Wall clock time and date at job start Wed Apr 15 2020 11:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00046 * 2 1 4 4 H 1.48497 * 109.46958 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46758 * 299.99295 * 3 2 1 6 6 H 1.48497 * 109.47542 * 59.99583 * 3 2 1 7 7 C 1.38951 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00093 * 198.26874 * 7 2 1 9 9 N 1.37096 * 120.00005 * 18.27384 * 7 2 1 10 10 C 1.34774 * 119.99971 * 44.46349 * 9 7 2 11 11 O 1.21295 * 120.00115 * 359.72618 * 10 9 7 12 12 C 1.50701 * 119.99918 * 179.73206 * 10 9 7 13 13 H 1.09004 * 109.55025 * 334.99456 * 12 10 9 14 14 C 1.53048 * 109.54725 * 214.80770 * 12 10 9 15 15 C 1.52591 * 109.98233 * 176.49328 * 14 12 10 16 16 C 1.52588 * 110.64127 * 69.98720 * 15 14 12 17 17 C 1.53034 * 109.98384 * 290.00648 * 16 15 14 18 18 S 1.81669 * 109.55343 * 95.19252 * 12 10 9 19 19 O 1.42103 * 108.66001 * 288.48180 * 18 12 10 20 20 O 1.42090 * 108.66427 * 59.82590 * 18 12 10 21 21 C 1.46498 * 119.99830 * 224.19378 * 9 7 2 22 22 C 1.53003 * 117.50049 * 3.57047 * 21 9 7 23 23 C 1.53002 * 117.49786 * 294.90869 * 21 9 7 24 24 H 0.97000 * 119.99965 * 354.95978 * 1 2 3 25 25 H 1.08999 * 109.37875 * 296.64781 * 14 12 10 26 26 H 1.08999 * 109.38568 * 56.33628 * 14 12 10 27 27 H 1.09000 * 109.23678 * 190.28112 * 15 14 12 28 28 H 1.08998 * 109.24463 * 309.68201 * 15 14 12 29 29 H 1.08996 * 109.38510 * 50.17227 * 16 15 14 30 30 H 1.09004 * 109.38066 * 169.85188 * 16 15 14 31 31 H 1.09008 * 109.54703 * 183.50452 * 17 16 15 32 32 H 1.08998 * 109.55386 * 303.70138 * 17 16 15 33 33 H 1.08999 * 115.55403 * 149.24456 * 21 9 7 34 34 H 1.08995 * 117.49425 * 0.02562 * 22 21 9 35 35 H 1.08994 * 117.49837 * 145.01961 * 22 21 9 36 36 H 1.08996 * 117.50377 * 214.97893 * 23 21 9 37 37 H 1.09004 * 117.49544 * 0.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2127 6 1 1.8894 2.3966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0481 -1.2268 0.2937 9 7 1.3753 -2.3609 -0.3712 10 6 0.5826 -2.3750 -1.4611 11 8 0.4258 -1.3625 -2.1103 12 6 -0.1091 -3.6489 -1.8733 13 1 0.4503 -4.5057 -1.4975 14 6 -0.1874 -3.7182 -3.4002 15 6 -0.8079 -5.0441 -3.8308 16 6 -2.2916 -5.0838 -3.4768 17 6 -2.4649 -5.1779 -1.9592 18 16 -1.7924 -3.6751 -1.1905 19 8 -1.7105 -3.8780 0.2135 20 8 -2.5040 -2.5522 -1.6921 21 6 1.5645 -3.5838 0.4129 22 6 2.4134 -3.4851 1.6819 23 6 2.9675 -4.1935 0.4432 24 1 -0.4850 0.8368 0.0738 25 1 -0.8001 -2.8954 -3.7686 26 1 0.8159 -3.6356 -3.8180 27 1 -0.6924 -5.1614 -4.9083 28 1 -0.2956 -5.8619 -3.3241 29 1 -2.7748 -4.1770 -3.8407 30 1 -2.7529 -5.9517 -3.9482 31 1 -3.5241 -5.2684 -1.7180 32 1 -1.9295 -6.0502 -1.5843 33 1 0.7174 -4.2696 0.4261 34 1 2.8307 -2.5102 1.9336 35 1 2.1250 -4.1061 2.5299 36 1 3.0434 -5.2803 0.4768 37 1 3.7497 -3.6844 -0.1200 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329585302.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:05 Heat of formation + Delta-G solvation = -95.281738 kcal Electronic energy + Delta-G solvation = -22606.750747 eV Core-core repulsion = 19283.696874 eV Total energy + Delta-G solvation = -3323.053873 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.67648 -38.49773 -37.79517 -37.35629 -36.97183 -34.90321 -33.25559 -32.44825 -29.16811 -27.02002 -24.77723 -23.20834 -22.93286 -21.87692 -21.40089 -19.72064 -18.80150 -18.01629 -17.62424 -17.47161 -16.80511 -16.51395 -16.23969 -15.60843 -15.42594 -15.06507 -14.84074 -14.57574 -14.28464 -14.09266 -13.55617 -13.18093 -13.07788 -13.03762 -12.95070 -12.83834 -12.63073 -12.40835 -12.28624 -12.17306 -12.08211 -11.76765 -11.72207 -11.46963 -11.31429 -10.99658 -10.78587 -10.10206 -9.08477 -8.27069 -6.07631 -1.02814 1.32085 1.39824 1.48952 1.73803 2.11823 2.30852 2.69453 2.90576 3.05915 3.08781 3.27546 3.57620 3.66616 3.76316 3.81258 4.01050 4.10603 4.16692 4.22828 4.38115 4.44006 4.60217 4.72168 4.86840 4.89703 4.98310 5.02268 5.16929 5.20446 5.24793 5.39442 5.41268 5.45468 6.10385 6.91539 7.05303 7.55136 8.18357 8.81219 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.019548 B = 0.007602 C = 0.006746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.003019 B = 3682.218234 C = 4149.606770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.013 3.987 3 Si 0.978 3.022 4 H -0.250 1.250 5 H -0.294 1.294 6 H -0.272 1.272 7 C -0.358 4.358 8 H 0.090 0.910 9 N -0.431 5.431 10 C 0.475 3.525 11 O -0.569 6.569 12 C -0.575 4.575 13 H 0.175 0.825 14 C -0.090 4.090 15 C -0.132 4.132 16 C -0.117 4.117 17 C -0.567 4.567 18 S 2.383 3.617 19 O -0.978 6.978 20 O -0.981 6.981 21 C 0.021 3.979 22 C -0.174 4.174 23 C -0.167 4.167 24 H 0.261 0.739 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.134 0.866 31 H 0.157 0.843 32 H 0.177 0.823 33 H 0.122 0.878 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.134 0.866 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.636 -17.916 -5.084 18.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.194 4.194 3 Si 0.802 3.198 4 H -0.173 1.173 5 H -0.221 1.221 6 H -0.198 1.198 7 C -0.486 4.486 8 H 0.108 0.892 9 N -0.151 5.151 10 C 0.261 3.739 11 O -0.449 6.449 12 C -0.687 4.687 13 H 0.192 0.808 14 C -0.129 4.129 15 C -0.169 4.169 16 C -0.155 4.155 17 C -0.701 4.701 18 S 2.570 3.430 19 O -0.975 6.975 20 O -0.978 6.978 21 C -0.084 4.084 22 C -0.211 4.211 23 C -0.205 4.205 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.101 0.899 27 H 0.130 0.870 28 H 0.125 0.875 29 H 0.086 0.914 30 H 0.152 0.848 31 H 0.175 0.825 32 H 0.195 0.805 33 H 0.139 0.861 34 H 0.103 0.897 35 H 0.135 0.865 36 H 0.152 0.848 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.263 -16.643 -4.842 17.379 hybrid contribution 0.463 1.203 -0.012 1.289 sum -0.801 -15.440 -4.854 16.204 Atomic orbital electron populations 1.69980 1.08401 1.28062 1.44257 1.26285 0.95534 1.03378 0.94166 0.85142 0.79375 0.78104 0.77168 1.17326 1.22096 1.19773 1.19296 0.95236 0.84784 1.49269 0.89217 1.43000 1.43008 1.08147 1.20994 1.19458 0.84438 0.88074 0.81897 1.90529 1.63748 1.35759 1.54884 1.30266 1.22820 1.05451 1.10150 0.80800 1.21226 1.04126 1.00285 0.87215 1.21797 0.94469 0.95447 1.05152 1.21503 0.98071 1.06102 0.89862 1.30104 1.14369 1.17164 1.08488 1.09096 0.78353 0.79676 0.75883 1.93492 1.86343 1.87362 1.30314 1.93502 1.70664 1.51704 1.81908 1.22168 0.95620 0.90947 0.99623 1.23168 1.03292 1.02549 0.92086 1.23406 0.95590 1.00980 1.00537 0.92944 0.92469 0.89898 0.87000 0.87472 0.91396 0.84809 0.82500 0.80483 0.86078 0.89687 0.86542 0.84837 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -57.44 11.75 21.66 0.25 -57.18 16 2 C 0.01 0.77 4.38 84.93 0.37 1.14 16 3 Si 0.98 47.72 29.59 68.60 2.03 49.75 16 4 H -0.25 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.29 -14.92 7.11 99.48 0.71 -14.22 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.36 -20.53 7.91 84.04 0.66 -19.87 16 8 H 0.09 4.84 7.27 -2.91 -0.02 4.82 16 9 N -0.43 -22.71 2.83 -613.13 -1.74 -24.45 16 10 C 0.47 25.27 5.97 87.66 0.52 25.79 16 11 O -0.57 -36.02 14.11 -3.08 -0.04 -36.07 16 12 C -0.58 -21.48 2.07 29.86 0.06 -21.42 16 13 H 0.17 4.88 6.40 -2.39 -0.02 4.87 16 14 C -0.09 -2.72 4.62 30.47 0.14 -2.58 16 15 C -0.13 -2.15 5.63 30.32 0.17 -1.98 16 16 C -0.12 -1.88 5.73 30.47 0.17 -1.70 16 17 C -0.57 -10.66 6.34 71.99 0.46 -10.21 16 18 S 2.38 91.40 4.67 -56.49 -0.26 91.14 16 19 O -0.98 -43.58 17.06 -127.40 -2.17 -45.75 16 20 O -0.98 -49.01 17.94 -127.40 -2.29 -51.30 16 21 C 0.02 0.86 5.45 44.99 0.25 1.11 16 22 C -0.17 -6.25 9.80 30.62 0.30 -5.95 16 23 C -0.17 -5.17 10.36 30.62 0.32 -4.85 16 24 H 0.26 16.64 8.32 -92.71 -0.77 15.87 16 25 H 0.06 2.11 7.85 -2.39 -0.02 2.09 16 26 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.11 1.10 8.09 -2.39 -0.02 1.08 16 29 H 0.07 1.38 8.02 -2.39 -0.02 1.36 16 30 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.16 2.32 8.14 -2.38 -0.02 2.31 16 32 H 0.18 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.12 4.53 5.83 -2.39 -0.01 4.51 16 34 H 0.08 3.47 6.73 -2.39 -0.02 3.45 16 35 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16 36 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.08 2.75 8.14 -2.38 -0.02 2.73 16 Total: -1.00 -95.25 311.21 0.28 -94.97 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 1.07 Total: 19.41 kcal Atomic # 6 Polarization: -43.95 SS G_CDS: 3.43 Total: -40.52 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -1.48 Total: -81.64 kcal Atomic # 8 Polarization: -128.61 SS G_CDS: -4.50 Total: -133.12 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.75 kcal Atomic # 16 Polarization: 91.40 SS G_CDS: -0.26 Total: 91.14 kcal Total: -95.25 0.28 -94.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329585302.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.309 kcal (2) G-P(sol) polarization free energy of solvation -95.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds