Wall clock time and date at job start Wed Apr 15 2020 11:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00046 * 2 1 4 4 H 1.48497 * 109.46958 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46758 * 299.99295 * 3 2 1 6 6 H 1.48497 * 109.47542 * 59.99583 * 3 2 1 7 7 C 1.38951 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00093 * 198.26874 * 7 2 1 9 9 N 1.37096 * 120.00005 * 18.27384 * 7 2 1 10 10 C 1.34774 * 119.99971 * 44.46349 * 9 7 2 11 11 O 1.21295 * 120.00115 * 359.72618 * 10 9 7 12 12 C 1.50701 * 119.99918 * 179.73206 * 10 9 7 13 13 H 1.09004 * 109.55025 * 334.99456 * 12 10 9 14 14 C 1.53048 * 109.54725 * 214.80770 * 12 10 9 15 15 C 1.52591 * 109.98233 * 176.49328 * 14 12 10 16 16 C 1.52588 * 110.64127 * 69.98720 * 15 14 12 17 17 C 1.53034 * 109.98384 * 290.00648 * 16 15 14 18 18 S 1.81669 * 109.55343 * 95.19252 * 12 10 9 19 19 O 1.42103 * 108.66001 * 288.48180 * 18 12 10 20 20 O 1.42090 * 108.66427 * 59.82590 * 18 12 10 21 21 C 1.46498 * 119.99830 * 224.19378 * 9 7 2 22 22 C 1.53003 * 117.50049 * 3.57047 * 21 9 7 23 23 C 1.53002 * 117.49786 * 294.90869 * 21 9 7 24 24 H 0.97000 * 119.99965 * 354.95978 * 1 2 3 25 25 H 1.08999 * 109.37875 * 296.64781 * 14 12 10 26 26 H 1.08999 * 109.38568 * 56.33628 * 14 12 10 27 27 H 1.09000 * 109.23678 * 190.28112 * 15 14 12 28 28 H 1.08998 * 109.24463 * 309.68201 * 15 14 12 29 29 H 1.08996 * 109.38510 * 50.17227 * 16 15 14 30 30 H 1.09004 * 109.38066 * 169.85188 * 16 15 14 31 31 H 1.09008 * 109.54703 * 183.50452 * 17 16 15 32 32 H 1.08998 * 109.55386 * 303.70138 * 17 16 15 33 33 H 1.08999 * 115.55403 * 149.24456 * 21 9 7 34 34 H 1.08995 * 117.49425 * 0.02562 * 22 21 9 35 35 H 1.08994 * 117.49837 * 145.01961 * 22 21 9 36 36 H 1.08996 * 117.50377 * 214.97893 * 23 21 9 37 37 H 1.09004 * 117.49544 * 0.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2127 6 1 1.8894 2.3966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0481 -1.2268 0.2937 9 7 1.3753 -2.3609 -0.3712 10 6 0.5826 -2.3750 -1.4611 11 8 0.4258 -1.3625 -2.1103 12 6 -0.1091 -3.6489 -1.8733 13 1 0.4503 -4.5057 -1.4975 14 6 -0.1874 -3.7182 -3.4002 15 6 -0.8079 -5.0441 -3.8308 16 6 -2.2916 -5.0838 -3.4768 17 6 -2.4649 -5.1779 -1.9592 18 16 -1.7924 -3.6751 -1.1905 19 8 -1.7105 -3.8780 0.2135 20 8 -2.5040 -2.5522 -1.6921 21 6 1.5645 -3.5838 0.4129 22 6 2.4134 -3.4851 1.6819 23 6 2.9675 -4.1935 0.4432 24 1 -0.4850 0.8368 0.0738 25 1 -0.8001 -2.8954 -3.7686 26 1 0.8159 -3.6356 -3.8180 27 1 -0.6924 -5.1614 -4.9083 28 1 -0.2956 -5.8619 -3.3241 29 1 -2.7748 -4.1770 -3.8407 30 1 -2.7529 -5.9517 -3.9482 31 1 -3.5241 -5.2684 -1.7180 32 1 -1.9295 -6.0502 -1.5843 33 1 0.7174 -4.2696 0.4261 34 1 2.8307 -2.5102 1.9336 35 1 2.1250 -4.1061 2.5299 36 1 3.0434 -5.2803 0.4768 37 1 3.7497 -3.6844 -0.1200 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329585302.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:06 Heat of formation + Delta-G solvation = -65.428220 kcal Electronic energy + Delta-G solvation = -22605.456201 eV Core-core repulsion = 19283.696874 eV Total energy + Delta-G solvation = -3321.759327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -38.90494 -37.11960 -36.18243 -35.92670 -35.38170 -32.96879 -31.66200 -30.77926 -27.87911 -25.22572 -23.41673 -21.75136 -21.29901 -20.82564 -19.61032 -18.23196 -17.09760 -16.28201 -16.10739 -15.98935 -15.14635 -14.81218 -14.74261 -14.17200 -13.95609 -13.67453 -13.49889 -12.95985 -12.81806 -12.70042 -11.99252 -11.57528 -11.49018 -11.44747 -11.37337 -11.13762 -11.12112 -10.92916 -10.90078 -10.75858 -10.66825 -10.19852 -10.18629 -10.02892 -9.82394 -9.62879 -8.78560 -8.18127 -7.13024 -6.16569 -3.91980 0.37926 3.15733 3.29226 3.37468 3.41295 3.89278 4.11500 4.22581 4.31502 4.55596 4.65459 4.77668 4.82890 4.94951 5.00602 5.12171 5.18742 5.37828 5.46707 5.56945 5.61577 5.69235 5.75614 5.79737 5.92784 5.93245 6.10237 6.18459 6.22305 6.45017 6.47577 6.70477 6.91625 7.55777 8.17417 8.92880 9.01516 9.52328 10.11880 10.91567 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.019548 B = 0.007602 C = 0.006746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.003019 B = 3682.218234 C = 4149.606770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.069 3.931 3 Si 0.917 3.083 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.345 4.345 8 H 0.085 0.915 9 N -0.410 5.410 10 C 0.490 3.510 11 O -0.509 6.509 12 C -0.577 4.577 13 H 0.137 0.863 14 C -0.089 4.089 15 C -0.139 4.139 16 C -0.108 4.108 17 C -0.622 4.622 18 S 2.413 3.587 19 O -0.935 6.935 20 O -0.915 6.915 21 C 0.061 3.939 22 C -0.168 4.168 23 C -0.207 4.207 24 H 0.271 0.729 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.071 -13.044 -4.189 13.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.144 4.144 3 Si 0.744 3.256 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.210 1.210 7 C -0.473 4.473 8 H 0.103 0.897 9 N -0.131 5.131 10 C 0.274 3.726 11 O -0.386 6.386 12 C -0.690 4.690 13 H 0.154 0.846 14 C -0.128 4.128 15 C -0.176 4.176 16 C -0.147 4.147 17 C -0.749 4.749 18 S 2.593 3.407 19 O -0.932 6.932 20 O -0.911 6.911 21 C -0.045 4.045 22 C -0.205 4.205 23 C -0.246 4.246 24 H 0.081 0.919 25 H 0.110 0.890 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.796 -11.824 -4.029 12.620 hybrid contribution 0.647 -0.074 -0.206 0.683 sum -1.149 -11.897 -4.235 12.681 Atomic orbital electron populations 1.69821 1.06592 1.28185 1.40425 1.25352 0.94930 0.99734 0.94340 0.86072 0.79635 0.82211 0.77698 1.19476 1.20446 1.20950 1.19017 0.94881 0.83538 1.49839 0.89715 1.42740 1.43052 1.07151 1.20145 1.18477 0.85090 0.86499 0.82528 1.90586 1.62027 1.32927 1.53038 1.30349 1.22773 1.07936 1.07901 0.84551 1.21127 1.04193 0.97790 0.89654 1.21739 0.94744 0.98213 1.02906 1.21257 0.97681 1.04466 0.91255 1.30468 1.12931 1.23154 1.08332 1.08970 0.78460 0.77170 0.76125 1.93551 1.86047 1.86167 1.27401 1.93571 1.69899 1.46308 1.81364 1.21851 0.92926 0.91748 0.97948 1.23082 1.03756 1.02632 0.91063 1.23361 0.99245 0.98680 1.03341 0.91905 0.89044 0.89595 0.89875 0.90997 0.89773 0.90093 0.85481 0.85449 0.87377 0.87264 0.89432 0.89604 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.98 11.75 55.50 0.65 -24.32 16 2 C 0.07 1.96 4.38 -17.47 -0.08 1.88 16 3 Si 0.92 21.97 29.59 -169.99 -5.03 16.94 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.34 -9.44 7.91 -14.93 -0.12 -9.55 16 8 H 0.09 2.20 7.27 -52.49 -0.38 1.82 16 9 N -0.41 -10.44 2.83 -107.73 -0.31 -10.75 16 10 C 0.49 12.47 5.97 -10.99 -0.07 12.41 16 11 O -0.51 -15.01 14.11 5.54 0.08 -14.94 16 12 C -0.58 -10.92 2.07 -27.86 -0.06 -10.97 16 13 H 0.14 2.10 6.40 -51.93 -0.33 1.77 16 14 C -0.09 -1.40 4.62 -26.92 -0.12 -1.52 16 15 C -0.14 -1.50 5.63 -27.15 -0.15 -1.66 16 16 C -0.11 -1.19 5.73 -26.92 -0.15 -1.34 16 17 C -0.62 -7.60 6.34 37.18 0.24 -7.37 16 18 S 2.41 46.56 4.67 -107.50 -0.50 46.05 16 19 O -0.93 -20.60 17.06 -57.81 -0.99 -21.59 16 20 O -0.91 -21.57 17.94 -57.81 -1.04 -22.61 16 21 C 0.06 1.27 5.45 -67.93 -0.37 0.90 16 22 C -0.17 -3.11 9.80 -26.69 -0.26 -3.38 16 23 C -0.21 -3.51 10.36 -26.69 -0.28 -3.79 16 24 H 0.27 7.89 8.32 -40.82 -0.34 7.55 16 25 H 0.09 1.60 7.85 -51.93 -0.41 1.19 16 26 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 29 H 0.08 0.99 8.02 -51.93 -0.42 0.57 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.13 1.34 8.14 -51.92 -0.42 0.92 16 32 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.11 2.09 5.83 -51.93 -0.30 1.79 16 34 H 0.11 2.19 6.73 -51.93 -0.35 1.84 16 35 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 311.21 15.07 4.69 4.69 Total: -1.00 -37.50 311.21 -8.99 -46.49 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.13 Total: 4.41 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: -1.42 Total: -24.38 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.35 Total: -35.07 kcal Atomic # 8 Polarization: -57.19 SS G_CDS: -1.94 Total: -59.14 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Atomic # 16 Polarization: 46.56 SS G_CDS: -0.50 Total: 46.05 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -37.50 -8.99 -46.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329585302.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.941 kcal (2) G-P(sol) polarization free energy of solvation -37.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds