Wall clock time and date at job start Wed Apr 15 2020 11:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 119.99718 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99677 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99857 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.38796 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00235 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00161 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00265 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47338 * 180.02562 * 10 9 7 12 12 O 1.21287 * 120.00056 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00396 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00328 * 179.97438 * 13 11 10 15 15 H 1.08997 * 110.04590 * 324.99283 * 14 13 11 16 16 C 1.54020 * 110.06112 * 86.45086 * 14 13 11 17 17 C 1.54316 * 106.57539 * 118.83882 * 16 14 13 18 18 C 1.55000 * 104.26403 * 23.48948 * 17 16 14 19 19 C 1.53651 * 110.05910 * 203.47568 * 14 13 11 20 20 O 1.43053 * 110.65595 * 98.84651 * 19 14 13 21 21 C 1.44950 * 104.61069 * 213.71505 * 20 19 14 22 22 C 1.54965 * 101.82270 * 35.40795 * 21 20 19 23 23 O 1.42685 * 110.85008 * 336.98258 * 19 14 13 24 24 H 0.97001 * 119.99591 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46589 * 299.99965 * 10 9 7 26 26 H 1.08997 * 109.47188 * 59.99864 * 10 9 7 27 27 H 0.97008 * 119.99794 * 359.97438 * 13 11 10 28 28 H 1.09000 * 110.03560 * 238.12002 * 16 14 13 29 29 H 1.09001 * 110.03747 * 359.51217 * 16 14 13 30 30 H 1.08999 * 110.47632 * 142.18598 * 17 16 14 31 31 H 1.08998 * 110.47498 * 264.79382 * 17 16 14 32 32 H 1.08997 * 110.76382 * 80.98056 * 18 17 16 33 33 H 1.09000 * 110.76271 * 204.18870 * 18 17 16 34 34 H 1.08996 * 110.96370 * 277.27071 * 21 20 19 35 35 H 1.09007 * 110.95665 * 153.53678 * 21 20 19 36 36 H 1.09003 * 110.69408 * 206.42114 * 22 21 20 37 37 H 1.08997 * 110.84633 * 83.29163 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1041 1.6965 -1.2125 5 1 3.1040 1.6965 1.2125 6 1 1.2853 2.7465 -0.0006 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0021 11 6 1.9876 -5.3027 0.0017 12 8 0.7913 -5.5023 0.0009 13 7 2.8443 -6.3431 0.0022 14 6 2.3306 -7.7150 0.0024 15 1 1.4140 -7.7707 0.5895 16 6 2.0619 -8.1787 -1.4416 17 6 2.9753 -9.3976 -1.6897 18 6 3.2625 -9.9545 -0.2720 19 6 3.3854 -8.6726 0.5779 20 8 3.1096 -8.9605 1.9517 21 6 4.4152 -9.1140 2.5624 22 6 5.2532 -8.0653 1.7881 23 8 4.6945 -8.1178 0.4576 24 1 -0.4849 -0.8401 -0.0004 25 1 3.1252 -3.7316 -0.8875 26 1 3.1239 -3.7309 0.8925 27 1 3.8012 -6.1834 0.0025 28 1 1.0165 -8.4666 -1.5529 29 1 2.3056 -7.3798 -2.1419 30 1 2.4600 -10.1433 -2.2951 31 1 3.9020 -9.0875 -2.1725 32 1 2.4338 -10.5709 0.0762 33 1 4.1943 -10.5200 -0.2604 34 1 4.8047 -10.1194 2.4026 35 1 4.3788 -8.8761 3.6255 36 1 6.3061 -8.3471 1.7751 37 1 5.1269 -7.0725 2.2199 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715985616.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:17 Heat of formation + Delta-G solvation = -158.126801 kcal Electronic energy + Delta-G solvation = -21006.842012 eV Core-core repulsion = 17681.062973 eV Total energy + Delta-G solvation = -3325.779039 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.18271 -40.52693 -37.75083 -36.20304 -34.85252 -34.73969 -31.37740 -30.83950 -28.57404 -27.43645 -26.97457 -24.29514 -22.56001 -21.83596 -21.13015 -20.45371 -18.72390 -18.25715 -17.67175 -17.37279 -16.85393 -16.45748 -16.37537 -15.75530 -15.61219 -15.27193 -14.86170 -14.72111 -14.48399 -14.21488 -14.02451 -13.93477 -13.71127 -13.52801 -13.06313 -12.75870 -12.71579 -12.28431 -12.16696 -11.95350 -11.69611 -11.57791 -11.24036 -11.10373 -11.09424 -10.79839 -10.34694 -10.14551 -8.93614 -8.89016 -6.29118 1.14365 1.44895 1.51533 1.60691 1.81028 1.99171 2.33265 2.49259 2.68916 3.01648 3.12078 3.31333 3.49907 3.64474 3.80173 3.95807 4.02370 4.10840 4.12450 4.28761 4.31700 4.33028 4.38130 4.51777 4.57421 4.71024 4.80291 4.84009 4.91794 5.05539 5.06887 5.22339 5.38959 5.62910 6.03764 6.13667 6.36368 7.05232 7.09195 8.49858 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.029051 B = 0.003643 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.597024 B = 7683.986399 C = 8119.235827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.018 4.018 3 Si 1.137 2.863 4 H -0.263 1.263 5 H -0.263 1.263 6 H -0.280 1.280 7 C -0.615 4.615 8 H 0.075 0.925 9 S -0.191 6.191 10 C -0.108 4.108 11 C 0.534 3.466 12 O -0.563 6.563 13 N -0.699 5.699 14 C 0.132 3.868 15 H 0.077 0.923 16 C -0.133 4.133 17 C -0.108 4.108 18 C -0.133 4.133 19 C 0.252 3.748 20 O -0.390 6.390 21 C 0.011 3.989 22 C 0.011 3.989 23 O -0.376 6.376 24 H 0.260 0.740 25 H 0.111 0.889 26 H 0.110 0.890 27 H 0.415 0.585 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.123 0.877 36 H 0.133 0.867 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.861 -22.666 1.757 27.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.221 4.221 3 Si 0.955 3.045 4 H -0.188 1.188 5 H -0.187 1.187 6 H -0.205 1.205 7 C -0.763 4.763 8 H 0.093 0.907 9 S 0.035 5.965 10 C -0.259 4.259 11 C 0.319 3.681 12 O -0.441 6.441 13 N -0.354 5.354 14 C 0.026 3.974 15 H 0.096 0.904 16 C -0.172 4.172 17 C -0.146 4.146 18 C -0.171 4.171 19 C 0.174 3.826 20 O -0.310 6.310 21 C -0.064 4.064 22 C -0.065 4.065 23 O -0.297 6.297 24 H 0.071 0.929 25 H 0.129 0.871 26 H 0.128 0.872 27 H 0.254 0.746 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.141 0.859 36 H 0.151 0.849 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.582 -21.365 1.672 25.372 hybrid contribution 1.508 -1.127 0.228 1.896 sum 15.091 -22.492 1.900 27.152 Atomic orbital electron populations 1.70921 1.08024 1.29980 1.45849 1.27859 0.96292 1.06366 0.91585 0.82714 0.73937 0.69422 0.78462 1.18767 1.18750 1.20471 1.24044 0.96536 0.92765 1.62950 0.90673 1.85049 1.12915 1.01033 1.97474 1.23196 1.02296 0.93505 1.06927 1.20065 0.86295 0.86583 0.75127 1.90685 1.17179 1.85981 1.50222 1.45688 1.10464 1.04276 1.75007 1.21848 0.96958 0.80645 0.97980 0.90447 1.22540 1.01208 0.99303 0.94130 1.22277 0.99686 0.96175 0.96471 1.22974 1.04429 0.94924 0.94803 1.23946 0.82649 0.92645 0.83405 1.89238 1.29234 1.91252 1.21318 1.24713 0.80846 1.00525 1.00353 1.24563 1.00736 1.00174 0.80984 1.88767 1.27871 1.83971 1.29080 0.92898 0.87083 0.87227 0.74644 0.90919 0.91807 0.88933 0.90420 0.88757 0.88165 0.88216 0.85900 0.84885 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.67 13.67 21.65 0.30 -58.37 16 2 C -0.02 -1.05 5.49 84.86 0.47 -0.59 16 3 Si 1.14 49.63 29.92 68.60 2.05 51.68 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.62 -36.06 9.50 67.95 0.65 -35.41 16 8 H 0.08 4.12 7.80 -2.91 -0.02 4.10 16 9 S -0.19 -10.81 19.60 -56.49 -1.11 -11.92 16 10 C -0.11 -4.49 6.16 71.23 0.44 -4.06 16 11 C 0.53 21.12 7.84 87.66 0.69 21.81 16 12 O -0.56 -27.22 15.54 -3.05 -0.05 -27.26 16 13 N -0.70 -20.73 4.94 -439.87 -2.17 -22.90 16 14 C 0.13 3.57 2.94 45.56 0.13 3.71 16 15 H 0.08 2.57 7.53 -2.39 -0.02 2.55 16 16 C -0.13 -3.14 6.60 31.39 0.21 -2.93 16 17 C -0.11 -1.73 6.83 31.72 0.22 -1.52 16 18 C -0.13 -2.04 6.31 31.72 0.20 -1.84 16 19 C 0.25 5.18 1.16 31.25 0.04 5.22 16 20 O -0.39 -8.48 11.04 -126.23 -1.39 -9.87 16 21 C 0.01 0.14 7.96 72.65 0.58 0.71 16 22 C 0.01 0.14 8.08 72.65 0.59 0.72 16 23 O -0.38 -6.89 9.27 -126.23 -1.17 -8.06 16 24 H 0.26 17.42 7.12 -92.71 -0.66 16.76 16 25 H 0.11 4.21 8.14 -2.39 -0.02 4.19 16 26 H 0.11 4.16 8.14 -2.40 -0.02 4.14 16 27 H 0.41 10.30 7.18 -92.70 -0.67 9.64 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.06 1.67 7.92 -2.39 -0.02 1.66 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -79.73 321.28 1.18 -78.55 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 0.52 Total: 22.32 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 4.20 Total: -14.17 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -1.88 Total: -81.27 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -2.61 Total: -45.19 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 2.05 Total: 51.68 kcal Atomic # 16 Polarization: -10.81 SS G_CDS: -1.11 Total: -11.92 kcal Total: -79.73 1.18 -78.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715985616.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.577 kcal (2) G-P(sol) polarization free energy of solvation -79.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds