Wall clock time and date at job start Wed Apr 15 2020 11:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 120.00007 * 2 1 4 4 H 1.48498 * 109.47317 * 270.00344 * 3 2 1 5 5 H 1.48497 * 109.46918 * 30.00680 * 3 2 1 6 6 H 1.48501 * 109.46826 * 150.00583 * 3 2 1 7 7 C 1.38802 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99804 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00251 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00092 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47152 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 179.97438 * 11 10 9 13 13 O 1.45198 * 109.46884 * 180.02562 * 12 11 10 14 14 C 1.34231 * 116.99983 * 179.97438 * 13 12 11 15 15 O 1.20822 * 120.00142 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00053 * 180.02562 * 14 13 12 17 17 C 1.50704 * 112.85233 * 50.33479 * 16 14 13 18 18 N 1.34781 * 119.99731 * 309.66954 * 17 16 14 19 19 O 1.21277 * 120.00337 * 129.66753 * 17 16 14 20 20 C 1.53788 * 113.61602 * 279.13846 * 16 14 13 21 21 C 1.53956 * 87.02029 * 220.04841 * 20 16 14 22 22 C 1.53783 * 113.61425 * 181.53145 * 16 14 13 23 23 H 0.96996 * 119.99880 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46718 * 59.99828 * 10 9 7 25 25 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 26 26 H 1.09001 * 109.46652 * 60.00210 * 11 10 9 27 27 H 1.08992 * 109.47514 * 300.00299 * 11 10 9 28 28 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 29 29 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 30 30 H 0.97004 * 119.99827 * 359.97438 * 18 17 16 31 31 H 0.96994 * 119.99631 * 180.02562 * 18 17 16 32 32 H 1.09004 * 113.61204 * 334.56962 * 20 16 14 33 33 H 1.09000 * 113.61389 * 105.46727 * 20 16 14 34 34 H 1.08996 * 113.53721 * 270.81020 * 21 20 16 35 35 H 1.09000 * 113.73905 * 139.93847 * 21 20 16 36 36 H 1.08999 * 113.61641 * 254.52665 * 22 16 14 37 37 H 1.08994 * 113.61435 * 25.34897 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6525 0.7002 6 1 3.5479 1.4400 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9792 -5.3243 0.0001 12 6 3.1513 -6.3078 -0.0005 13 8 2.6421 -7.6675 -0.0005 14 6 3.5485 -8.6577 -0.0016 15 8 4.7282 -8.3968 -0.0020 16 6 3.0946 -10.0947 -0.0023 17 6 2.0725 -10.3851 -1.0710 18 7 0.9868 -9.5965 -1.1972 19 8 2.2268 -11.3284 -1.8174 20 6 2.6963 -10.6156 1.3888 21 6 3.3948 -11.9333 1.0069 22 6 4.2522 -11.1063 0.0342 23 1 -0.4850 0.8400 0.0004 24 1 3.1244 -3.7314 0.8895 25 1 3.1245 -3.7314 -0.8905 26 1 1.3704 -5.4846 -0.8897 27 1 1.3709 -5.4841 0.8902 28 1 3.7594 -6.1478 -0.8909 29 1 3.7605 -6.1476 0.8891 30 1 0.8632 -8.8422 -0.5999 31 1 0.3288 -9.7836 -1.8848 32 1 3.1814 -10.0859 2.2087 33 1 1.6196 -10.7149 1.5261 34 1 2.7370 -12.6468 0.5107 35 1 3.9658 -12.3793 1.8212 36 1 4.4297 -11.6014 -0.9205 37 1 5.1639 -10.7107 0.4817 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805539279.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:22 Heat of formation + Delta-G solvation = -145.545642 kcal Electronic energy + Delta-G solvation = -20106.107254 eV Core-core repulsion = 16780.873775 eV Total energy + Delta-G solvation = -3325.233479 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.52642 -40.71943 -38.61177 -37.56355 -35.05641 -34.65996 -34.54687 -29.42219 -27.97782 -27.20506 -26.78602 -23.65157 -22.84789 -22.56568 -20.22993 -19.64463 -19.22977 -18.36365 -18.01897 -17.71846 -17.06574 -16.89847 -16.28957 -16.08621 -15.93881 -15.56100 -15.15205 -14.73908 -14.25808 -14.07970 -13.85952 -13.51516 -13.31102 -13.09765 -12.95759 -12.70246 -12.63667 -12.42528 -12.40255 -12.05361 -11.66541 -11.58814 -11.54049 -11.35059 -11.15168 -11.09386 -10.75833 -10.35661 -8.66921 -8.38677 -6.14207 0.78847 1.11052 1.32343 1.39185 1.47400 1.55941 1.83873 2.26884 2.34252 2.96220 2.96633 3.28057 3.29905 3.56138 3.70086 3.80849 3.85742 3.97531 4.14644 4.30107 4.32719 4.53772 4.64883 4.65661 4.69705 4.85555 4.93041 5.02184 5.03428 5.08314 5.30719 5.32909 5.40013 5.76208 6.17426 6.27606 6.45952 7.04505 7.14597 8.70487 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.039343 B = 0.002715 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.515522 B =10310.477291 C =10647.271209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.017 3.983 3 Si 0.991 3.009 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.073 0.927 9 S -0.180 6.180 10 C -0.095 4.095 11 C -0.085 4.085 12 C 0.080 3.920 13 O -0.348 6.348 14 C 0.481 3.519 15 O -0.520 6.520 16 C -0.118 4.118 17 C 0.547 3.453 18 N -0.826 5.826 19 O -0.565 6.565 20 C -0.100 4.100 21 C -0.128 4.128 22 C -0.107 4.107 23 H 0.272 0.728 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.418 0.582 31 H 0.414 0.586 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.107 -21.546 3.178 22.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.188 4.188 3 Si 0.814 3.186 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.689 4.689 8 H 0.091 0.909 9 S 0.049 5.951 10 C -0.244 4.244 11 C -0.124 4.124 12 C 0.005 3.995 13 O -0.265 6.265 14 C 0.323 3.677 15 O -0.408 6.408 16 C -0.123 4.123 17 C 0.330 3.670 18 N -0.391 5.391 19 O -0.444 6.444 20 C -0.137 4.137 21 C -0.166 4.166 22 C -0.144 4.144 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.251 0.749 31 H 0.247 0.753 32 H 0.129 0.871 33 H 0.120 0.880 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.096 0.904 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.400 -22.105 2.798 22.539 hybrid contribution 1.464 1.980 -0.312 2.482 sum 4.864 -20.125 2.486 20.853 Atomic orbital electron populations 1.70133 1.07579 1.28600 1.47917 1.26020 0.96013 1.02996 0.93773 0.85050 0.78229 0.76590 0.78778 1.19419 1.19926 1.18787 1.23060 0.94828 0.92113 1.58902 0.90893 1.84559 1.12888 1.00610 1.97046 1.23090 1.00867 0.96842 1.03567 1.21119 0.96897 0.89389 1.04945 1.23114 0.96903 0.76406 1.03110 1.86337 1.40154 1.16683 1.83308 1.23336 0.84491 0.88010 0.71816 1.90677 1.19441 1.84793 1.45863 1.22393 1.00698 0.88176 1.01018 1.19443 0.82318 0.82018 0.83203 1.43799 1.23882 1.32493 1.38925 1.90746 1.77393 1.31170 1.45105 1.23044 1.03772 0.96401 0.90488 1.22868 0.98516 0.95864 0.99310 1.22915 0.95540 0.93832 1.02164 0.91909 0.91349 0.91644 0.89900 0.89461 0.91187 0.90363 0.74941 0.75310 0.87052 0.87963 0.89524 0.87838 0.90400 0.87796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.29 13.22 21.65 0.29 -53.00 16 2 C 0.02 0.96 5.49 84.86 0.47 1.42 16 3 Si 0.99 42.99 29.55 68.60 2.03 45.01 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.54 -30.30 9.50 67.95 0.65 -29.65 16 8 H 0.07 3.94 7.80 -2.91 -0.02 3.92 16 9 S -0.18 -9.03 21.44 -56.49 -1.21 -10.24 16 10 C -0.09 -3.48 5.67 71.98 0.41 -3.07 16 11 C -0.09 -2.33 5.60 30.59 0.17 -2.16 16 12 C 0.08 1.90 5.47 71.98 0.39 2.30 16 13 O -0.35 -7.36 8.15 -51.42 -0.42 -7.78 16 14 C 0.48 10.86 7.00 71.24 0.50 11.36 16 15 O -0.52 -14.68 15.66 21.98 0.34 -14.34 16 16 C -0.12 -2.16 1.20 -53.14 -0.06 -2.22 16 17 C 0.55 11.11 6.90 87.66 0.60 11.72 16 18 N -0.83 -12.21 8.65 -173.53 -1.50 -13.71 16 19 O -0.57 -15.21 16.67 -3.02 -0.05 -15.26 16 20 C -0.10 -1.17 7.22 31.18 0.23 -0.94 16 21 C -0.13 -1.54 7.76 31.18 0.24 -1.30 16 22 C -0.11 -1.86 6.78 31.12 0.21 -1.65 16 23 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 24 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.07 1.73 8.13 -2.39 -0.02 1.71 16 29 H 0.08 1.83 8.13 -2.39 -0.02 1.81 16 30 H 0.42 5.34 6.94 -92.71 -0.64 4.70 16 31 H 0.41 4.99 8.93 -92.71 -0.83 4.17 16 32 H 0.11 1.12 8.09 -2.39 -0.02 1.10 16 33 H 0.10 0.91 8.09 -2.39 -0.02 0.89 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 1.58 7.41 -2.39 -0.02 1.57 16 37 H 0.10 1.81 7.45 -2.39 -0.02 1.79 16 Total: -1.00 -71.02 331.40 2.90 -68.11 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -0.37 Total: 15.40 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: 3.80 Total: -14.20 kcal Atomic # 7 Polarization: -65.49 SS G_CDS: -1.22 Total: -66.71 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -0.13 Total: -37.38 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.21 Total: -10.24 kcal Total: -71.02 2.90 -68.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805539279.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.433 kcal (2) G-P(sol) polarization free energy of solvation -71.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds