Wall clock time and date at job start Wed Apr 15 2020 11:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 120.00099 * 2 1 4 4 H 1.48505 * 109.46983 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47280 * 119.99729 * 3 2 1 6 6 H 1.48502 * 109.47580 * 240.00089 * 3 2 1 7 7 C 1.38946 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00121 * 198.33123 * 7 2 1 9 9 N 1.37100 * 120.00241 * 18.31877 * 7 2 1 10 10 C 1.34780 * 119.99564 * 44.31812 * 9 7 2 11 11 O 1.21291 * 120.00020 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99813 * 179.97438 * 10 9 7 13 13 H 1.09006 * 109.54933 * 29.81345 * 12 10 9 14 14 C 1.53038 * 109.54799 * 150.00224 * 12 10 9 15 15 C 1.52591 * 109.98508 * 183.50612 * 14 12 10 16 16 C 1.52592 * 110.64075 * 290.01198 * 15 14 12 17 17 C 1.53033 * 109.98393 * 69.99014 * 16 15 14 18 18 S 1.81665 * 109.55342 * 269.51972 * 12 10 9 19 19 O 1.42103 * 108.66236 * 300.17724 * 18 12 10 20 20 O 1.42102 * 108.66289 * 71.51983 * 18 12 10 21 21 C 1.46495 * 120.00107 * 224.31865 * 9 7 2 22 22 C 1.52995 * 117.50374 * 3.30407 * 21 9 7 23 23 C 1.52992 * 117.50096 * 294.67919 * 21 9 7 24 24 H 0.97000 * 120.00253 * 354.93589 * 1 2 3 25 25 H 1.08995 * 109.38377 * 303.66288 * 14 12 10 26 26 H 1.08996 * 109.38233 * 63.35146 * 14 12 10 27 27 H 1.08992 * 109.24431 * 50.31368 * 15 14 12 28 28 H 1.09004 * 109.24319 * 169.71395 * 15 14 12 29 29 H 1.09007 * 109.38103 * 190.14403 * 16 15 14 30 30 H 1.08994 * 109.38685 * 309.82588 * 16 15 14 31 31 H 1.09000 * 109.55099 * 56.20557 * 17 16 15 32 32 H 1.09006 * 109.54929 * 176.39802 * 17 16 15 33 33 H 1.09011 * 115.54677 * 149.01266 * 21 9 7 34 34 H 1.09005 * 117.49473 * 0.02562 * 22 21 9 35 35 H 1.09004 * 117.50398 * 145.01482 * 22 21 9 36 36 H 1.09001 * 117.49789 * 214.97962 * 23 21 9 37 37 H 1.08992 * 117.50198 * 0.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2831 2.7464 -0.0006 5 1 3.1018 1.6964 1.2125 6 1 3.1019 1.6965 -1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0478 -1.2272 0.2936 9 7 1.3756 -2.3604 -0.3742 10 6 0.5813 -2.3724 -1.4631 11 8 0.4272 -1.3597 -2.1125 12 6 -0.1144 -3.6444 -1.8742 13 1 -0.3145 -4.2523 -0.9918 14 6 -1.4335 -3.3042 -2.5716 15 6 -2.1876 -4.5856 -2.9148 16 6 -1.4753 -5.3469 -4.0290 17 6 -0.1613 -5.9314 -3.5059 18 16 0.9420 -4.5701 -3.0262 19 8 1.1884 -3.7606 -4.1679 20 8 2.0406 -5.1085 -2.3033 21 6 1.5621 -3.5837 0.4099 22 6 2.4130 -3.4873 1.6778 23 6 2.9633 -4.1972 0.4393 24 1 -0.4850 0.8367 0.0741 25 1 -2.0448 -2.6908 -1.9098 26 1 -1.2262 -2.7501 -3.4871 27 1 -2.2451 -5.2169 -2.0282 28 1 -3.1964 -4.3324 -3.2407 29 1 -2.1159 -6.1553 -4.3816 30 1 -1.2656 -4.6671 -4.8549 31 1 -0.3617 -6.5612 -2.6392 32 1 0.3101 -6.5266 -4.2881 33 1 0.7130 -4.2671 0.4240 34 1 2.8337 -2.5135 1.9287 35 1 2.1238 -4.1072 2.5265 36 1 3.0362 -5.2842 0.4731 37 1 3.7465 -3.6905 -0.1245 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329585303.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:08 Heat of formation + Delta-G solvation = -64.144631 kcal Electronic energy + Delta-G solvation = -22593.541821 eV Core-core repulsion = 19271.838154 eV Total energy + Delta-G solvation = -3321.703667 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.88136 -37.16745 -36.26057 -35.89673 -35.55203 -32.95754 -31.66435 -30.78046 -27.89982 -25.22571 -23.43368 -21.57834 -21.26630 -20.82033 -19.67604 -18.33254 -17.11259 -16.27420 -16.17164 -16.03895 -15.26555 -14.87534 -14.68231 -14.18127 -13.96580 -13.63081 -13.45490 -13.06789 -12.86286 -12.56161 -11.99958 -11.67252 -11.58442 -11.52681 -11.40676 -11.25204 -11.04793 -10.90167 -10.82244 -10.70266 -10.66657 -10.34258 -10.19811 -9.91731 -9.81978 -9.59569 -8.75343 -8.18087 -7.10122 -6.19426 -3.93969 0.28952 3.02741 3.28641 3.36097 3.41230 3.87183 4.00752 4.16396 4.31797 4.57714 4.62918 4.77796 4.81419 4.94223 4.98356 5.09929 5.22522 5.38694 5.41377 5.57296 5.61591 5.74218 5.80420 5.83595 5.91598 6.00777 6.09625 6.28268 6.39487 6.54270 6.57525 6.84520 6.99903 7.56149 8.18103 8.93315 9.02397 9.53563 10.13030 10.88887 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.020314 B = 0.007488 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.057401 B = 3738.275518 C = 4334.824021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.285 1.285 5 H -0.276 1.276 6 H -0.271 1.271 7 C -0.345 4.345 8 H 0.084 0.916 9 N -0.411 5.411 10 C 0.490 3.510 11 O -0.510 6.510 12 C -0.576 4.576 13 H 0.138 0.862 14 C -0.089 4.089 15 C -0.139 4.139 16 C -0.110 4.110 17 C -0.614 4.614 18 S 2.415 3.585 19 O -0.927 6.927 20 O -0.929 6.929 21 C 0.058 3.942 22 C -0.177 4.177 23 C -0.179 4.179 24 H 0.267 0.733 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.940 -12.541 -2.278 13.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.139 4.139 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.473 4.473 8 H 0.102 0.898 9 N -0.132 5.132 10 C 0.274 3.726 11 O -0.386 6.386 12 C -0.689 4.689 13 H 0.155 0.845 14 C -0.128 4.128 15 C -0.177 4.177 16 C -0.148 4.148 17 C -0.742 4.742 18 S 2.595 3.405 19 O -0.924 6.924 20 O -0.926 6.926 21 C -0.047 4.047 22 C -0.215 4.215 23 C -0.218 4.218 24 H 0.077 0.923 25 H 0.109 0.891 26 H 0.107 0.893 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.148 0.852 32 H 0.146 0.854 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.340 -11.719 -2.976 12.544 hybrid contribution -0.566 0.338 0.547 0.856 sum -3.906 -11.381 -2.429 12.276 Atomic orbital electron populations 1.69811 1.06637 1.27838 1.41787 1.25292 0.94939 0.99622 0.94092 0.86201 0.79342 0.81398 0.78725 1.21056 1.20183 1.19647 1.18953 0.94894 0.83595 1.49822 0.89821 1.42732 1.43001 1.07240 1.20225 1.18440 0.84425 0.86891 0.82847 1.90573 1.62167 1.32762 1.53130 1.30261 1.11659 1.11833 1.15150 0.84454 1.21128 0.92286 0.97356 1.02031 1.21759 1.00489 0.96812 0.98634 1.21286 0.93612 1.00654 0.99235 1.30370 1.13228 1.19135 1.11460 1.08583 0.77299 0.77469 0.77106 1.93570 1.83410 1.66650 1.48741 1.93577 1.47166 1.78776 1.73066 1.21784 0.93548 0.91319 0.98079 1.23146 1.04443 1.02751 0.91117 1.23185 0.98531 0.99005 1.01115 0.92309 0.89110 0.89263 0.91034 0.89872 0.90017 0.89790 0.85229 0.85362 0.88266 0.87459 0.89764 0.89229 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.11 11.75 55.50 0.65 -23.46 16 2 C 0.07 2.02 4.38 -17.47 -0.08 1.94 16 3 Si 0.92 22.00 29.59 -169.99 -5.03 16.97 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.35 -9.53 7.91 -14.93 -0.12 -9.65 16 8 H 0.08 2.22 7.26 -52.48 -0.38 1.84 16 9 N -0.41 -10.48 2.83 -107.74 -0.31 -10.79 16 10 C 0.49 12.48 6.02 -10.99 -0.07 12.41 16 11 O -0.51 -15.10 14.02 5.55 0.08 -15.02 16 12 C -0.58 -10.76 2.24 -27.87 -0.06 -10.82 16 13 H 0.14 2.14 6.01 -51.92 -0.31 1.82 16 14 C -0.09 -1.47 4.55 -26.92 -0.12 -1.59 16 15 C -0.14 -1.56 5.63 -27.15 -0.15 -1.71 16 16 C -0.11 -1.15 5.73 -26.92 -0.15 -1.31 16 17 C -0.61 -6.83 6.35 37.17 0.24 -6.59 16 18 S 2.42 41.90 4.67 -107.50 -0.50 41.40 16 19 O -0.93 -19.75 17.92 -57.81 -1.04 -20.78 16 20 O -0.93 -17.69 16.84 -57.81 -0.97 -18.66 16 21 C 0.06 1.21 5.56 -67.94 -0.38 0.83 16 22 C -0.18 -3.28 9.80 -26.74 -0.26 -3.54 16 23 C -0.18 -3.36 9.44 -26.74 -0.25 -3.62 16 24 H 0.27 7.43 8.32 -40.82 -0.34 7.09 16 25 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 26 H 0.09 1.60 7.84 -51.93 -0.41 1.19 16 27 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.94 8.01 -51.93 -0.42 0.52 16 31 H 0.13 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.13 1.19 8.14 -51.92 -0.42 0.77 16 33 H 0.10 1.77 6.25 -51.92 -0.32 1.44 16 34 H 0.11 2.16 6.73 -51.93 -0.35 1.81 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.09 1.89 8.14 -51.93 -0.42 1.46 16 LS Contribution 310.20 15.07 4.67 4.67 Total: -1.00 -36.25 310.20 -8.98 -45.23 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -5.13 Total: 4.09 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: -1.41 Total: -23.64 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.35 Total: -34.25 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: -1.93 Total: -54.47 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Atomic # 16 Polarization: 41.90 SS G_CDS: -0.50 Total: 41.40 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -36.25 -8.98 -45.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329585303.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.919 kcal (2) G-P(sol) polarization free energy of solvation -36.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds