Wall clock time and date at job start Wed Apr 15 2020 11:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99947 * 2 1 4 4 H 1.48501 * 109.47002 * 270.00583 * 3 2 1 5 5 H 1.48507 * 109.47036 * 30.00272 * 3 2 1 6 6 H 1.48494 * 109.47282 * 150.00216 * 3 2 1 7 7 C 1.37877 * 120.00419 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00417 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99980 * 359.97438 * 7 2 1 10 10 N 1.46489 * 109.47445 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00343 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99895 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00288 * 179.97438 * 11 10 9 14 14 O 1.42891 * 109.47307 * 179.97438 * 13 11 10 15 15 C 1.34908 * 117.00283 * 180.02562 * 14 13 11 16 16 O 1.21629 * 119.99688 * 0.02562 * 15 14 13 17 17 C 1.43204 * 120.00184 * 179.97438 * 15 14 13 18 18 C 9.53558 * 118.17044 * 179.97438 * 7 1 2 19 19 C 9.50225 * 151.41174 * 179.97438 * 9 1 2 20 20 C 1.39855 * 120.16637 * 129.07140 * 19 18 17 21 21 C 1.37890 * 119.82316 * 179.97438 * 20 19 18 22 22 C 1.38404 * 120.17220 * 359.97438 * 21 20 19 23 23 C 1.38409 * 120.34828 * 0.04376 * 22 21 20 24 24 C 1.37888 * 120.17293 * 359.95823 * 23 22 21 25 25 H 0.96997 * 119.99935 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.46773 * 59.99628 * 9 7 2 27 27 H 1.09006 * 109.47127 * 300.00666 * 9 7 2 28 28 H 0.96999 * 120.00182 * 359.97438 * 10 9 7 29 29 H 1.09006 * 109.46945 * 59.99992 * 13 11 10 30 30 H 1.09000 * 109.47229 * 299.99977 * 13 11 10 31 31 H 1.07999 * 120.09087 * 359.70346 * 20 19 18 32 32 H 1.07999 * 119.91206 * 179.97438 * 21 20 19 33 33 H 1.07997 * 119.82740 * 180.02562 * 22 21 20 34 34 H 1.08005 * 119.91233 * 179.97438 * 23 22 21 35 35 H 1.07996 * 120.08508 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7540 -4.8833 -0.0011 12 8 0.5616 -5.1050 -0.0011 13 6 2.7333 -6.0287 -0.0016 14 8 2.0189 -7.2662 -0.0015 15 6 2.7537 -8.3977 -0.0015 16 8 3.9683 -8.3339 -0.0010 17 6 2.1036 -9.6736 -0.0008 18 6 1.5706 -10.7197 -0.0010 19 6 0.9207 -11.9957 -0.0005 20 6 1.2806 -12.9681 -0.9390 21 6 0.6504 -14.1946 -0.9318 22 6 -0.3355 -14.4646 0.0013 23 6 -0.6975 -13.5073 0.9331 24 6 -0.0768 -12.2761 0.9388 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8902 27 1 0.6248 -2.5571 0.8897 28 1 3.1568 -3.4354 -0.0009 29 1 3.3600 -5.9713 0.8884 30 1 3.3599 -5.9706 -0.8916 31 1 2.0469 -12.7575 -1.6703 32 1 0.9270 -14.9464 -1.6561 33 1 -0.8251 -15.4272 0.0022 34 1 -1.4681 -13.7254 1.6577 35 1 -0.3607 -11.5300 1.6662 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773451146.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:21 Heat of formation + Delta-G solvation = -43.525267 kcal Electronic energy + Delta-G solvation = -19674.220935 eV Core-core repulsion = 16217.967440 eV Total energy + Delta-G solvation = -3456.253495 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.099 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.72500 -39.61208 -38.74430 -36.60022 -34.54644 -34.27216 -32.42817 -31.48413 -31.07886 -29.29525 -26.89812 -24.96484 -23.01380 -22.99066 -22.33201 -20.01584 -19.50656 -18.03007 -17.66211 -16.86250 -16.81722 -16.27800 -15.54800 -15.52599 -15.16292 -14.70909 -14.52200 -14.27600 -13.95684 -13.71895 -13.22347 -13.15578 -12.66421 -12.02847 -12.00830 -11.89008 -11.82220 -11.68181 -11.19703 -11.02183 -10.93534 -10.92166 -10.76463 -10.35443 -9.48500 -9.45243 -9.22568 -9.07615 -8.79475 -8.00915 -6.20431 -4.27990 0.21155 0.88992 1.10770 1.84985 2.50446 2.95075 3.14645 3.22820 3.28979 3.31320 3.49238 3.64312 4.16456 4.33817 4.44438 4.45050 4.60968 4.82966 4.90114 5.03864 5.09262 5.15279 5.18160 5.30059 5.42560 5.51099 5.85613 5.91901 5.97720 6.08996 6.39036 6.72335 7.20464 7.27574 7.44436 7.44599 7.60455 7.90785 8.47569 8.69414 8.94049 9.38418 10.89666 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.040925 B = 0.002072 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.011400 B =13507.203323 C =14012.083278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.251 3.749 10 N -0.705 5.705 11 C 0.500 3.500 12 O -0.533 6.533 13 C 0.047 3.953 14 O -0.310 6.310 15 C 0.590 3.410 16 O -0.485 6.485 17 C -0.177 4.177 18 C -0.007 4.007 19 C -0.009 4.009 20 C -0.083 4.083 21 C -0.122 4.122 22 C -0.101 4.101 23 C -0.121 4.121 24 C -0.081 4.081 25 H 0.267 0.733 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.394 0.606 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.851 -27.246 0.040 27.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.083 0.917 9 C 0.131 3.869 10 N -0.355 5.355 11 C 0.283 3.717 12 O -0.410 6.410 13 C -0.031 4.031 14 O -0.225 6.225 15 C 0.434 3.566 16 O -0.374 6.374 17 C -0.178 4.178 18 C -0.008 4.008 19 C -0.009 4.009 20 C -0.101 4.101 21 C -0.140 4.140 22 C -0.119 4.119 23 C -0.139 4.139 24 C -0.099 4.099 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.227 0.773 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.162 -27.172 0.045 27.258 hybrid contribution 1.058 1.148 -0.023 1.561 sum 3.219 -26.024 0.022 26.223 Atomic orbital electron populations 1.69973 1.06120 1.27426 1.48646 1.24957 0.94943 0.99510 0.94601 0.86381 0.79594 0.82484 0.78250 1.20426 1.20977 1.19717 1.21208 0.93354 0.90278 1.53558 0.91721 1.19190 0.88165 0.81497 0.98086 1.46353 1.11580 1.05243 1.72351 1.19827 0.89029 0.83947 0.78894 1.90722 1.16281 1.84490 1.49524 1.22633 0.94781 0.80683 1.04997 1.86264 1.39586 1.13535 1.83103 1.17014 0.84115 0.82142 0.73364 1.90960 1.13779 1.87632 1.45007 1.18690 1.00673 0.92651 1.05807 1.19188 0.95570 0.92953 0.93092 1.16064 0.97605 0.88359 0.98850 1.21336 0.99073 0.92505 0.97230 1.21124 0.96762 0.96725 0.99360 1.21423 0.96536 0.99455 0.94468 1.21146 1.00183 0.93148 0.99372 1.21363 0.93932 0.97416 0.97167 0.92360 0.95203 0.95202 0.77343 0.88201 0.88195 0.85051 0.85096 0.85393 0.84998 0.84832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.78 13.29 55.43 0.74 -25.05 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 7 C -0.55 -14.56 9.28 -34.44 -0.32 -14.88 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.53 5.43 -5.20 -0.03 6.51 16 10 N -0.71 -14.46 5.55 -61.48 -0.34 -14.80 16 11 C 0.50 10.01 7.91 -10.99 -0.09 9.92 16 12 O -0.53 -13.10 16.50 -14.35 -0.24 -13.34 16 13 C 0.05 0.71 5.85 36.01 0.21 0.92 16 14 O -0.31 -5.11 9.64 -47.82 -0.46 -5.57 16 15 C 0.59 8.82 7.78 32.66 0.25 9.08 16 16 O -0.48 -7.77 16.87 -19.36 -0.33 -8.10 16 17 C -0.18 -2.39 13.76 -38.83 -0.53 -2.92 16 18 C -0.01 -0.08 13.25 -38.84 -0.51 -0.60 16 19 C -0.01 -0.08 5.74 -106.76 -0.61 -0.69 16 20 C -0.08 -0.63 9.77 -39.10 -0.38 -1.01 16 21 C -0.12 -0.71 10.03 -39.65 -0.40 -1.11 16 22 C -0.10 -0.54 10.04 -39.46 -0.40 -0.94 16 23 C -0.12 -0.73 10.03 -39.65 -0.40 -1.13 16 24 C -0.08 -0.64 9.77 -39.11 -0.38 -1.02 16 25 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.39 6.72 8.32 -40.82 -0.34 6.38 16 29 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 30 H 0.10 1.28 8.13 -51.93 -0.42 0.85 16 31 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 33 H 0.13 0.39 8.06 -52.49 -0.42 -0.03 16 34 H 0.13 0.52 8.06 -52.48 -0.42 0.09 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 333.85 15.07 5.03 5.03 Total: -1.00 -33.88 333.85 -7.98 -41.86 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -3.68 Total: 0.59 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -3.68 Total: 3.77 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.40 Total: -39.85 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -1.02 Total: -27.01 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.88 -7.98 -41.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773451146.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.664 kcal (2) G-P(sol) polarization free energy of solvation -33.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds