49 -17.43 -0.10 0.95 16 3 Si 1.08 25.15 29.92 -169.99 -5.09 20.07 16 4 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.61 -17.78 9.50 30.94 0.29 -17.48 16 8 H 0.07 1.83 7.80 -52.48 -0.41 1.42 16 9 S -0.11 -3.16 19.60 -107.50 -2.11 -5.26 16 10 C -0.13 -2.72 6.16 36.00 0.22 -2.50 16 11 C 0.53 10.40 7.84 -10.99 -0.09 10.32 16 12 O -0.52 -12.06 15.54 5.55 0.09 -11.98 16 13 N -0.72 -10.88 4.94 -52.96 -0.26 -11.14 16 14 C 0.14 1.94 2.94 -67.06 -0.20 1.75 16 15 H 0.11 1.69 7.53 -51.93 -0.39 1.30 16 16 C -0.13 -1.59 6.60 -25.51 -0.17 -1.76 16 17 C -0.12 -1.08 6.83 -24.99 -0.17 -1.25 16 18 C -0.14 -1.27 6.31 -25.00 -0.16 -1.43 16 19 C 0.25 2.76 1.16 -25.72 -0.03 2.73 16 20 O -0.36 -4.18 11.04 -59.03 -0.65 -4.84 16 21 C 0.02 0.12 7.96 38.20 0.30 0.42 16 22 C 0.02 0.13 8.08 38.20 0.31 0.44 16 23 O -0.37 -3.82 9.27 -59.03 -0.55 -4.37 16 24 H 0.28 8.93 7.12 -40.82 -0.29 8.64 16 25 H 0.09 1.81 8.14 -51.91 -0.42 1.38 16 26 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 27 H 0.40 5.30 7.18 -40.82 -0.29 5.01 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.08 1.03 7.92 -51.93 -0.41 0.62 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 321.28 15.07 4.84 4.84 Total: -1.00 -35.61 321.28 -7.99 -43.59 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.24 Total: 3.96 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 0.22 Total: -7.82 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.50 Total: -38.20 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -1.11 Total: -21.18 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.09 Total: 20.07 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.11 Total: -5.26 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.61 -7.99 -43.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715985616.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.554 kcal (2) G-P(sol) polarization free energy of solvation -35.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds