Wall clock time and date at job start Wed Apr 15 2020 11:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86799 * 119.99957 * 2 1 4 4 H 1.48505 * 109.47193 * 269.99688 * 3 2 1 5 5 H 1.48495 * 109.47330 * 29.99952 * 3 2 1 6 6 H 1.48503 * 109.47466 * 149.99904 * 3 2 1 7 7 C 1.38802 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00042 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00061 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00196 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47278 * 180.02562 * 10 9 7 12 12 O 1.20824 * 119.99860 * 0.02562 * 11 10 9 13 13 O 1.34230 * 120.00189 * 179.97438 * 11 10 9 14 14 C 1.45198 * 117.00333 * 179.97438 * 13 11 10 15 15 C 1.50691 * 109.47322 * 180.02562 * 14 13 11 16 16 O 1.21278 * 120.00190 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00270 * 180.02562 * 15 14 13 18 18 C 1.46504 * 120.00207 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.46983 * 179.97438 * 18 17 15 20 20 C 1.53786 * 113.61503 * 85.86203 * 19 18 17 21 21 C 1.54049 * 86.98426 * 140.01654 * 20 19 18 22 22 C 1.53781 * 113.61337 * 183.46996 * 19 18 17 23 23 H 0.96998 * 119.99713 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46912 * 60.00120 * 10 9 7 25 25 H 1.09005 * 109.47253 * 300.00399 * 10 9 7 26 26 H 1.09000 * 109.46798 * 60.00512 * 14 13 11 27 27 H 1.08994 * 109.47193 * 300.01069 * 14 13 11 28 28 H 0.96999 * 120.00146 * 359.97438 * 17 15 14 29 29 H 1.09000 * 109.47232 * 59.99775 * 18 17 15 30 30 H 1.08997 * 109.47041 * 299.99591 * 18 17 15 31 31 H 1.09002 * 112.85017 * 314.66585 * 19 18 17 32 32 H 1.08992 * 113.61675 * 254.61398 * 20 19 18 33 33 H 1.09000 * 113.60973 * 25.51686 * 20 19 18 34 34 H 1.09005 * 113.62125 * 220.02158 * 21 20 19 35 35 H 1.09003 * 113.61268 * 89.11946 * 21 20 19 36 36 H 1.08999 * 113.61567 * 334.48261 * 22 19 18 37 37 H 1.09000 * 113.61379 * 105.30384 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7956 -5.5015 -0.0010 13 8 2.8407 -6.3389 -0.0007 14 6 2.2611 -7.6702 -0.0007 15 6 3.3631 -8.6979 -0.0008 16 8 4.5229 -8.3433 -0.0004 17 7 3.0600 -10.0111 -0.0014 18 6 4.1315 -11.0103 -0.0009 19 6 3.5207 -12.4131 -0.0011 20 6 3.1820 -12.9374 -1.4066 21 6 3.7037 -14.3072 -0.9326 22 6 4.5642 -13.5393 0.0847 23 1 -0.4850 0.8401 -0.0004 24 1 3.1245 -3.7314 0.8906 25 1 3.1246 -3.7314 -0.8894 26 1 1.6446 -7.7980 -0.8905 27 1 1.6452 -7.7983 0.8894 28 1 2.1324 -10.2948 -0.0013 29 1 4.7471 -10.8825 0.8895 30 1 4.7482 -10.8821 -0.8905 31 1 2.7040 -12.5192 0.7130 32 1 2.1154 -12.9285 -1.6307 33 1 3.7853 -12.4900 -2.1965 34 1 4.2867 -14.8370 -1.6860 35 1 2.9371 -14.9312 -0.4732 36 1 5.5446 -13.2563 -0.2984 37 1 4.6136 -14.0151 1.0641 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731240762.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:18 Heat of formation + Delta-G solvation = -131.670121 kcal Electronic energy + Delta-G solvation = -19228.231942 eV Core-core repulsion = 15903.600151 eV Total energy + Delta-G solvation = -3324.631792 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.75095 -40.74957 -39.53246 -37.52587 -35.58489 -34.61244 -31.93269 -30.49777 -28.20205 -27.65264 -26.47354 -23.79867 -22.58985 -21.87087 -20.30061 -19.93465 -18.81472 -18.49565 -17.98604 -17.25547 -16.90654 -16.83164 -16.53492 -16.13621 -15.87515 -15.34563 -15.00895 -14.74213 -14.55527 -14.25929 -13.77325 -13.53507 -13.32132 -13.17689 -12.89867 -12.89131 -12.67512 -12.62723 -11.93983 -11.80747 -11.72392 -11.55266 -11.38154 -11.16828 -11.15994 -10.95407 -10.40023 -10.21152 -8.73388 -8.37842 -6.17132 0.84549 1.05215 1.38167 1.38452 1.43316 1.53014 1.65126 2.23252 2.30445 2.97225 3.26875 3.49426 3.66244 3.72765 3.79436 3.85947 3.99373 4.01654 4.06228 4.16499 4.30386 4.44313 4.50052 4.69734 4.88334 4.89531 4.97169 5.09406 5.11707 5.11868 5.24426 5.38656 5.41553 5.61229 6.18227 6.34433 6.60841 7.04202 7.05807 8.71309 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.063939 B = 0.002215 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.809063 B =12637.032228 C =12935.323449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.017 3.983 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.551 4.551 8 H 0.084 0.916 9 S -0.128 6.128 10 C -0.111 4.111 11 C 0.494 3.506 12 O -0.511 6.511 13 O -0.342 6.342 14 C 0.040 3.960 15 C 0.519 3.481 16 O -0.567 6.567 17 N -0.706 5.706 18 C 0.130 3.870 19 C -0.118 4.118 20 C -0.140 4.140 21 C -0.141 4.141 22 C -0.133 4.133 23 H 0.273 0.727 24 H 0.120 0.880 25 H 0.120 0.880 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.420 0.580 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.597 -27.786 -0.508 28.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.188 4.188 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.698 4.698 8 H 0.102 0.898 9 S 0.099 5.901 10 C -0.260 4.260 11 C 0.336 3.664 12 O -0.398 6.398 13 O -0.258 6.258 14 C -0.037 4.037 15 C 0.304 3.696 16 O -0.445 6.445 17 N -0.360 5.360 18 C 0.007 3.993 19 C -0.137 4.137 20 C -0.177 4.177 21 C -0.178 4.178 22 C -0.171 4.171 23 H 0.082 0.918 24 H 0.138 0.862 25 H 0.138 0.862 26 H 0.140 0.860 27 H 0.140 0.860 28 H 0.258 0.742 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.129 0.871 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.795 -27.756 -0.506 28.359 hybrid contribution 1.082 1.086 -0.020 1.533 sum 6.878 -26.670 -0.526 27.547 Atomic orbital electron populations 1.70150 1.07819 1.28818 1.47643 1.26094 0.96010 1.03185 0.93526 0.84943 0.78172 0.75980 0.78838 1.19276 1.20104 1.18415 1.23203 0.95529 0.91709 1.59398 0.89767 1.85401 1.08726 0.98762 1.97167 1.23103 1.04527 0.90057 1.08265 1.22948 0.84667 0.87066 0.71746 1.90661 1.17687 1.85865 1.45624 1.86545 1.40062 1.14996 1.84240 1.22964 0.94917 0.78549 1.07255 1.20198 0.89190 0.84075 0.76105 1.90747 1.22352 1.81284 1.50148 1.45686 1.11941 1.03844 1.74577 1.21485 0.89446 0.86652 1.01734 1.22839 1.00148 0.91355 0.99329 1.23075 1.01987 0.96808 0.95851 1.22865 0.99734 0.96304 0.98903 1.22901 0.97743 0.95944 1.00535 0.91790 0.86188 0.86179 0.86005 0.85979 0.74248 0.92091 0.92177 0.87067 0.90533 0.90544 0.91208 0.89268 0.90064 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.52 13.22 21.65 0.29 -54.23 16 2 C 0.02 0.96 5.49 84.86 0.47 1.43 16 3 Si 1.00 43.26 29.55 68.60 2.03 45.28 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 7 C -0.55 -31.10 9.50 67.95 0.65 -30.46 16 8 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 9 S -0.13 -6.89 20.57 -56.49 -1.16 -8.05 16 10 C -0.11 -4.56 6.27 71.23 0.45 -4.11 16 11 C 0.49 18.67 7.97 71.23 0.57 19.24 16 12 O -0.51 -21.40 15.61 21.97 0.34 -21.05 16 13 O -0.34 -11.24 9.75 -45.06 -0.44 -11.68 16 14 C 0.04 0.93 5.94 71.23 0.42 1.35 16 15 C 0.52 12.14 7.91 87.65 0.69 12.84 16 16 O -0.57 -18.96 16.50 15.77 0.26 -18.70 16 17 N -0.71 -10.17 5.56 -463.06 -2.57 -12.75 16 18 C 0.13 1.79 5.50 86.38 0.47 2.26 16 19 C -0.12 -0.96 3.75 -10.26 -0.04 -1.00 16 20 C -0.14 -1.11 7.65 31.21 0.24 -0.87 16 21 C -0.14 -0.98 8.09 31.21 0.25 -0.73 16 22 C -0.13 -1.04 7.64 31.12 0.24 -0.80 16 23 H 0.27 15.19 8.31 -92.71 -0.77 14.41 16 24 H 0.12 4.57 8.14 -2.39 -0.02 4.55 16 25 H 0.12 4.57 8.14 -2.39 -0.02 4.55 16 26 H 0.12 2.33 8.13 -2.39 -0.02 2.32 16 27 H 0.12 2.33 8.13 -2.39 -0.02 2.31 16 28 H 0.42 3.20 8.47 -92.71 -0.79 2.41 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 0.99 7.88 -2.39 -0.02 0.97 16 31 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.08 0.74 7.92 -2.39 -0.02 0.72 16 34 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 35 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.08 0.70 8.10 -2.39 -0.02 0.68 16 37 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -75.88 337.70 3.44 -72.44 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 0.29 Total: 9.57 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 4.41 Total: -0.84 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: -2.29 Total: -66.98 kcal Atomic # 8 Polarization: -51.59 SS G_CDS: 0.16 Total: -51.43 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -6.89 SS G_CDS: -1.16 Total: -8.05 kcal Total: -75.88 3.44 -72.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731240762.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.227 kcal (2) G-P(sol) polarization free energy of solvation -75.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds