Wall clock time and date at job start Wed Apr 15 2020 11:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86806 * 119.99980 * 2 1 4 4 H 1.48492 * 109.47029 * 90.00328 * 3 2 1 5 5 H 1.48503 * 109.46851 * 209.99993 * 3 2 1 6 6 H 1.48493 * 109.46894 * 330.00081 * 3 2 1 7 7 C 1.38803 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99796 * 359.97438 * 7 2 1 9 9 S 1.76203 * 120.00048 * 179.97438 * 7 2 1 10 10 C 1.80998 * 100.00007 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47131 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00039 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99862 * 179.97438 * 11 10 9 14 14 C 1.47332 * 121.02231 * 352.58330 * 13 11 10 15 15 C 1.53324 * 108.24641 * 130.63224 * 14 13 11 16 16 O 1.42967 * 109.39088 * 52.91527 * 15 14 13 17 17 C 1.43132 * 114.10227 * 296.93915 * 16 15 14 18 18 C 1.46321 * 121.01926 * 172.30711 * 13 11 10 19 19 C 1.53841 * 110.37693 * 106.31711 * 18 13 11 20 20 C 1.54640 * 103.80720 * 240.89553 * 19 18 13 21 21 O 1.44480 * 104.83328 * 23.88336 * 20 19 18 22 22 C 1.44601 * 105.40575 * 319.92405 * 21 20 19 23 23 H 0.96999 * 119.99781 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47106 * 299.99759 * 10 9 7 25 25 H 1.08996 * 109.47096 * 59.99550 * 10 9 7 26 26 H 1.08995 * 109.71543 * 250.31896 * 14 13 11 27 27 H 1.09003 * 109.70707 * 10.90625 * 14 13 11 28 28 H 1.09005 * 109.48399 * 172.88990 * 15 14 13 29 29 H 1.09002 * 109.48754 * 292.93572 * 15 14 13 30 30 H 1.09003 * 109.50689 * 181.12206 * 17 16 15 31 31 H 1.08994 * 109.50712 * 301.20600 * 17 16 15 32 32 H 1.09000 * 110.56314 * 359.48092 * 19 18 13 33 33 H 1.08999 * 110.55794 * 122.17328 * 19 18 13 34 34 H 1.09000 * 110.36526 * 142.71470 * 20 19 18 35 35 H 1.08998 * 110.37225 * 265.04221 * 20 19 18 36 36 H 1.09006 * 110.40112 * 281.04878 * 22 21 20 37 37 H 1.08991 * 110.40380 * 158.62819 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 1.4000 5 1 3.5479 1.4402 -0.7001 6 1 1.4478 2.6526 -0.7000 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1373 0.0014 9 16 3.7724 -1.2020 -0.0001 10 6 4.0867 -2.9845 0.0001 11 6 5.5732 -3.2325 -0.0010 12 8 6.3441 -2.2963 -0.0015 13 7 6.0458 -4.4946 -0.0005 14 6 5.1397 -5.6446 0.1641 15 6 5.4486 -6.6613 -0.9412 16 8 6.8462 -6.9622 -0.9322 17 6 7.6873 -5.8412 -1.2230 18 6 7.4738 -4.7651 -0.1695 19 6 8.0993 -5.1959 1.1684 20 6 9.1698 -4.1137 1.4407 21 8 8.7253 -2.9581 0.6961 22 6 8.2220 -3.4781 -0.5558 23 1 -0.4850 0.8401 0.0004 24 1 3.6442 -3.4314 0.8904 25 1 3.6434 -3.4318 -0.8895 26 1 5.3004 -6.1026 1.1401 27 1 4.1049 -5.3123 0.0800 28 1 4.8790 -7.5740 -0.7653 29 1 5.1732 -6.2415 -1.9087 30 1 8.7305 -6.1574 -1.2161 31 1 7.4346 -5.4416 -2.2050 32 1 7.3486 -5.1992 1.9586 33 1 8.5607 -6.1791 1.0762 34 1 9.2151 -3.8844 2.5053 35 1 10.1441 -4.4448 1.0813 36 1 9.0464 -3.7062 -1.2315 37 1 7.5384 -2.7649 -1.0162 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194372452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:27 Heat of formation + Delta-G solvation = -111.652891 kcal Electronic energy + Delta-G solvation = -21728.013574 eV Core-core repulsion = 18404.249795 eV Total energy + Delta-G solvation = -3323.763779 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.36125 -39.53505 -39.06496 -35.88109 -34.68556 -33.76579 -31.08326 -30.87275 -28.93410 -27.85224 -26.84792 -24.17076 -23.80441 -22.39531 -20.27933 -19.51407 -18.30996 -17.92897 -17.37427 -17.15134 -17.03597 -16.80494 -16.23465 -16.04234 -15.76119 -15.60634 -15.17029 -14.97788 -14.72084 -14.39259 -14.08787 -13.48972 -13.37312 -13.18618 -13.05216 -12.69268 -12.67715 -12.54182 -12.36629 -12.01254 -11.88675 -11.79190 -11.24704 -11.18721 -10.68916 -10.53371 -10.04553 -9.65324 -9.01324 -8.53114 -6.23759 0.93648 1.30040 1.41948 1.43894 1.50205 1.89804 2.23283 2.65249 2.71576 2.85463 3.04052 3.35820 3.55703 3.65514 3.84528 3.91469 4.09061 4.11862 4.13439 4.19404 4.26623 4.36889 4.48128 4.49501 4.54972 4.77859 4.79641 4.79968 4.85100 4.90652 5.07454 5.51899 5.69286 5.96714 6.00779 6.09719 6.14650 6.92422 7.05152 8.59252 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.025113 B = 0.004912 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.710094 B = 5698.969126 C = 6493.849186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.049 3.951 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.237 1.237 6 H -0.258 1.258 7 C -0.529 4.529 8 H 0.063 0.937 9 S -0.173 6.173 10 C -0.107 4.107 11 C 0.530 3.470 12 O -0.523 6.523 13 N -0.601 5.601 14 C 0.065 3.935 15 C 0.048 3.952 16 O -0.380 6.380 17 C 0.070 3.930 18 C 0.105 3.895 19 C -0.148 4.148 20 C 0.034 3.966 21 O -0.388 6.388 22 C 0.030 3.970 23 H 0.277 0.723 24 H 0.107 0.893 25 H 0.111 0.889 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.135 0.865 29 H 0.059 0.941 30 H 0.134 0.866 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.727 -17.199 -1.384 24.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.157 4.157 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.161 1.161 6 H -0.183 1.183 7 C -0.676 4.676 8 H 0.081 0.919 9 S 0.054 5.946 10 C -0.258 4.258 11 C 0.318 3.682 12 O -0.401 6.401 13 N -0.337 5.337 14 C -0.057 4.057 15 C -0.029 4.029 16 O -0.298 6.298 17 C -0.008 4.008 18 C 0.020 3.980 19 C -0.186 4.186 20 C -0.043 4.043 21 O -0.307 6.307 22 C -0.046 4.046 23 H 0.087 0.913 24 H 0.126 0.874 25 H 0.129 0.871 26 H 0.108 0.892 27 H 0.122 0.878 28 H 0.153 0.847 29 H 0.077 0.923 30 H 0.152 0.848 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.130 0.870 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 17.756 -15.695 -1.278 23.733 hybrid contribution -1.514 -0.067 0.139 1.522 sum 16.242 -15.762 -1.139 22.662 Atomic orbital electron populations 1.70009 1.07248 1.29012 1.49133 1.25511 0.95213 1.02088 0.92878 0.85904 0.80717 0.79832 0.80150 1.18892 1.16124 1.18255 1.22450 0.90199 0.96692 1.58271 0.91870 1.84757 1.06475 1.05816 1.97541 1.23310 0.95972 0.99694 1.06808 1.20035 0.89487 0.82767 0.75913 1.90657 1.57350 1.43736 1.48344 1.47851 1.07653 1.05299 1.72848 1.22783 0.94957 0.86448 1.01468 1.23131 0.82377 1.00086 0.97324 1.88000 1.16933 1.33166 1.91671 1.22833 0.97310 0.85376 0.95232 1.22217 0.80858 0.97179 0.97776 1.23251 0.98702 1.00783 0.95890 1.23661 0.97399 0.85482 0.97720 1.89272 1.81416 1.30006 1.30025 1.24149 0.97609 0.94896 0.87993 0.91350 0.87445 0.87074 0.89150 0.87840 0.84680 0.92289 0.84799 0.92079 0.91401 0.86954 0.89336 0.89914 0.90572 0.86976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.56 13.97 21.65 0.30 -55.26 16 2 C 0.05 2.85 5.50 84.86 0.47 3.32 16 3 Si 0.91 45.13 27.74 68.60 1.90 47.03 16 4 H -0.26 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.24 -11.75 6.74 99.48 0.67 -11.08 16 6 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.53 -30.59 10.04 67.96 0.68 -29.91 16 8 H 0.06 3.84 8.03 -2.91 -0.02 3.81 16 9 S -0.17 -8.70 18.55 -56.49 -1.05 -9.75 16 10 C -0.11 -4.02 4.54 71.24 0.32 -3.70 16 11 C 0.53 18.42 7.44 87.66 0.65 19.08 16 12 O -0.52 -22.02 11.27 16.83 0.19 -21.83 16 13 N -0.60 -15.23 2.62 -771.13 -2.02 -17.25 16 14 C 0.07 1.18 6.38 86.33 0.55 1.74 16 15 C 0.05 0.69 6.96 72.09 0.50 1.19 16 16 O -0.38 -6.24 10.69 -148.98 -1.59 -7.84 16 17 C 0.07 1.11 5.32 71.68 0.38 1.49 16 18 C 0.11 2.29 0.98 3.89 0.00 2.29 16 19 C -0.15 -2.80 6.25 31.44 0.20 -2.60 16 20 C 0.03 0.72 7.65 72.54 0.55 1.28 16 21 O -0.39 -12.38 10.81 -129.13 -1.40 -13.78 16 22 C 0.03 0.81 5.79 72.25 0.42 1.22 16 23 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 24 H 0.11 3.77 7.75 -2.40 -0.02 3.75 16 25 H 0.11 3.81 7.94 -2.40 -0.02 3.79 16 26 H 0.09 1.45 8.08 -2.39 -0.02 1.43 16 27 H 0.10 1.84 6.07 -2.39 -0.01 1.83 16 28 H 0.14 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.13 1.41 8.05 -2.39 -0.02 1.39 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.46 7.87 -2.39 -0.02 1.44 16 33 H 0.11 1.51 7.67 -2.39 -0.02 1.49 16 34 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 1.58 7.85 -2.38 -0.02 1.56 16 37 H 0.11 3.89 4.85 -62.50 -0.30 3.59 16 Total: -1.00 -74.61 306.61 1.81 -72.79 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.74 Total: 10.49 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 4.73 Total: -4.61 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: -1.72 Total: -72.51 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -2.80 Total: -43.44 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.90 Total: 47.03 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.05 Total: -9.75 kcal Total: -74.61 1.81 -72.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194372452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.861 kcal (2) G-P(sol) polarization free energy of solvation -74.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds