Wall clock time and date at job start Wed Apr 15 2020 11:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86799 * 119.99957 * 2 1 4 4 H 1.48505 * 109.47193 * 269.99688 * 3 2 1 5 5 H 1.48495 * 109.47330 * 29.99952 * 3 2 1 6 6 H 1.48503 * 109.47466 * 149.99904 * 3 2 1 7 7 C 1.38802 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00042 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00061 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00196 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47278 * 180.02562 * 10 9 7 12 12 O 1.20824 * 119.99860 * 0.02562 * 11 10 9 13 13 O 1.34230 * 120.00189 * 179.97438 * 11 10 9 14 14 C 1.45198 * 117.00333 * 179.97438 * 13 11 10 15 15 C 1.50691 * 109.47322 * 180.02562 * 14 13 11 16 16 O 1.21278 * 120.00190 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00270 * 180.02562 * 15 14 13 18 18 C 1.46504 * 120.00207 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.46983 * 179.97438 * 18 17 15 20 20 C 1.53786 * 113.61503 * 85.86203 * 19 18 17 21 21 C 1.54049 * 86.98426 * 140.01654 * 20 19 18 22 22 C 1.53781 * 113.61337 * 183.46996 * 19 18 17 23 23 H 0.96998 * 119.99713 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46912 * 60.00120 * 10 9 7 25 25 H 1.09005 * 109.47253 * 300.00399 * 10 9 7 26 26 H 1.09000 * 109.46798 * 60.00512 * 14 13 11 27 27 H 1.08994 * 109.47193 * 300.01069 * 14 13 11 28 28 H 0.96999 * 120.00146 * 359.97438 * 17 15 14 29 29 H 1.09000 * 109.47232 * 59.99775 * 18 17 15 30 30 H 1.08997 * 109.47041 * 299.99591 * 18 17 15 31 31 H 1.09002 * 112.85017 * 314.66585 * 19 18 17 32 32 H 1.08992 * 113.61675 * 254.61398 * 20 19 18 33 33 H 1.09000 * 113.60973 * 25.51686 * 20 19 18 34 34 H 1.09005 * 113.62125 * 220.02158 * 21 20 19 35 35 H 1.09003 * 113.61268 * 89.11946 * 21 20 19 36 36 H 1.08999 * 113.61567 * 334.48261 * 22 19 18 37 37 H 1.09000 * 113.61379 * 105.30384 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7956 -5.5015 -0.0010 13 8 2.8407 -6.3389 -0.0007 14 6 2.2611 -7.6702 -0.0007 15 6 3.3631 -8.6979 -0.0008 16 8 4.5229 -8.3433 -0.0004 17 7 3.0600 -10.0111 -0.0014 18 6 4.1315 -11.0103 -0.0009 19 6 3.5207 -12.4131 -0.0011 20 6 3.1820 -12.9374 -1.4066 21 6 3.7037 -14.3072 -0.9326 22 6 4.5642 -13.5393 0.0847 23 1 -0.4850 0.8401 -0.0004 24 1 3.1245 -3.7314 0.8906 25 1 3.1246 -3.7314 -0.8894 26 1 1.6446 -7.7980 -0.8905 27 1 1.6452 -7.7983 0.8894 28 1 2.1324 -10.2948 -0.0013 29 1 4.7471 -10.8825 0.8895 30 1 4.7482 -10.8821 -0.8905 31 1 2.7040 -12.5192 0.7130 32 1 2.1154 -12.9285 -1.6307 33 1 3.7853 -12.4900 -2.1965 34 1 4.2867 -14.8370 -1.6860 35 1 2.9371 -14.9312 -0.4732 36 1 5.5446 -13.2563 -0.2984 37 1 4.6136 -14.0151 1.0641 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731240762.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:19 Heat of formation + Delta-G solvation = -109.294301 kcal Electronic energy + Delta-G solvation = -19227.261654 eV Core-core repulsion = 15903.600151 eV Total energy + Delta-G solvation = -3323.661503 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.48111 -39.78656 -38.85035 -36.10346 -34.72808 -32.48128 -30.59994 -29.36337 -27.30878 -26.09658 -25.53565 -23.22107 -21.27809 -20.86049 -19.82246 -18.08411 -17.53540 -17.22292 -16.73390 -16.40124 -15.88460 -15.43767 -15.18194 -14.83905 -14.70273 -14.10765 -14.05591 -13.70148 -13.15584 -12.94114 -12.68362 -12.46184 -12.40390 -12.17922 -11.98753 -11.11161 -11.09655 -11.06111 -10.91368 -10.82206 -10.76510 -10.66334 -10.19132 -9.98836 -9.87397 -9.40800 -9.10975 -8.36981 -6.60521 -6.27108 -3.99750 2.19593 2.35465 2.59273 3.01503 3.21721 3.27004 3.31678 3.58732 4.06975 4.11843 4.15497 4.19850 4.36223 4.47212 4.77060 4.94853 4.95312 4.99943 5.08977 5.14355 5.22633 5.26090 5.30336 5.43307 5.46941 5.50087 5.53209 5.71456 5.79176 5.94651 6.09378 6.10601 6.53837 7.11528 7.56492 7.91849 8.08753 8.31266 9.18664 10.80417 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.063939 B = 0.002215 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.809063 B =12637.032228 C =12935.323449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.922 3.078 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.077 0.923 9 S -0.058 6.058 10 C -0.127 4.127 11 C 0.481 3.519 12 O -0.488 6.488 13 O -0.337 6.337 14 C 0.047 3.953 15 C 0.516 3.484 16 O -0.515 6.515 17 N -0.729 5.729 18 C 0.131 3.869 19 C -0.126 4.126 20 C -0.138 4.138 21 C -0.143 4.143 22 C -0.131 4.131 23 H 0.269 0.731 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.403 0.597 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.998 -26.830 -0.598 27.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.748 3.252 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.684 4.684 8 H 0.095 0.905 9 S 0.168 5.832 10 C -0.275 4.275 11 C 0.323 3.677 12 O -0.374 6.374 13 O -0.254 6.254 14 C -0.031 4.031 15 C 0.301 3.699 16 O -0.389 6.389 17 N -0.384 5.384 18 C 0.008 3.992 19 C -0.145 4.145 20 C -0.176 4.176 21 C -0.181 4.181 22 C -0.169 4.169 23 H 0.079 0.921 24 H 0.124 0.876 25 H 0.123 0.877 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.237 0.763 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.220 -26.733 -0.595 27.244 hybrid contribution 1.246 0.993 0.013 1.593 sum 6.466 -25.740 -0.582 26.546 Atomic orbital electron populations 1.70010 1.05982 1.27634 1.46666 1.25007 0.95079 0.99128 0.94322 0.86109 0.79425 0.81213 0.78430 1.20187 1.20719 1.19553 1.22852 0.95090 0.91087 1.59329 0.90496 1.85366 1.04293 0.96600 1.96914 1.23310 1.07057 0.90327 1.06822 1.23448 0.85096 0.87013 0.72158 1.90668 1.16817 1.85515 1.44375 1.86605 1.40307 1.13607 1.84850 1.22562 0.94492 0.80942 1.05090 1.20190 0.90153 0.82995 0.76599 1.90761 1.20577 1.80359 1.47227 1.45814 1.10611 1.05159 1.76796 1.21402 0.89601 0.85601 1.02636 1.22847 0.99750 0.93153 0.98740 1.23069 1.01651 0.96558 0.96290 1.22859 0.99671 0.96487 0.99047 1.22872 0.97923 0.96079 1.00049 0.92078 0.87646 0.87653 0.88137 0.88149 0.76319 0.91195 0.91138 0.88454 0.91241 0.89771 0.91271 0.90102 0.89668 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.78 13.22 55.49 0.73 -25.04 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -15.11 9.50 30.94 0.29 -14.82 16 8 H 0.08 2.06 7.80 -52.49 -0.41 1.65 16 9 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 10 C -0.13 -2.65 6.27 36.00 0.23 -2.43 16 11 C 0.48 9.32 7.97 36.00 0.29 9.60 16 12 O -0.49 -10.37 15.61 -18.75 -0.29 -10.66 16 13 O -0.34 -5.74 9.75 -45.90 -0.45 -6.19 16 14 C 0.05 0.59 5.94 36.00 0.21 0.80 16 15 C 0.52 6.35 7.91 -10.99 -0.09 6.26 16 16 O -0.52 -8.67 16.50 -14.10 -0.23 -8.90 16 17 N -0.73 -5.90 5.56 -60.29 -0.33 -6.23 16 18 C 0.13 0.97 5.50 -4.04 -0.02 0.95 16 19 C -0.13 -0.63 3.75 -89.80 -0.34 -0.97 16 20 C -0.14 -0.67 7.65 -25.77 -0.20 -0.87 16 21 C -0.14 -0.63 8.09 -25.78 -0.21 -0.84 16 22 C -0.13 -0.61 7.64 -25.92 -0.20 -0.81 16 23 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.11 2.06 8.14 -51.91 -0.42 1.63 16 25 H 0.11 2.05 8.14 -51.91 -0.42 1.63 16 26 H 0.10 1.08 8.13 -51.93 -0.42 0.66 16 27 H 0.10 1.08 8.13 -51.93 -0.42 0.65 16 28 H 0.40 2.07 8.47 -40.82 -0.35 1.72 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.59 7.88 -51.93 -0.41 0.18 16 31 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.45 7.92 -51.93 -0.41 0.04 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.40 8.10 -51.93 -0.42 -0.02 16 37 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 337.70 15.07 5.09 5.09 Total: -1.00 -34.94 337.70 -8.20 -43.14 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -5.36 Total: -2.60 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -0.12 Total: -1.12 kcal Atomic # 7 Polarization: -31.67 SS G_CDS: 0.40 Total: -31.27 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.97 Total: -25.75 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.94 -8.20 -43.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731240762.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.155 kcal (2) G-P(sol) polarization free energy of solvation -34.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds