Wall clock time and date at job start Wed Apr 15 2020 11:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99947 * 2 1 4 4 H 1.48501 * 109.47002 * 270.00583 * 3 2 1 5 5 H 1.48507 * 109.47036 * 30.00272 * 3 2 1 6 6 H 1.48494 * 109.47282 * 150.00216 * 3 2 1 7 7 C 1.37877 * 120.00419 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00417 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99980 * 359.97438 * 7 2 1 10 10 N 1.46489 * 109.47445 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00343 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99895 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00288 * 179.97438 * 11 10 9 14 14 O 1.42891 * 109.47307 * 179.97438 * 13 11 10 15 15 C 1.34908 * 117.00283 * 180.02562 * 14 13 11 16 16 O 1.21629 * 119.99688 * 0.02562 * 15 14 13 17 17 C 1.43204 * 120.00184 * 179.97438 * 15 14 13 18 18 C 9.53558 * 118.17044 * 179.97438 * 7 1 2 19 19 C 9.50225 * 151.41174 * 179.97438 * 9 1 2 20 20 C 1.39855 * 120.16637 * 129.07140 * 19 18 17 21 21 C 1.37890 * 119.82316 * 179.97438 * 20 19 18 22 22 C 1.38404 * 120.17220 * 359.97438 * 21 20 19 23 23 C 1.38409 * 120.34828 * 0.04376 * 22 21 20 24 24 C 1.37888 * 120.17293 * 359.95823 * 23 22 21 25 25 H 0.96997 * 119.99935 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.46773 * 59.99628 * 9 7 2 27 27 H 1.09006 * 109.47127 * 300.00666 * 9 7 2 28 28 H 0.96999 * 120.00182 * 359.97438 * 10 9 7 29 29 H 1.09006 * 109.46945 * 59.99992 * 13 11 10 30 30 H 1.09000 * 109.47229 * 299.99977 * 13 11 10 31 31 H 1.07999 * 120.09087 * 359.70346 * 20 19 18 32 32 H 1.07999 * 119.91206 * 179.97438 * 21 20 19 33 33 H 1.07997 * 119.82740 * 180.02562 * 22 21 20 34 34 H 1.08005 * 119.91233 * 179.97438 * 23 22 21 35 35 H 1.07996 * 120.08508 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7540 -4.8833 -0.0011 12 8 0.5616 -5.1050 -0.0011 13 6 2.7333 -6.0287 -0.0016 14 8 2.0189 -7.2662 -0.0015 15 6 2.7537 -8.3977 -0.0015 16 8 3.9683 -8.3339 -0.0010 17 6 2.1036 -9.6736 -0.0008 18 6 1.5706 -10.7197 -0.0010 19 6 0.9207 -11.9957 -0.0005 20 6 1.2806 -12.9681 -0.9390 21 6 0.6504 -14.1946 -0.9318 22 6 -0.3355 -14.4646 0.0013 23 6 -0.6975 -13.5073 0.9331 24 6 -0.0768 -12.2761 0.9388 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8902 27 1 0.6248 -2.5571 0.8897 28 1 3.1568 -3.4354 -0.0009 29 1 3.3600 -5.9713 0.8884 30 1 3.3599 -5.9706 -0.8916 31 1 2.0469 -12.7575 -1.6703 32 1 0.9270 -14.9464 -1.6561 33 1 -0.8251 -15.4272 0.0022 34 1 -1.4681 -13.7254 1.6577 35 1 -0.3607 -11.5300 1.6662 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773451146.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:20 Heat of formation + Delta-G solvation = -64.342243 kcal Electronic energy + Delta-G solvation = -19675.123627 eV Core-core repulsion = 16217.967440 eV Total energy + Delta-G solvation = -3457.156187 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.97024 -40.41725 -40.13948 -37.86801 -36.20880 -35.38343 -34.43124 -31.98314 -31.83465 -30.78664 -28.68473 -26.03820 -24.56612 -23.51368 -23.48114 -21.71013 -20.59898 -19.25318 -18.85594 -18.19563 -18.09723 -17.37953 -17.00983 -16.80917 -16.32289 -16.10168 -16.03254 -15.01666 -14.77254 -14.72174 -14.42318 -14.34398 -14.17125 -13.92650 -13.76498 -12.94681 -12.72140 -12.66957 -12.50598 -12.46700 -12.23220 -12.22762 -12.01648 -11.73137 -11.50409 -10.96161 -10.82300 -9.98825 -9.95195 -9.70564 -8.29843 -6.46551 -0.54067 0.13129 0.39297 0.82310 1.44422 1.46414 1.51324 1.54082 1.58160 2.02086 2.26373 2.44601 2.86848 3.05438 3.08052 3.61979 3.89267 3.96598 3.96753 4.01572 4.05229 4.23287 4.44302 4.53569 4.83053 4.93619 5.05084 5.08076 5.20951 5.35847 5.37010 5.40396 5.50374 5.61768 5.81338 5.81392 5.92135 6.27364 6.62171 6.75347 7.19452 7.34105 8.82264 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.040925 B = 0.002072 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.011400 B =13507.203323 C =14012.083278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.557 4.557 8 H 0.087 0.913 9 C 0.265 3.735 10 N -0.696 5.696 11 C 0.500 3.500 12 O -0.585 6.585 13 C 0.057 3.943 14 O -0.332 6.332 15 C 0.601 3.399 16 O -0.499 6.499 17 C -0.231 4.231 18 C 0.028 3.972 19 C -0.047 4.047 20 C -0.088 4.088 21 C -0.123 4.123 22 C -0.092 4.092 23 C -0.124 4.124 24 C -0.091 4.091 25 H 0.269 0.731 26 H -0.007 1.007 27 H -0.007 1.007 28 H 0.414 0.586 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.138 0.862 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.322 -28.963 -0.072 29.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.595 4.595 8 H 0.105 0.895 9 C 0.143 3.857 10 N -0.347 5.347 11 C 0.286 3.714 12 O -0.466 6.466 13 C -0.019 4.019 14 O -0.247 6.247 15 C 0.446 3.554 16 O -0.389 6.389 17 C -0.232 4.232 18 C 0.027 3.973 19 C -0.047 4.047 20 C -0.106 4.106 21 C -0.141 4.141 22 C -0.109 4.109 23 C -0.142 4.142 24 C -0.109 4.109 25 H 0.078 0.922 26 H 0.011 0.989 27 H 0.011 0.989 28 H 0.251 0.749 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.156 0.844 32 H 0.176 0.824 33 H 0.177 0.823 34 H 0.173 0.827 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.690 -28.916 -0.067 29.151 hybrid contribution 0.477 1.446 0.009 1.522 sum 4.167 -27.471 -0.058 27.785 Atomic orbital electron populations 1.70134 1.08258 1.28631 1.49835 1.26067 0.95789 1.03917 0.93842 0.85133 0.78470 0.76902 0.78561 1.19652 1.21052 1.17891 1.21619 0.94488 0.90336 1.53047 0.89464 1.18648 0.88599 0.83784 0.94650 1.46012 1.11827 1.04547 1.72356 1.20632 0.89173 0.84732 0.76861 1.90697 1.19004 1.85302 1.51575 1.22569 0.92923 0.78444 1.08005 1.86237 1.40658 1.14269 1.83517 1.16993 0.83855 0.81971 0.72583 1.90932 1.14171 1.87766 1.46008 1.18622 1.03037 0.93106 1.08410 1.19757 0.93888 0.92959 0.90680 1.16318 0.99290 0.88019 1.01036 1.21539 0.99390 0.92857 0.96841 1.21486 0.96308 0.96406 0.99852 1.21870 0.95579 1.00339 0.93140 1.21471 1.00311 0.92383 1.00013 1.21523 0.93858 0.98513 0.96979 0.92207 0.98935 0.98916 0.74929 0.85064 0.85053 0.84391 0.82423 0.82347 0.82715 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.69 13.29 21.45 0.28 -55.40 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.99 41.91 29.54 68.60 2.03 43.94 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 7 C -0.56 -29.80 9.28 25.60 0.24 -29.57 16 8 H 0.09 4.17 7.60 -2.91 -0.02 4.15 16 9 C 0.27 14.38 5.43 85.64 0.46 14.84 16 10 N -0.70 -28.74 5.55 -466.81 -2.59 -31.33 16 11 C 0.50 20.30 7.91 87.66 0.69 20.99 16 12 O -0.59 -30.06 16.50 16.01 0.26 -29.79 16 13 C 0.06 1.68 5.85 71.24 0.42 2.09 16 14 O -0.33 -11.01 9.64 -51.76 -0.50 -11.51 16 15 C 0.60 18.15 7.78 69.07 0.54 18.69 16 16 O -0.50 -15.77 16.87 19.42 0.33 -15.45 16 17 C -0.23 -6.41 13.76 30.02 0.41 -6.00 16 18 C 0.03 0.67 13.25 30.01 0.40 1.07 16 19 C -0.05 -0.85 5.74 -21.25 -0.12 -0.97 16 20 C -0.09 -1.22 9.77 22.58 0.22 -1.00 16 21 C -0.12 -1.08 10.03 22.23 0.22 -0.86 16 22 C -0.09 -0.69 10.04 22.35 0.22 -0.46 16 23 C -0.12 -1.22 10.03 22.23 0.22 -1.00 16 24 C -0.09 -1.37 9.77 22.58 0.22 -1.15 16 25 H 0.27 15.05 8.31 -92.71 -0.77 14.27 16 26 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 28 H 0.41 13.59 8.32 -92.71 -0.77 12.82 16 29 H 0.13 3.07 8.13 -2.38 -0.02 3.05 16 30 H 0.13 3.07 8.13 -2.39 -0.02 3.05 16 31 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 32 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 33 H 0.16 0.24 8.06 -2.91 -0.02 0.22 16 34 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 35 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -76.82 333.85 4.79 -72.03 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.36 Total: 10.17 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 4.61 Total: 17.35 kcal Atomic # 7 Polarization: -84.43 SS G_CDS: -2.30 Total: -86.74 kcal Atomic # 8 Polarization: -56.84 SS G_CDS: 0.09 Total: -56.75 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -76.82 4.79 -72.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773451146.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.686 kcal (2) G-P(sol) polarization free energy of solvation -76.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds