Wall clock time and date at job start Wed Apr 15 2020 11:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86791 * 119.99672 * 2 1 4 4 H 1.48506 * 109.47203 * 269.99528 * 3 2 1 5 5 H 1.48502 * 109.47045 * 149.99957 * 3 2 1 6 6 H 1.48502 * 109.47464 * 29.99924 * 3 2 1 7 7 C 1.39936 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99659 * 155.74526 * 7 2 1 9 9 C 1.41434 * 120.00327 * 335.74502 * 7 2 1 10 10 C 1.40788 * 120.17599 * 328.41541 * 9 7 2 11 11 C 1.37709 * 120.04180 * 179.73891 * 10 9 7 12 12 C 1.38380 * 120.40941 * 0.52189 * 11 10 9 13 13 C 1.39873 * 120.35738 * 359.75803 * 12 11 10 14 14 C 1.47884 * 120.02521 * 179.97438 * 13 12 11 15 15 O 1.21552 * 119.99925 * 353.07160 * 14 13 12 16 16 N 1.34774 * 120.00192 * 173.06909 * 14 13 12 17 17 C 1.48027 * 127.21280 * 4.20065 * 16 14 13 18 18 C 1.56140 * 104.53947 * 180.31937 * 17 16 14 19 19 H 1.09004 * 116.89260 * 162.24615 * 18 17 16 20 20 C 1.59280 * 98.47966 * 36.29378 * 18 17 16 21 21 C 1.49422 * 127.21632 * 184.51672 * 16 14 13 22 22 H 1.08997 * 116.29484 * 15.19162 * 21 16 14 23 23 C 1.53552 * 103.92854 * 245.85357 * 21 16 14 24 24 O 1.20831 * 126.33804 * 108.80972 * 23 21 16 25 25 O 1.35142 * 107.32550 * 288.84250 * 23 21 16 26 26 C 1.39031 * 119.95223 * 359.97438 * 13 12 11 27 27 H 0.97002 * 119.99940 * 174.18206 * 1 2 3 28 28 H 1.08004 * 119.97940 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.80033 * 180.25657 * 11 10 9 30 30 H 1.07997 * 119.81945 * 179.73498 * 12 11 10 31 31 H 1.08996 * 110.42157 * 300.50241 * 17 16 14 32 32 H 1.09001 * 110.42190 * 62.97840 * 17 16 14 33 33 H 1.09001 * 112.37451 * 189.14778 * 20 18 17 34 34 H 1.08998 * 113.57240 * 60.38258 * 20 18 17 35 35 H 1.08003 * 120.20737 * 179.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 3.5397 1.4402 0.7001 6 1 1.4396 2.6527 0.7000 7 6 2.0079 -1.2119 0.0005 8 1 3.0165 -1.2533 -0.3837 9 6 1.3944 -2.3825 0.5042 10 6 0.4560 -2.2957 1.5501 11 6 -0.1437 -3.4367 2.0348 12 6 0.1777 -4.6750 1.5074 13 6 1.1120 -4.7815 0.4720 14 6 1.4504 -6.1086 -0.0859 15 8 1.0146 -7.1162 0.4359 16 7 2.2419 -6.2009 -1.1728 17 6 2.9254 -5.0940 -1.8791 18 6 3.6843 -5.7881 -3.0540 19 1 4.0115 -5.1499 -3.8749 20 6 2.6065 -6.9086 -3.4004 21 6 2.6084 -7.4411 -1.9212 22 1 2.0027 -8.3243 -1.7182 23 6 4.1196 -7.5807 -1.6881 24 8 4.6641 -8.4104 -0.9988 25 8 4.7280 -6.6033 -2.3958 26 6 1.7224 -3.6387 -0.0324 27 1 -0.4850 -0.8357 -0.0852 28 1 0.2028 -1.3331 1.9695 29 1 -0.8661 -3.3651 2.8344 30 1 -0.2953 -5.5640 1.8976 31 1 2.1978 -4.3689 -2.2437 32 1 3.6478 -4.6114 -1.2209 33 1 2.9853 -7.6429 -4.1112 34 1 1.6393 -6.5052 -3.6999 35 1 2.4448 -3.7162 -0.8316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188676480.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:11 Heat of formation + Delta-G solvation = -47.924588 kcal Electronic energy + Delta-G solvation = -22494.005922 eV Core-core repulsion = 19037.561658 eV Total energy + Delta-G solvation = -3456.444264 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.06543 -39.18573 -37.84324 -37.31956 -35.43668 -33.95665 -31.58379 -30.05190 -29.62527 -28.93735 -25.28119 -25.17163 -22.70843 -22.39317 -21.17466 -20.54158 -19.59653 -18.09233 -17.61194 -17.21451 -16.41634 -16.12070 -15.26841 -15.05971 -14.77167 -14.25779 -14.22343 -13.94270 -13.66627 -13.28389 -13.07886 -12.84794 -12.53664 -12.47188 -12.19701 -12.08914 -11.84343 -11.35515 -11.10246 -10.86429 -10.69058 -10.56155 -10.49360 -10.21641 -9.58528 -9.42808 -9.11094 -8.73742 -7.99694 -7.79974 -7.31700 -4.63340 1.73219 1.88745 2.57488 2.76997 2.92233 3.06147 3.12933 3.27756 3.36639 3.59013 3.73870 3.88858 3.92012 4.19043 4.45727 4.85701 5.06094 5.14142 5.22195 5.26260 5.33955 5.42842 5.45807 5.85863 5.95846 6.17411 6.31518 6.46052 6.55365 6.73857 7.02853 7.26041 7.33883 7.45224 7.47189 7.60009 7.67906 7.93738 8.01264 8.38750 8.49885 8.69899 9.94928 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.019461 B = 0.005138 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.433716 B = 5448.240070 C = 6422.191258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.041 3.959 3 Si 1.065 2.935 4 H -0.277 1.277 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.531 4.531 8 H 0.077 0.923 9 C 0.089 3.911 10 C -0.183 4.183 11 C -0.097 4.097 12 C -0.182 4.182 13 C -0.106 4.106 14 C 0.588 3.412 15 O -0.539 6.539 16 N -0.619 5.619 17 C 0.068 3.932 18 C 0.065 3.935 19 H 0.176 0.824 20 C -0.162 4.162 21 C 0.077 3.923 22 H 0.151 0.849 23 C 0.471 3.529 24 O -0.443 6.443 25 O -0.340 6.340 26 C -0.216 4.216 27 H 0.297 0.703 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.640 -4.879 -9.284 11.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.181 4.181 3 Si 0.889 3.111 4 H -0.202 1.202 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.095 0.905 9 C 0.087 3.913 10 C -0.202 4.202 11 C -0.115 4.115 12 C -0.202 4.202 13 C -0.109 4.109 14 C 0.383 3.617 15 O -0.416 6.416 16 N -0.358 5.358 17 C -0.054 4.054 18 C 0.010 3.990 19 H 0.193 0.807 20 C -0.200 4.200 21 C -0.028 4.028 22 H 0.169 0.831 23 C 0.308 3.692 24 O -0.324 6.324 25 O -0.256 6.256 26 C -0.235 4.235 27 H 0.110 0.890 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.135 0.865 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.584 -4.115 -8.494 10.096 hybrid contribution 0.028 -1.618 0.050 1.619 sum 3.612 -5.733 -8.445 10.827 Atomic orbital electron populations 1.70455 1.08160 1.34021 1.29681 1.26962 0.95632 1.04202 0.91264 0.83638 0.75754 0.73762 0.77973 1.20235 1.20034 1.19836 1.20463 1.02549 0.93704 1.39184 0.90454 1.17633 0.91060 0.92534 0.90120 1.21418 1.02802 0.97220 0.98794 1.20643 0.99122 0.92661 0.99078 1.20446 1.02499 0.96884 1.00353 1.19228 1.01619 0.90234 0.99832 1.18718 0.75634 0.90344 0.77050 1.90713 1.53509 1.38408 1.58953 1.49142 1.50274 1.06530 1.29854 1.23755 0.97344 0.90413 0.93885 1.26533 0.84466 0.92700 0.95310 0.80740 1.25031 1.01495 0.98521 0.94943 1.24439 0.93333 0.92774 0.92245 0.83130 1.24112 0.89924 0.78750 0.76406 1.90717 1.74102 1.33498 1.34045 1.87721 1.36444 1.41273 1.60145 1.22271 1.05733 0.92199 1.03296 0.89025 0.87479 0.88182 0.87666 0.86615 0.88368 0.87687 0.86542 0.85473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.80 12.53 55.55 0.70 -19.11 16 2 C 0.04 0.95 4.92 -17.34 -0.09 0.87 16 3 Si 1.07 20.00 30.00 -169.99 -5.10 14.90 16 4 H -0.28 -4.92 7.11 56.52 0.40 -4.52 16 5 H -0.28 -5.01 7.11 56.52 0.40 -4.61 16 6 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.53 -12.67 8.96 -37.73 -0.34 -13.01 16 8 H 0.08 1.77 7.95 -52.48 -0.42 1.35 16 9 C 0.09 2.13 5.15 -106.87 -0.55 1.58 16 10 C -0.18 -4.32 8.01 -38.81 -0.31 -4.64 16 11 C -0.10 -2.11 10.01 -39.72 -0.40 -2.51 16 12 C -0.18 -4.02 9.60 -38.92 -0.37 -4.40 16 13 C -0.11 -2.30 5.87 -105.04 -0.62 -2.92 16 14 C 0.59 11.91 7.86 -12.31 -0.10 11.81 16 15 O -0.54 -12.21 16.75 5.32 0.09 -12.12 16 16 N -0.62 -9.83 2.95 -159.38 -0.47 -10.30 16 17 C 0.07 0.86 4.32 -1.52 -0.01 0.86 16 18 C 0.06 0.58 6.15 -21.54 -0.13 0.45 16 19 H 0.18 0.84 8.14 -51.93 -0.42 0.41 16 20 C -0.16 -1.30 7.09 -20.94 -0.15 -1.45 16 21 C 0.08 1.00 5.18 -63.73 -0.33 0.67 16 22 H 0.15 1.92 8.09 -51.93 -0.42 1.50 16 23 C 0.47 7.17 8.00 37.44 0.30 7.47 16 24 O -0.44 -8.32 18.00 -18.25 -0.33 -8.65 16 25 O -0.34 -4.45 10.96 -41.32 -0.45 -4.90 16 26 C -0.22 -4.63 8.52 -38.44 -0.33 -4.96 16 27 H 0.30 7.53 6.88 -40.82 -0.28 7.25 16 28 H 0.11 2.60 6.92 -52.48 -0.36 2.24 16 29 H 0.10 1.93 8.06 -52.49 -0.42 1.50 16 30 H 0.11 2.26 7.65 -52.49 -0.40 1.86 16 31 H 0.12 1.40 6.82 -51.93 -0.35 1.05 16 32 H 0.10 1.38 6.97 -51.93 -0.36 1.01 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.13 2.34 2.86 -53.09 -0.15 2.19 16 LS Contribution 298.76 15.07 4.50 4.50 Total: -1.00 -31.10 298.76 -7.72 -38.81 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -3.24 Total: 7.06 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -3.41 Total: -10.19 kcal Atomic # 7 Polarization: -29.64 SS G_CDS: 0.23 Total: -29.41 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.69 Total: -25.68 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.10 Total: 14.90 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.10 -7.72 -38.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188676480.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.110 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds