Wall clock time and date at job start Wed Apr 15 2020 11:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86806 * 119.99980 * 2 1 4 4 H 1.48492 * 109.47029 * 90.00328 * 3 2 1 5 5 H 1.48503 * 109.46851 * 209.99993 * 3 2 1 6 6 H 1.48493 * 109.46894 * 330.00081 * 3 2 1 7 7 C 1.38803 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99796 * 359.97438 * 7 2 1 9 9 S 1.76203 * 120.00048 * 179.97438 * 7 2 1 10 10 C 1.80998 * 100.00007 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47131 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00039 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99862 * 179.97438 * 11 10 9 14 14 C 1.47332 * 121.02231 * 352.58330 * 13 11 10 15 15 C 1.53324 * 108.24641 * 130.63224 * 14 13 11 16 16 O 1.42967 * 109.39088 * 52.91527 * 15 14 13 17 17 C 1.43132 * 114.10227 * 296.93915 * 16 15 14 18 18 C 1.46321 * 121.01926 * 172.30711 * 13 11 10 19 19 C 1.53841 * 110.37693 * 106.31711 * 18 13 11 20 20 C 1.54640 * 103.80720 * 240.89553 * 19 18 13 21 21 O 1.44480 * 104.83328 * 23.88336 * 20 19 18 22 22 C 1.44601 * 105.40575 * 319.92405 * 21 20 19 23 23 H 0.96999 * 119.99781 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47106 * 299.99759 * 10 9 7 25 25 H 1.08996 * 109.47096 * 59.99550 * 10 9 7 26 26 H 1.08995 * 109.71543 * 250.31896 * 14 13 11 27 27 H 1.09003 * 109.70707 * 10.90625 * 14 13 11 28 28 H 1.09005 * 109.48399 * 172.88990 * 15 14 13 29 29 H 1.09002 * 109.48754 * 292.93572 * 15 14 13 30 30 H 1.09003 * 109.50689 * 181.12206 * 17 16 15 31 31 H 1.08994 * 109.50712 * 301.20600 * 17 16 15 32 32 H 1.09000 * 110.56314 * 359.48092 * 19 18 13 33 33 H 1.08999 * 110.55794 * 122.17328 * 19 18 13 34 34 H 1.09000 * 110.36526 * 142.71470 * 20 19 18 35 35 H 1.08998 * 110.37225 * 265.04221 * 20 19 18 36 36 H 1.09006 * 110.40112 * 281.04878 * 22 21 20 37 37 H 1.08991 * 110.40380 * 158.62819 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 1.4000 5 1 3.5479 1.4402 -0.7001 6 1 1.4478 2.6526 -0.7000 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1373 0.0014 9 16 3.7724 -1.2020 -0.0001 10 6 4.0867 -2.9845 0.0001 11 6 5.5732 -3.2325 -0.0010 12 8 6.3441 -2.2963 -0.0015 13 7 6.0458 -4.4946 -0.0005 14 6 5.1397 -5.6446 0.1641 15 6 5.4486 -6.6613 -0.9412 16 8 6.8462 -6.9622 -0.9322 17 6 7.6873 -5.8412 -1.2230 18 6 7.4738 -4.7651 -0.1695 19 6 8.0993 -5.1959 1.1684 20 6 9.1698 -4.1137 1.4407 21 8 8.7253 -2.9581 0.6961 22 6 8.2220 -3.4781 -0.5558 23 1 -0.4850 0.8401 0.0004 24 1 3.6442 -3.4314 0.8904 25 1 3.6434 -3.4318 -0.8895 26 1 5.3004 -6.1026 1.1401 27 1 4.1049 -5.3123 0.0800 28 1 4.8790 -7.5740 -0.7653 29 1 5.1732 -6.2415 -1.9087 30 1 8.7305 -6.1574 -1.2161 31 1 7.4346 -5.4416 -2.2050 32 1 7.3486 -5.1992 1.9586 33 1 8.5607 -6.1791 1.0762 34 1 9.2151 -3.8844 2.5053 35 1 10.1441 -4.4448 1.0813 36 1 9.0464 -3.7062 -1.2315 37 1 7.5384 -2.7649 -1.0162 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194372452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:28 Heat of formation + Delta-G solvation = -87.394574 kcal Electronic energy + Delta-G solvation = -21726.961655 eV Core-core repulsion = 18404.249795 eV Total energy + Delta-G solvation = -3322.711860 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.31929 -38.36660 -38.12337 -34.80961 -32.80339 -32.46472 -30.00523 -29.72259 -27.87228 -25.98431 -25.62575 -23.26246 -22.90564 -21.27741 -18.98645 -17.78921 -17.10494 -16.83711 -16.43208 -16.12369 -15.82682 -15.22636 -15.00835 -14.88141 -14.56975 -14.38553 -13.93087 -13.55054 -13.33835 -12.91824 -12.81782 -12.42492 -12.27633 -11.73021 -11.66480 -11.49334 -11.25955 -11.20521 -11.02580 -10.90920 -10.62621 -10.36722 -9.87023 -9.68348 -9.02724 -8.82725 -8.56474 -8.52302 -6.95014 -6.31539 -4.03633 2.53413 2.78346 3.05368 3.32138 3.44796 3.49034 3.53681 3.95463 4.28031 4.31208 4.47989 4.52931 4.67550 4.78594 4.84956 4.94214 4.97797 5.05388 5.07795 5.13040 5.22081 5.27922 5.43568 5.45545 5.57495 5.59263 5.66083 5.70041 5.82492 5.91283 6.08237 6.55403 6.73407 6.92962 7.32539 7.91329 8.35451 8.38304 9.14703 10.77629 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.025113 B = 0.004912 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.710094 B = 5698.969126 C = 6493.849186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.235 1.235 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.088 0.912 9 S -0.138 6.138 10 C -0.123 4.123 11 C 0.530 3.470 12 O -0.486 6.486 13 N -0.610 5.610 14 C 0.073 3.927 15 C 0.046 3.954 16 O -0.376 6.376 17 C 0.066 3.934 18 C 0.109 3.891 19 C -0.156 4.156 20 C 0.040 3.960 21 O -0.346 6.346 22 C 0.032 3.968 23 H 0.271 0.729 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.102 0.898 28 H 0.108 0.892 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.081 -15.247 -1.187 21.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.159 1.159 6 H -0.199 1.199 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.088 5.912 10 C -0.274 4.274 11 C 0.319 3.681 12 O -0.360 6.360 13 N -0.347 5.347 14 C -0.050 4.050 15 C -0.032 4.032 16 O -0.294 6.294 17 C -0.012 4.012 18 C 0.022 3.978 19 C -0.195 4.195 20 C -0.038 4.038 21 O -0.264 6.264 22 C -0.045 4.045 23 H 0.081 0.919 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.095 0.905 27 H 0.120 0.880 28 H 0.126 0.874 29 H 0.078 0.922 30 H 0.125 0.875 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 16.111 -13.690 -1.079 21.169 hybrid contribution -1.044 -0.512 0.060 1.164 sum 15.067 -14.202 -1.019 20.730 Atomic orbital electron populations 1.69936 1.05926 1.27805 1.47982 1.24702 0.94433 0.98952 0.93108 0.86742 0.81882 0.83280 0.79997 1.19176 1.15904 1.19924 1.22304 0.88256 0.97515 1.58938 0.89432 1.84829 1.09283 0.99659 1.97394 1.23353 0.93984 1.04561 1.05473 1.20345 0.90661 0.81575 0.75490 1.90625 1.56962 1.42149 1.46304 1.47860 1.06179 1.06015 1.74638 1.22490 0.95447 0.87211 0.99894 1.23022 0.82529 0.99467 0.98164 1.87992 1.16473 1.33172 1.91783 1.22754 0.95823 0.86281 0.96347 1.22004 0.82297 0.97284 0.96176 1.23287 0.99254 0.99751 0.97227 1.23432 0.95988 0.86463 0.97895 1.89323 1.80862 1.27390 1.28825 1.24258 0.97049 0.94953 0.88204 0.91911 0.88632 0.88606 0.90486 0.87981 0.87414 0.92209 0.87520 0.92156 0.90158 0.89757 0.89376 0.92639 0.93297 0.83550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.35 13.97 55.49 0.78 -25.57 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.69 27.74 -169.99 -4.72 16.98 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 6 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.86 10.04 30.94 0.31 -14.54 16 8 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 9 S -0.14 -3.45 18.55 -107.50 -1.99 -5.44 16 10 C -0.12 -2.33 4.54 36.01 0.16 -2.17 16 11 C 0.53 9.31 7.44 -10.99 -0.08 9.23 16 12 O -0.49 -10.06 11.27 -15.19 -0.17 -10.23 16 13 N -0.61 -8.21 2.62 -157.67 -0.41 -8.62 16 14 C 0.07 0.75 6.38 -3.42 -0.02 0.73 16 15 C 0.05 0.40 6.96 37.33 0.26 0.66 16 16 O -0.38 -3.83 10.69 -35.23 -0.38 -4.20 16 17 C 0.07 0.63 5.32 36.70 0.20 0.83 16 18 C 0.11 1.30 0.98 -131.52 -0.13 1.18 16 19 C -0.16 -1.70 6.25 -25.43 -0.16 -1.86 16 20 C 0.04 0.46 7.65 38.02 0.29 0.75 16 21 O -0.35 -5.61 10.81 -55.99 -0.60 -6.21 16 22 C 0.03 0.44 5.79 37.57 0.22 0.66 16 23 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.10 1.70 7.75 -51.92 -0.40 1.30 16 25 H 0.10 1.67 7.94 -51.92 -0.41 1.26 16 26 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 27 H 0.10 1.02 6.07 -51.93 -0.32 0.70 16 28 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.11 0.81 8.05 -51.93 -0.42 0.39 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.95 7.87 -51.93 -0.41 0.55 16 33 H 0.08 0.75 7.67 -51.93 -0.40 0.35 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.56 7.85 -51.93 -0.41 0.15 16 37 H 0.15 2.50 4.85 -55.73 -0.27 2.23 16 LS Contribution 306.61 15.07 4.62 4.62 Total: -1.00 -33.79 306.61 -7.07 -40.86 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -5.14 Total: -0.35 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 0.95 Total: -1.82 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.36 Total: -34.19 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -1.15 Total: -20.64 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.72 Total: 16.98 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -1.99 Total: -5.44 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.79 -7.07 -40.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194372452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.536 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds