Wall clock time and date at job start Wed Apr 15 2020 11:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99643 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00477 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00494 * 3 2 1 6 6 H 1.48499 * 109.47352 * 330.00324 * 3 2 1 7 7 C 1.38798 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99506 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99738 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47049 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46888 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.46674 * 180.02562 * 12 11 10 14 14 C 1.34235 * 116.99813 * 180.02562 * 13 12 11 15 15 O 1.20829 * 119.99934 * 359.97438 * 14 13 12 16 16 C 1.50693 * 119.99943 * 180.02562 * 14 13 12 17 17 H 1.08999 * 109.29835 * 320.41540 * 16 14 13 18 18 C 1.52917 * 109.30240 * 79.99683 * 16 14 13 19 19 C 1.53349 * 108.67810 * 171.06120 * 18 16 14 20 20 C 1.53066 * 108.42874 * 292.47319 * 19 18 16 21 21 C 1.50184 * 109.88761 * 48.89651 * 20 19 18 22 22 O 1.21282 * 118.24053 * 162.40242 * 21 20 19 23 23 N 1.33352 * 123.50969 * 342.41536 * 21 20 19 24 24 H 0.97005 * 119.99723 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47255 * 299.99975 * 10 9 7 26 26 H 1.09001 * 109.46783 * 60.00283 * 10 9 7 27 27 H 1.09000 * 109.47368 * 300.00269 * 11 10 9 28 28 H 1.09001 * 109.46801 * 60.00657 * 11 10 9 29 29 H 1.09000 * 109.47408 * 300.00333 * 12 11 10 30 30 H 1.09001 * 109.46790 * 60.00740 * 12 11 10 31 31 H 1.08998 * 109.60585 * 290.81962 * 18 16 14 32 32 H 1.09005 * 109.60346 * 51.30898 * 18 16 14 33 33 H 1.09007 * 109.66570 * 52.20321 * 19 18 16 34 34 H 1.08998 * 109.67436 * 172.73405 * 19 18 16 35 35 H 1.08996 * 109.40256 * 169.02201 * 20 19 18 36 36 H 1.08997 * 109.40060 * 288.76889 * 20 19 18 37 37 H 0.97000 * 117.94407 * 182.22251 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5477 1.4403 -0.7001 6 1 1.4477 2.6528 -0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0021 11 6 1.9795 -5.3242 -0.0017 12 6 3.1516 -6.3076 -0.0037 13 8 2.6424 -7.6674 -0.0039 14 6 3.5489 -8.6575 -0.0051 15 8 4.7286 -8.3966 -0.0063 16 6 3.0950 -10.0945 -0.0059 17 1 2.2308 -10.1997 0.6499 18 6 2.7031 -10.4999 -1.4273 19 6 2.4601 -12.0138 -1.4569 20 6 3.7964 -12.7230 -1.2240 21 6 4.4891 -12.1288 -0.0313 22 8 5.3823 -12.7634 0.4887 23 7 4.1745 -10.9409 0.4867 24 1 -0.4850 -0.8401 0.0004 25 1 3.1239 -3.7308 -0.8925 26 1 3.1252 -3.7316 0.8875 27 1 1.3718 -5.4844 0.8889 28 1 1.3700 -5.4842 -0.8911 29 1 3.7590 -6.1473 -0.8945 30 1 3.7615 -6.1478 0.8855 31 1 1.7919 -9.9776 -1.7186 32 1 3.5092 -10.2456 -2.1156 33 1 1.7571 -12.2879 -0.6701 34 1 2.0560 -12.3017 -2.4274 35 1 3.6175 -13.7836 -1.0476 36 1 4.4272 -12.6051 -2.1050 37 1 4.6968 -10.6201 1.2385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805553949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:24 Heat of formation + Delta-G solvation = -174.575673 kcal Electronic energy + Delta-G solvation = -19640.405476 eV Core-core repulsion = 16313.913160 eV Total energy + Delta-G solvation = -3326.492316 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.17645 -40.92930 -38.24876 -37.36842 -35.07354 -34.72630 -34.07641 -31.34113 -28.32510 -27.12931 -26.22735 -23.89427 -22.92743 -22.43237 -20.30856 -20.21794 -18.98010 -18.74423 -17.99757 -17.56320 -17.05669 -16.58788 -16.17185 -16.04243 -15.75718 -15.24820 -15.06751 -14.78869 -14.71373 -14.63577 -14.17569 -14.11071 -13.23339 -13.09586 -12.83549 -12.77926 -12.62061 -12.48967 -12.08371 -11.97607 -11.91551 -11.78709 -11.61661 -11.36431 -11.12081 -10.95788 -10.44558 -10.40603 -8.95066 -8.88509 -6.29904 0.87903 1.05341 1.41486 1.52144 1.57996 1.66893 1.78083 2.17742 2.30197 2.98807 3.07733 3.31251 3.49042 3.51374 3.75215 3.81665 3.87153 3.96819 4.03604 4.18214 4.20868 4.41534 4.49192 4.55529 4.71372 4.81019 4.91408 4.95253 4.99715 5.06623 5.25312 5.28367 5.51716 5.62221 6.10710 6.15808 6.46673 7.00901 7.02141 8.49753 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.051175 B = 0.002318 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.005739 B =12078.136567 C =12412.802129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.017 4.017 3 Si 1.135 2.865 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.275 1.275 7 C -0.608 4.608 8 H 0.065 0.935 9 S -0.227 6.227 10 C -0.073 4.073 11 C -0.086 4.086 12 C 0.080 3.920 13 O -0.344 6.344 14 C 0.451 3.549 15 O -0.533 6.533 16 C 0.158 3.842 17 H 0.147 0.853 18 C -0.130 4.130 19 C -0.111 4.111 20 C -0.135 4.135 21 C 0.521 3.479 22 O -0.603 6.603 23 N -0.706 5.706 24 H 0.264 0.736 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.850 -24.500 -3.633 24.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.221 4.221 3 Si 0.953 3.047 4 H -0.193 1.193 5 H -0.193 1.193 6 H -0.201 1.201 7 C -0.756 4.756 8 H 0.083 0.917 9 S 0.001 5.999 10 C -0.222 4.222 11 C -0.125 4.125 12 C 0.005 3.995 13 O -0.260 6.260 14 C 0.294 3.706 15 O -0.421 6.421 16 C 0.052 3.948 17 H 0.164 0.836 18 C -0.167 4.167 19 C -0.148 4.148 20 C -0.174 4.174 21 C 0.311 3.689 22 O -0.485 6.485 23 N -0.358 5.358 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.140 0.860 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.168 -23.351 -3.573 23.722 hybrid contribution 2.127 -0.696 0.546 2.304 sum 4.295 -24.047 -3.026 24.615 Atomic orbital electron populations 1.70897 1.07714 1.30271 1.45708 1.27723 0.96437 1.06143 0.91754 0.82713 0.73934 0.69862 0.78175 1.19336 1.19342 1.20058 1.23932 0.95953 0.92776 1.62896 0.91661 1.84153 1.15563 1.02722 1.97481 1.22944 0.99440 0.96018 1.03846 1.21127 0.97124 0.89311 1.04889 1.23027 0.96532 0.76858 1.03087 1.86453 1.39970 1.16372 1.83172 1.24546 0.84424 0.89869 0.71796 1.90723 1.20065 1.85297 1.46062 1.20822 0.91013 0.81017 1.01940 0.83560 1.22025 1.04665 0.99174 0.90876 1.21687 0.95607 0.91557 1.05967 1.21795 0.98278 1.02451 0.94872 1.21009 0.82380 0.80068 0.85465 1.90763 1.34227 1.60682 1.62835 1.45476 1.35747 1.18850 1.35684 0.92445 0.91184 0.91303 0.89928 0.89692 0.90691 0.90892 0.85958 0.90987 0.89058 0.86921 0.86570 0.87059 0.76665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.75 13.67 21.65 0.30 -55.46 16 2 C -0.02 -0.96 5.49 84.86 0.47 -0.49 16 3 Si 1.13 49.00 29.92 68.60 2.05 51.06 16 4 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 6 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.61 -34.62 9.50 67.95 0.65 -33.98 16 8 H 0.07 3.62 7.80 -2.91 -0.02 3.60 16 9 S -0.23 -11.46 20.46 -56.49 -1.16 -12.62 16 10 C -0.07 -2.74 5.67 71.98 0.41 -2.33 16 11 C -0.09 -2.42 5.60 30.60 0.17 -2.25 16 12 C 0.08 1.93 5.47 71.98 0.39 2.32 16 13 O -0.34 -7.07 10.22 -51.47 -0.53 -7.60 16 14 C 0.45 8.82 7.10 71.23 0.51 9.32 16 15 O -0.53 -14.44 16.15 21.96 0.35 -14.09 16 16 C 0.16 1.84 3.57 44.36 0.16 2.00 16 17 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 18 C -0.13 -0.88 5.29 30.68 0.16 -0.72 16 19 C -0.11 -0.36 6.03 30.73 0.19 -0.18 16 20 C -0.13 -1.18 6.03 29.71 0.18 -1.00 16 21 C 0.52 9.59 7.71 87.72 0.68 10.27 16 22 O -0.60 -17.18 17.78 -3.04 -0.05 -17.23 16 23 N -0.71 -11.54 4.79 -450.24 -2.16 -13.69 16 24 H 0.26 16.50 7.12 -92.70 -0.66 15.84 16 25 H 0.07 2.58 8.14 -2.40 -0.02 2.56 16 26 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.07 1.79 8.13 -2.39 -0.02 1.77 16 30 H 0.07 1.77 8.13 -2.39 -0.02 1.75 16 31 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.07 0.67 8.10 -2.38 -0.02 0.65 16 33 H 0.09 0.13 8.13 -2.38 -0.02 0.11 16 34 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 35 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.40 7.52 8.46 -92.71 -0.78 6.73 16 Total: -1.00 -77.96 330.94 3.16 -74.80 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.40 Total: 11.86 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 3.95 Total: -17.03 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: -1.86 Total: -69.15 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -0.23 Total: -38.91 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.05 Total: 51.06 kcal Atomic # 16 Polarization: -11.46 SS G_CDS: -1.16 Total: -12.62 kcal Total: -77.96 3.16 -74.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805553949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.778 kcal (2) G-P(sol) polarization free energy of solvation -77.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds