Wall clock time and date at job start Wed Apr 15 2020 11:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 120.00007 * 2 1 4 4 H 1.48498 * 109.47317 * 270.00344 * 3 2 1 5 5 H 1.48497 * 109.46918 * 30.00680 * 3 2 1 6 6 H 1.48501 * 109.46826 * 150.00583 * 3 2 1 7 7 C 1.38802 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99804 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00251 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00092 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47152 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 179.97438 * 11 10 9 13 13 O 1.45198 * 109.46884 * 180.02562 * 12 11 10 14 14 C 1.34231 * 116.99983 * 179.97438 * 13 12 11 15 15 O 1.20822 * 120.00142 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00053 * 180.02562 * 14 13 12 17 17 C 1.50704 * 112.85233 * 50.33479 * 16 14 13 18 18 N 1.34781 * 119.99731 * 309.66954 * 17 16 14 19 19 O 1.21277 * 120.00337 * 129.66753 * 17 16 14 20 20 C 1.53788 * 113.61602 * 279.13846 * 16 14 13 21 21 C 1.53956 * 87.02029 * 220.04841 * 20 16 14 22 22 C 1.53783 * 113.61425 * 181.53145 * 16 14 13 23 23 H 0.96996 * 119.99880 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46718 * 59.99828 * 10 9 7 25 25 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 26 26 H 1.09001 * 109.46652 * 60.00210 * 11 10 9 27 27 H 1.08992 * 109.47514 * 300.00299 * 11 10 9 28 28 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 29 29 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 30 30 H 0.97004 * 119.99827 * 359.97438 * 18 17 16 31 31 H 0.96994 * 119.99631 * 180.02562 * 18 17 16 32 32 H 1.09004 * 113.61204 * 334.56962 * 20 16 14 33 33 H 1.09000 * 113.61389 * 105.46727 * 20 16 14 34 34 H 1.08996 * 113.53721 * 270.81020 * 21 20 16 35 35 H 1.09000 * 113.73905 * 139.93847 * 21 20 16 36 36 H 1.08999 * 113.61641 * 254.52665 * 22 16 14 37 37 H 1.08994 * 113.61435 * 25.34897 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6525 0.7002 6 1 3.5479 1.4400 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9792 -5.3243 0.0001 12 6 3.1513 -6.3078 -0.0005 13 8 2.6421 -7.6675 -0.0005 14 6 3.5485 -8.6577 -0.0016 15 8 4.7282 -8.3968 -0.0020 16 6 3.0946 -10.0947 -0.0023 17 6 2.0725 -10.3851 -1.0710 18 7 0.9868 -9.5965 -1.1972 19 8 2.2268 -11.3284 -1.8174 20 6 2.6963 -10.6156 1.3888 21 6 3.3948 -11.9333 1.0069 22 6 4.2522 -11.1063 0.0342 23 1 -0.4850 0.8400 0.0004 24 1 3.1244 -3.7314 0.8895 25 1 3.1245 -3.7314 -0.8905 26 1 1.3704 -5.4846 -0.8897 27 1 1.3709 -5.4841 0.8902 28 1 3.7594 -6.1478 -0.8909 29 1 3.7605 -6.1476 0.8891 30 1 0.8632 -8.8422 -0.5999 31 1 0.3288 -9.7836 -1.8848 32 1 3.1814 -10.0859 2.2087 33 1 1.6196 -10.7149 1.5261 34 1 2.7370 -12.6468 0.5107 35 1 3.9658 -12.3793 1.8212 36 1 4.4297 -11.6014 -0.9205 37 1 5.1639 -10.7107 0.4817 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805539279.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:23 Heat of formation + Delta-G solvation = -123.620886 kcal Electronic energy + Delta-G solvation = -20105.156526 eV Core-core repulsion = 16780.873775 eV Total energy + Delta-G solvation = -3324.282751 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.66861 -39.79123 -37.77229 -36.59737 -34.06243 -33.52759 -32.49346 -28.53761 -26.45524 -26.14307 -25.46223 -22.74265 -21.92274 -21.45331 -19.44676 -18.47337 -17.53701 -17.48612 -17.08039 -16.74918 -16.23421 -15.36177 -15.02080 -14.86341 -14.71680 -14.42255 -14.04006 -13.43980 -13.06429 -12.89863 -12.81459 -12.52085 -12.17119 -11.88199 -11.46837 -11.40696 -11.24657 -11.07288 -10.98081 -10.93262 -10.75210 -10.60561 -10.42819 -10.23004 -9.97736 -9.69077 -9.12476 -8.42885 -6.62652 -6.29950 -4.01430 1.70792 2.06897 2.50858 3.09575 3.17694 3.18367 3.25425 3.46896 3.73274 3.96586 4.15079 4.27987 4.45103 4.51647 4.94263 4.98990 5.06202 5.06938 5.19940 5.27799 5.29949 5.37380 5.43542 5.51288 5.66780 5.67226 5.78167 5.91555 6.03099 6.26027 6.34527 6.45354 6.56270 7.01601 7.43363 7.54294 7.89079 8.29814 9.16740 10.78221 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.039343 B = 0.002715 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.515522 B =10310.477291 C =10647.271209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.074 0.926 9 S -0.123 6.123 10 C -0.116 4.116 11 C -0.098 4.098 12 C 0.072 3.928 13 O -0.358 6.358 14 C 0.478 3.522 15 O -0.492 6.492 16 C -0.114 4.114 17 C 0.549 3.451 18 N -0.840 5.840 19 O -0.531 6.531 20 C -0.108 4.108 21 C -0.139 4.139 22 C -0.101 4.101 23 H 0.268 0.732 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.412 0.588 31 H 0.407 0.593 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.598 -21.171 2.402 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.667 4.667 8 H 0.092 0.908 9 S 0.105 5.895 10 C -0.264 4.264 11 C -0.136 4.136 12 C -0.002 4.002 13 O -0.275 6.275 14 C 0.319 3.681 15 O -0.378 6.378 16 C -0.118 4.118 17 C 0.331 3.669 18 N -0.405 5.405 19 O -0.407 6.407 20 C -0.146 4.146 21 C -0.176 4.176 22 C -0.138 4.138 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.244 0.756 31 H 0.238 0.762 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.921 -21.736 2.017 22.024 hybrid contribution 1.617 1.943 -0.052 2.529 sum 4.538 -19.792 1.965 20.401 Atomic orbital electron populations 1.70011 1.05934 1.27479 1.47058 1.25019 0.95102 0.99150 0.94459 0.86144 0.79448 0.81399 0.78430 1.20218 1.20703 1.19639 1.22690 0.94587 0.90634 1.58808 0.90828 1.84626 1.08660 0.99277 1.96898 1.23185 1.03556 0.96280 1.03410 1.21303 0.96354 0.91643 1.04316 1.23362 0.97973 0.76025 1.02881 1.86344 1.40455 1.17249 1.83424 1.22898 0.84887 0.87422 0.72898 1.90683 1.18307 1.84395 1.44455 1.22237 1.00362 0.89807 0.99441 1.19296 0.81860 0.82264 0.83443 1.43867 1.24505 1.33080 1.39027 1.90757 1.76513 1.29586 1.43869 1.22954 1.02596 0.96925 0.92132 1.22912 0.99067 0.96107 0.99517 1.22868 0.95344 0.93491 1.02138 0.92204 0.91687 0.91713 0.90312 0.90203 0.90983 0.90861 0.75611 0.76203 0.88129 0.89514 0.89087 0.89940 0.88929 0.87751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.38 13.22 55.49 0.73 -24.65 16 2 C 0.07 2.00 5.49 -17.43 -0.10 1.90 16 3 Si 0.92 21.12 29.55 -169.99 -5.02 16.10 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.52 -14.48 9.50 30.94 0.29 -14.19 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.12 -3.06 21.44 -107.50 -2.30 -5.37 16 10 C -0.12 -2.18 5.67 37.16 0.21 -1.97 16 11 C -0.10 -1.42 5.60 -26.73 -0.15 -1.57 16 12 C 0.07 0.93 5.47 37.16 0.20 1.13 16 13 O -0.36 -4.14 8.15 -39.26 -0.32 -4.46 16 14 C 0.48 5.75 7.00 36.00 0.25 6.00 16 15 O -0.49 -7.21 15.66 -18.75 -0.29 -7.50 16 16 C -0.11 -1.12 1.20 -155.99 -0.19 -1.31 16 17 C 0.55 5.88 6.90 -10.98 -0.08 5.80 16 18 N -0.84 -6.86 8.65 31.22 0.27 -6.59 16 19 O -0.53 -7.25 16.67 5.56 0.09 -7.16 16 20 C -0.11 -0.77 7.22 -25.82 -0.19 -0.96 16 21 C -0.14 -0.97 7.76 -25.82 -0.20 -1.17 16 22 C -0.10 -0.92 6.78 -25.91 -0.18 -1.10 16 23 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 25 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 29 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 30 H 0.41 3.05 6.94 -40.82 -0.28 2.77 16 31 H 0.41 2.74 8.93 -40.82 -0.36 2.37 16 32 H 0.10 0.65 8.09 -51.93 -0.42 0.23 16 33 H 0.09 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.93 7.41 -51.93 -0.38 0.55 16 37 H 0.10 0.95 7.45 -51.93 -0.39 0.56 16 LS Contribution 331.40 15.07 4.99 4.99 Total: -1.00 -32.97 331.40 -7.15 -40.12 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -5.19 Total: 1.93 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -0.11 Total: -7.41 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 1.00 Total: -31.24 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.52 Total: -19.12 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -3.06 SS G_CDS: -2.30 Total: -5.37 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.97 -7.15 -40.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805539279.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.502 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds