Wall clock time and date at job start Wed Apr 15 2020 11:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86791 * 119.99672 * 2 1 4 4 H 1.48506 * 109.47203 * 269.99528 * 3 2 1 5 5 H 1.48502 * 109.47045 * 149.99957 * 3 2 1 6 6 H 1.48502 * 109.47464 * 29.99924 * 3 2 1 7 7 C 1.39936 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99659 * 155.74526 * 7 2 1 9 9 C 1.41434 * 120.00327 * 335.74502 * 7 2 1 10 10 C 1.40788 * 120.17599 * 328.41541 * 9 7 2 11 11 C 1.37709 * 120.04180 * 179.73891 * 10 9 7 12 12 C 1.38380 * 120.40941 * 0.52189 * 11 10 9 13 13 C 1.39873 * 120.35738 * 359.75803 * 12 11 10 14 14 C 1.47884 * 120.02521 * 179.97438 * 13 12 11 15 15 O 1.21552 * 119.99925 * 353.07160 * 14 13 12 16 16 N 1.34774 * 120.00192 * 173.06909 * 14 13 12 17 17 C 1.48027 * 127.21280 * 4.20065 * 16 14 13 18 18 C 1.56140 * 104.53947 * 180.31937 * 17 16 14 19 19 H 1.09004 * 116.89260 * 162.24615 * 18 17 16 20 20 C 1.59280 * 98.47966 * 36.29378 * 18 17 16 21 21 C 1.49422 * 127.21632 * 184.51672 * 16 14 13 22 22 H 1.08997 * 116.29484 * 15.19162 * 21 16 14 23 23 C 1.53552 * 103.92854 * 245.85357 * 21 16 14 24 24 O 1.20831 * 126.33804 * 108.80972 * 23 21 16 25 25 O 1.35142 * 107.32550 * 288.84250 * 23 21 16 26 26 C 1.39031 * 119.95223 * 359.97438 * 13 12 11 27 27 H 0.97002 * 119.99940 * 174.18206 * 1 2 3 28 28 H 1.08004 * 119.97940 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.80033 * 180.25657 * 11 10 9 30 30 H 1.07997 * 119.81945 * 179.73498 * 12 11 10 31 31 H 1.08996 * 110.42157 * 300.50241 * 17 16 14 32 32 H 1.09001 * 110.42190 * 62.97840 * 17 16 14 33 33 H 1.09001 * 112.37451 * 189.14778 * 20 18 17 34 34 H 1.08998 * 113.57240 * 60.38258 * 20 18 17 35 35 H 1.08003 * 120.20737 * 179.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 3.5397 1.4402 0.7001 6 1 1.4396 2.6527 0.7000 7 6 2.0079 -1.2119 0.0005 8 1 3.0165 -1.2533 -0.3837 9 6 1.3944 -2.3825 0.5042 10 6 0.4560 -2.2957 1.5501 11 6 -0.1437 -3.4367 2.0348 12 6 0.1777 -4.6750 1.5074 13 6 1.1120 -4.7815 0.4720 14 6 1.4504 -6.1086 -0.0859 15 8 1.0146 -7.1162 0.4359 16 7 2.2419 -6.2009 -1.1728 17 6 2.9254 -5.0940 -1.8791 18 6 3.6843 -5.7881 -3.0540 19 1 4.0115 -5.1499 -3.8749 20 6 2.6065 -6.9086 -3.4004 21 6 2.6084 -7.4411 -1.9212 22 1 2.0027 -8.3243 -1.7182 23 6 4.1196 -7.5807 -1.6881 24 8 4.6641 -8.4104 -0.9988 25 8 4.7280 -6.6033 -2.3958 26 6 1.7224 -3.6387 -0.0324 27 1 -0.4850 -0.8357 -0.0852 28 1 0.2028 -1.3331 1.9695 29 1 -0.8661 -3.3651 2.8344 30 1 -0.2953 -5.5640 1.8976 31 1 2.1978 -4.3689 -2.2437 32 1 3.6478 -4.6114 -1.2209 33 1 2.9853 -7.6429 -4.1112 34 1 1.6393 -6.5052 -3.6999 35 1 2.4448 -3.7162 -0.8316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188676480.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:11 Heat of formation + Delta-G solvation = -66.742430 kcal Electronic energy + Delta-G solvation = -22494.821925 eV Core-core repulsion = 19037.561658 eV Total energy + Delta-G solvation = -3457.260267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.14711 -40.72737 -39.17130 -38.97264 -36.65578 -35.72104 -32.91704 -31.65366 -31.04881 -30.17737 -27.01052 -26.42315 -24.10405 -23.52566 -22.74319 -21.93313 -20.92597 -19.56431 -18.80564 -18.59445 -17.70599 -17.37482 -16.89869 -16.57539 -16.12602 -15.84038 -15.58610 -15.35121 -14.97081 -14.67285 -14.51994 -14.17834 -14.06626 -13.64059 -13.42735 -13.11707 -13.05090 -12.77876 -12.71320 -12.40167 -12.20274 -11.94957 -11.82573 -11.64679 -11.26697 -10.97216 -10.82589 -10.04453 -9.74754 -9.59364 -9.14302 -6.48215 0.09935 0.60759 0.81327 1.55148 1.60364 1.68227 1.82698 1.84153 1.86350 2.36497 2.55086 2.72352 2.82141 2.97528 3.40558 3.44984 3.52483 4.10738 4.18485 4.23609 4.33898 4.43165 4.55580 4.63178 4.66762 4.76057 4.79036 4.82304 5.00589 5.29269 5.29930 5.60031 5.65153 5.72879 5.80515 6.05095 6.11587 6.18220 6.21828 6.66729 6.84885 6.91973 8.09926 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.019461 B = 0.005138 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.433716 B = 5448.240070 C = 6422.191258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.008 3.992 3 Si 1.114 2.886 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.278 1.278 7 C -0.551 4.551 8 H 0.085 0.915 9 C 0.065 3.935 10 C -0.204 4.204 11 C -0.096 4.096 12 C -0.194 4.194 13 C -0.116 4.116 14 C 0.584 3.416 15 O -0.574 6.574 16 N -0.617 5.617 17 C 0.052 3.948 18 C 0.084 3.916 19 H 0.230 0.770 20 C -0.135 4.135 21 C 0.066 3.934 22 H 0.149 0.851 23 C 0.469 3.531 24 O -0.491 6.491 25 O -0.347 6.347 26 C -0.209 4.209 27 H 0.282 0.718 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.108 0.892 31 H 0.127 0.873 32 H 0.084 0.916 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.713 -4.358 -11.979 13.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.208 4.208 3 Si 0.932 3.068 4 H -0.180 1.180 5 H -0.191 1.191 6 H -0.203 1.203 7 C -0.579 4.579 8 H 0.103 0.897 9 C 0.062 3.938 10 C -0.223 4.223 11 C -0.114 4.114 12 C -0.214 4.214 13 C -0.119 4.119 14 C 0.377 3.623 15 O -0.454 6.454 16 N -0.354 5.354 17 C -0.069 4.069 18 C 0.031 3.969 19 H 0.247 0.753 20 C -0.173 4.173 21 C -0.038 4.038 22 H 0.166 0.834 23 C 0.309 3.691 24 O -0.375 6.375 25 O -0.263 6.263 26 C -0.228 4.228 27 H 0.094 0.906 28 H 0.111 0.889 29 H 0.140 0.860 30 H 0.126 0.874 31 H 0.145 0.855 32 H 0.102 0.898 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.675 -3.589 -11.249 12.699 hybrid contribution -0.296 -1.860 0.868 2.074 sum 4.379 -5.449 -10.381 12.515 Atomic orbital electron populations 1.70563 1.09019 1.33092 1.31871 1.28253 0.95568 1.07211 0.89766 0.83025 0.74717 0.69987 0.79072 1.18039 1.19083 1.20321 1.20686 1.02958 0.94263 1.40028 0.89741 1.17989 0.91545 0.93727 0.90527 1.21397 1.04128 0.97082 0.99729 1.20846 0.99112 0.92081 0.99342 1.20649 1.02938 0.97001 1.00856 1.19522 1.01268 0.91414 0.99674 1.18453 0.76474 0.89193 0.78135 1.90686 1.55326 1.38976 1.60422 1.49089 1.48635 1.08977 1.28690 1.23972 0.97536 0.90295 0.95119 1.27074 0.83387 0.92321 0.94130 0.75335 1.25145 1.02362 0.98260 0.91489 1.24763 0.91599 0.91982 0.95480 0.83366 1.24480 0.90752 0.78319 0.75578 1.90684 1.75168 1.35565 1.36091 1.87725 1.37989 1.40734 1.59803 1.22659 1.05520 0.91164 1.03479 0.90593 0.88940 0.85999 0.87431 0.85494 0.89786 0.84270 0.84537 0.82479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.20 12.53 21.82 0.27 -40.92 16 2 C 0.01 0.38 4.92 85.25 0.42 0.80 16 3 Si 1.11 39.26 30.00 68.60 2.06 41.32 16 4 H -0.26 -8.14 7.11 99.48 0.71 -7.44 16 5 H -0.27 -8.92 7.11 99.48 0.71 -8.21 16 6 H -0.28 -9.95 7.11 99.48 0.71 -9.24 16 7 C -0.55 -26.20 8.96 23.47 0.21 -25.99 16 8 H 0.08 3.78 7.95 -2.91 -0.02 3.76 16 9 C 0.06 3.12 5.15 -21.32 -0.11 3.01 16 10 C -0.20 -9.88 8.01 22.77 0.18 -9.69 16 11 C -0.10 -4.26 10.01 22.18 0.22 -4.03 16 12 C -0.19 -8.73 9.60 22.70 0.22 -8.52 16 13 C -0.12 -5.04 5.87 -20.14 -0.12 -5.16 16 14 C 0.58 23.62 7.86 86.80 0.68 24.30 16 15 O -0.57 -26.41 16.75 -3.88 -0.06 -26.47 16 16 N -0.62 -18.72 2.95 -776.44 -2.29 -21.01 16 17 C 0.05 1.16 4.32 87.18 0.38 1.54 16 18 C 0.08 1.09 6.15 33.96 0.21 1.30 16 19 H 0.23 0.57 8.14 -2.39 -0.02 0.55 16 20 C -0.14 -1.52 7.09 34.35 0.24 -1.27 16 21 C 0.07 1.58 5.18 46.09 0.24 1.82 16 22 H 0.15 3.63 8.09 -2.39 -0.02 3.61 16 23 C 0.47 13.68 8.00 72.17 0.58 14.25 16 24 O -0.49 -18.60 18.00 21.47 0.39 -18.21 16 25 O -0.35 -8.05 10.96 -61.06 -0.67 -8.72 16 26 C -0.21 -8.92 8.52 23.01 0.20 -8.72 16 27 H 0.28 14.73 6.88 -92.71 -0.64 14.09 16 28 H 0.09 4.67 6.92 -2.91 -0.02 4.65 16 29 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 30 H 0.11 4.72 7.65 -2.91 -0.02 4.70 16 31 H 0.13 2.65 6.82 -2.39 -0.02 2.64 16 32 H 0.08 2.19 6.97 -2.39 -0.02 2.17 16 33 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.16 5.57 2.86 -3.48 -0.01 5.56 16 Total: -1.00 -71.45 298.76 4.51 -66.93 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 1.27 Total: 23.44 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 3.55 Total: -16.36 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: -2.02 Total: -61.93 kcal Atomic # 8 Polarization: -53.06 SS G_CDS: -0.35 Total: -53.40 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.06 Total: 41.32 kcal Total: -71.45 4.51 -66.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188676480.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.191 kcal (2) G-P(sol) polarization free energy of solvation -71.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds