Wall clock time and date at job start Wed Apr 15 2020 11:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99643 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00477 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00494 * 3 2 1 6 6 H 1.48499 * 109.47352 * 330.00324 * 3 2 1 7 7 C 1.38798 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99506 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99738 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47049 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46888 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.46674 * 180.02562 * 12 11 10 14 14 C 1.34235 * 116.99813 * 180.02562 * 13 12 11 15 15 O 1.20829 * 119.99934 * 359.97438 * 14 13 12 16 16 C 1.50693 * 119.99943 * 180.02562 * 14 13 12 17 17 H 1.08999 * 109.29835 * 320.41540 * 16 14 13 18 18 C 1.52917 * 109.30240 * 79.99683 * 16 14 13 19 19 C 1.53349 * 108.67810 * 171.06120 * 18 16 14 20 20 C 1.53066 * 108.42874 * 292.47319 * 19 18 16 21 21 C 1.50184 * 109.88761 * 48.89651 * 20 19 18 22 22 O 1.21282 * 118.24053 * 162.40242 * 21 20 19 23 23 N 1.33352 * 123.50969 * 342.41536 * 21 20 19 24 24 H 0.97005 * 119.99723 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47255 * 299.99975 * 10 9 7 26 26 H 1.09001 * 109.46783 * 60.00283 * 10 9 7 27 27 H 1.09000 * 109.47368 * 300.00269 * 11 10 9 28 28 H 1.09001 * 109.46801 * 60.00657 * 11 10 9 29 29 H 1.09000 * 109.47408 * 300.00333 * 12 11 10 30 30 H 1.09001 * 109.46790 * 60.00740 * 12 11 10 31 31 H 1.08998 * 109.60585 * 290.81962 * 18 16 14 32 32 H 1.09005 * 109.60346 * 51.30898 * 18 16 14 33 33 H 1.09007 * 109.66570 * 52.20321 * 19 18 16 34 34 H 1.08998 * 109.67436 * 172.73405 * 19 18 16 35 35 H 1.08996 * 109.40256 * 169.02201 * 20 19 18 36 36 H 1.08997 * 109.40060 * 288.76889 * 20 19 18 37 37 H 0.97000 * 117.94407 * 182.22251 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5477 1.4403 -0.7001 6 1 1.4477 2.6528 -0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0021 11 6 1.9795 -5.3242 -0.0017 12 6 3.1516 -6.3076 -0.0037 13 8 2.6424 -7.6674 -0.0039 14 6 3.5489 -8.6575 -0.0051 15 8 4.7286 -8.3966 -0.0063 16 6 3.0950 -10.0945 -0.0059 17 1 2.2308 -10.1997 0.6499 18 6 2.7031 -10.4999 -1.4273 19 6 2.4601 -12.0138 -1.4569 20 6 3.7964 -12.7230 -1.2240 21 6 4.4891 -12.1288 -0.0313 22 8 5.3823 -12.7634 0.4887 23 7 4.1745 -10.9409 0.4867 24 1 -0.4850 -0.8401 0.0004 25 1 3.1239 -3.7308 -0.8925 26 1 3.1252 -3.7316 0.8875 27 1 1.3718 -5.4844 0.8889 28 1 1.3700 -5.4842 -0.8911 29 1 3.7590 -6.1473 -0.8945 30 1 3.7615 -6.1478 0.8855 31 1 1.7919 -9.9776 -1.7186 32 1 3.5092 -10.2456 -2.1156 33 1 1.7571 -12.2879 -0.6701 34 1 2.0560 -12.3017 -2.4274 35 1 3.6175 -13.7836 -1.0476 36 1 4.4272 -12.6051 -2.1050 37 1 4.6968 -10.6201 1.2385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805553949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:25 Heat of formation + Delta-G solvation = -150.983553 kcal Electronic energy + Delta-G solvation = -19639.382445 eV Core-core repulsion = 16313.913160 eV Total energy + Delta-G solvation = -3325.469285 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.38721 -40.11219 -37.35515 -36.57599 -33.75727 -33.57057 -32.59320 -30.68611 -27.16633 -25.69868 -24.83142 -23.39502 -21.73504 -21.46018 -19.71530 -18.32127 -18.01334 -17.97597 -17.12171 -16.67082 -16.24971 -15.50671 -14.99217 -14.74416 -14.63495 -14.28501 -14.15086 -13.90960 -13.65038 -13.03003 -12.98122 -12.60512 -12.44202 -12.14819 -11.68344 -11.60415 -11.54970 -11.35668 -11.31335 -10.94814 -10.90386 -10.50845 -10.23956 -10.23016 -9.68748 -9.50237 -9.07242 -8.41418 -6.80009 -6.69507 -4.09006 1.72023 1.93872 2.31827 2.82921 3.18719 3.33455 3.35892 3.52221 3.95682 3.99618 4.10004 4.18519 4.19186 4.43525 4.60783 4.81458 4.90933 4.96303 5.08846 5.14706 5.15629 5.16712 5.27095 5.28473 5.30065 5.53419 5.56883 5.64840 5.92974 6.16611 6.23660 6.23879 6.45996 6.77267 7.34822 7.73181 7.88417 8.43247 9.19508 10.74748 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.051175 B = 0.002318 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.005739 B =12078.136567 C =12412.802129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.034 3.966 3 Si 1.087 2.913 4 H -0.283 1.283 5 H -0.286 1.286 6 H -0.279 1.279 7 C -0.591 4.591 8 H 0.067 0.933 9 S -0.179 6.179 10 C -0.092 4.092 11 C -0.099 4.099 12 C 0.073 3.927 13 O -0.349 6.349 14 C 0.448 3.552 15 O -0.496 6.496 16 C 0.154 3.846 17 H 0.116 0.884 18 C -0.130 4.130 19 C -0.121 4.121 20 C -0.138 4.138 21 C 0.527 3.473 22 O -0.550 6.550 23 N -0.705 5.705 24 H 0.277 0.723 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.088 -23.596 -2.953 23.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.177 4.177 3 Si 0.913 3.087 4 H -0.210 1.210 5 H -0.212 1.212 6 H -0.205 1.205 7 C -0.739 4.739 8 H 0.085 0.915 9 S 0.048 5.952 10 C -0.241 4.241 11 C -0.138 4.138 12 C -0.002 4.002 13 O -0.265 6.265 14 C 0.289 3.711 15 O -0.383 6.383 16 C 0.047 3.953 17 H 0.134 0.866 18 C -0.168 4.168 19 C -0.159 4.159 20 C -0.178 4.178 21 C 0.314 3.686 22 O -0.427 6.427 23 N -0.359 5.359 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 2.442 -22.431 -2.882 22.747 hybrid contribution 2.024 -0.887 0.324 2.233 sum 4.466 -23.317 -2.558 23.879 Atomic orbital electron populations 1.70789 1.06671 1.30902 1.43600 1.26104 0.96369 1.02234 0.92945 0.83280 0.74464 0.73848 0.77121 1.20991 1.21247 1.20454 1.23561 0.95723 0.91117 1.63453 0.91471 1.84167 1.11766 1.01855 1.97376 1.22982 1.02058 0.95380 1.03707 1.21323 0.96498 0.91484 1.04470 1.23317 0.97786 0.76207 1.02902 1.86463 1.39952 1.16954 1.83118 1.23783 0.85068 0.88922 0.73353 1.90728 1.18513 1.84767 1.44266 1.20485 0.91152 0.83970 0.99677 0.86633 1.21921 1.04235 0.97749 0.92884 1.21676 0.96768 0.93300 1.04115 1.21722 0.97349 1.01898 0.96835 1.20205 0.83014 0.80355 0.85012 1.90792 1.31742 1.59196 1.61011 1.45343 1.35576 1.18857 1.36167 0.91072 0.91424 0.91435 0.90202 0.90199 0.90886 0.90889 0.87866 0.89998 0.90326 0.89368 0.87631 0.87814 0.75751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.67 55.49 0.76 -26.06 16 2 C 0.03 0.96 5.49 -17.43 -0.10 0.87 16 3 Si 1.09 24.72 29.92 -169.99 -5.09 19.63 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.59 -16.77 9.50 30.94 0.29 -16.48 16 8 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 9 S -0.18 -4.49 20.46 -107.50 -2.20 -6.69 16 10 C -0.09 -1.76 5.67 37.16 0.21 -1.55 16 11 C -0.10 -1.47 5.60 -26.73 -0.15 -1.62 16 12 C 0.07 0.93 5.47 37.16 0.20 1.14 16 13 O -0.35 -3.97 10.22 -39.27 -0.40 -4.37 16 14 C 0.45 4.75 7.10 36.00 0.26 5.00 16 15 O -0.50 -6.88 16.15 -18.75 -0.30 -7.18 16 16 C 0.15 1.08 3.57 -69.53 -0.25 0.83 16 17 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 18 C -0.13 -0.65 5.29 -26.59 -0.14 -0.79 16 19 C -0.12 -0.42 6.03 -26.52 -0.16 -0.58 16 20 C -0.14 -0.76 6.03 -28.10 -0.17 -0.93 16 21 C 0.53 5.02 7.71 -11.87 -0.09 4.93 16 22 O -0.55 -7.66 17.78 5.56 0.10 -7.56 16 23 N -0.71 -6.09 4.79 -55.99 -0.27 -6.36 16 24 H 0.28 8.45 7.12 -40.82 -0.29 8.16 16 25 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 26 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 30 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 31 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 33 H 0.08 0.23 8.13 -51.93 -0.42 -0.20 16 34 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 35 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.41 3.82 8.46 -40.82 -0.35 3.47 16 LS Contribution 330.94 15.07 4.99 4.99 Total: -1.00 -35.18 330.94 -7.84 -43.02 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -5.33 Total: -0.24 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -0.09 Total: -9.17 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 0.49 Total: -32.42 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.61 Total: -19.12 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.09 Total: 19.63 kcal Atomic # 16 Polarization: -4.49 SS G_CDS: -2.20 Total: -6.69 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.18 -7.84 -43.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805553949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.963 kcal (2) G-P(sol) polarization free energy of solvation -35.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds