Wall clock time and date at job start Wed Apr 15 2020 11:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 120.00099 * 2 1 4 4 H 1.48505 * 109.46983 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47280 * 119.99729 * 3 2 1 6 6 H 1.48502 * 109.47580 * 240.00089 * 3 2 1 7 7 C 1.38946 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00121 * 198.33123 * 7 2 1 9 9 N 1.37100 * 120.00241 * 18.31877 * 7 2 1 10 10 C 1.34780 * 119.99564 * 44.31812 * 9 7 2 11 11 O 1.21291 * 120.00020 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99813 * 179.97438 * 10 9 7 13 13 H 1.09006 * 109.54933 * 29.81345 * 12 10 9 14 14 C 1.53038 * 109.54799 * 150.00224 * 12 10 9 15 15 C 1.52591 * 109.98508 * 183.50612 * 14 12 10 16 16 C 1.52592 * 110.64075 * 290.01198 * 15 14 12 17 17 C 1.53033 * 109.98393 * 69.99014 * 16 15 14 18 18 S 1.81665 * 109.55342 * 269.51972 * 12 10 9 19 19 O 1.42103 * 108.66236 * 300.17724 * 18 12 10 20 20 O 1.42102 * 108.66289 * 71.51983 * 18 12 10 21 21 C 1.46495 * 120.00107 * 224.31865 * 9 7 2 22 22 C 1.52995 * 117.50374 * 3.30407 * 21 9 7 23 23 C 1.52992 * 117.50096 * 294.67919 * 21 9 7 24 24 H 0.97000 * 120.00253 * 354.93589 * 1 2 3 25 25 H 1.08995 * 109.38377 * 303.66288 * 14 12 10 26 26 H 1.08996 * 109.38233 * 63.35146 * 14 12 10 27 27 H 1.08992 * 109.24431 * 50.31368 * 15 14 12 28 28 H 1.09004 * 109.24319 * 169.71395 * 15 14 12 29 29 H 1.09007 * 109.38103 * 190.14403 * 16 15 14 30 30 H 1.08994 * 109.38685 * 309.82588 * 16 15 14 31 31 H 1.09000 * 109.55099 * 56.20557 * 17 16 15 32 32 H 1.09006 * 109.54929 * 176.39802 * 17 16 15 33 33 H 1.09011 * 115.54677 * 149.01266 * 21 9 7 34 34 H 1.09005 * 117.49473 * 0.02562 * 22 21 9 35 35 H 1.09004 * 117.50398 * 145.01482 * 22 21 9 36 36 H 1.09001 * 117.49789 * 214.97962 * 23 21 9 37 37 H 1.08992 * 117.50198 * 0.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2831 2.7464 -0.0006 5 1 3.1018 1.6964 1.2125 6 1 3.1019 1.6965 -1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0478 -1.2272 0.2936 9 7 1.3756 -2.3604 -0.3742 10 6 0.5813 -2.3724 -1.4631 11 8 0.4272 -1.3597 -2.1125 12 6 -0.1144 -3.6444 -1.8742 13 1 -0.3145 -4.2523 -0.9918 14 6 -1.4335 -3.3042 -2.5716 15 6 -2.1876 -4.5856 -2.9148 16 6 -1.4753 -5.3469 -4.0290 17 6 -0.1613 -5.9314 -3.5059 18 16 0.9420 -4.5701 -3.0262 19 8 1.1884 -3.7606 -4.1679 20 8 2.0406 -5.1085 -2.3033 21 6 1.5621 -3.5837 0.4099 22 6 2.4130 -3.4873 1.6778 23 6 2.9633 -4.1972 0.4393 24 1 -0.4850 0.8367 0.0741 25 1 -2.0448 -2.6908 -1.9098 26 1 -1.2262 -2.7501 -3.4871 27 1 -2.2451 -5.2169 -2.0282 28 1 -3.1964 -4.3324 -3.2407 29 1 -2.1159 -6.1553 -4.3816 30 1 -1.2656 -4.6671 -4.8549 31 1 -0.3617 -6.5612 -2.6392 32 1 0.3101 -6.5266 -4.2881 33 1 0.7130 -4.2671 0.4240 34 1 2.8337 -2.5135 1.9287 35 1 2.1238 -4.1072 2.5265 36 1 3.0362 -5.2842 0.4731 37 1 3.7465 -3.6905 -0.1245 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329585303.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:08 Heat of formation + Delta-G solvation = -92.215138 kcal Electronic energy + Delta-G solvation = -22594.759050 eV Core-core repulsion = 19271.838154 eV Total energy + Delta-G solvation = -3322.920895 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.66549 -38.49651 -37.75795 -37.35302 -36.96920 -34.89637 -33.24618 -32.43614 -29.15712 -27.00918 -24.77493 -23.13306 -22.88685 -21.87093 -21.43361 -19.70863 -18.78585 -17.96356 -17.67921 -17.41428 -16.88992 -16.51100 -16.12658 -15.57638 -15.50493 -14.99469 -14.83275 -14.57951 -14.28558 -14.03487 -13.58981 -13.16450 -13.04158 -13.01181 -12.93426 -12.85022 -12.61800 -12.47076 -12.26429 -12.18712 -12.10241 -11.75758 -11.67749 -11.46325 -11.26763 -11.01287 -10.72706 -10.11017 -9.06124 -8.28913 -6.07815 -0.99801 1.30892 1.41188 1.44365 1.72271 2.13066 2.30552 2.63421 2.92471 3.07414 3.08887 3.33424 3.59428 3.65529 3.78373 3.82568 3.96051 4.13934 4.20601 4.27514 4.38882 4.45725 4.60339 4.71693 4.89705 4.94977 5.01656 5.06212 5.18581 5.22335 5.28237 5.38719 5.41821 5.49844 6.12029 6.91325 7.04891 7.55938 8.18728 8.79146 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.020314 B = 0.007488 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.057401 B = 3738.275518 C = 4334.824021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.023 3.977 3 Si 0.970 3.030 4 H -0.281 1.281 5 H -0.251 1.251 6 H -0.285 1.285 7 C -0.366 4.366 8 H 0.080 0.920 9 N -0.432 5.432 10 C 0.473 3.527 11 O -0.572 6.572 12 C -0.581 4.581 13 H 0.169 0.831 14 C -0.088 4.088 15 C -0.132 4.132 16 C -0.117 4.117 17 C -0.564 4.564 18 S 2.398 3.602 19 O -0.984 6.984 20 O -0.954 6.954 21 C 0.030 3.970 22 C -0.166 4.166 23 C -0.167 4.167 24 H 0.263 0.737 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.132 0.868 30 H 0.070 0.930 31 H 0.177 0.823 32 H 0.163 0.837 33 H 0.132 0.868 34 H 0.083 0.917 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.246 -16.755 -1.990 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.184 4.184 3 Si 0.794 3.206 4 H -0.207 1.207 5 H -0.175 1.175 6 H -0.211 1.211 7 C -0.493 4.493 8 H 0.098 0.902 9 N -0.152 5.152 10 C 0.260 3.740 11 O -0.453 6.453 12 C -0.691 4.691 13 H 0.187 0.813 14 C -0.127 4.127 15 C -0.169 4.169 16 C -0.155 4.155 17 C -0.699 4.699 18 S 2.583 3.417 19 O -0.981 6.981 20 O -0.951 6.951 21 C -0.075 4.075 22 C -0.203 4.203 23 C -0.205 4.205 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.150 0.850 30 H 0.088 0.912 31 H 0.195 0.805 32 H 0.181 0.819 33 H 0.149 0.851 34 H 0.101 0.899 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.586 -15.886 -2.605 16.738 hybrid contribution -0.166 1.477 0.366 1.531 sum -4.752 -14.409 -2.239 15.336 Atomic orbital electron populations 1.69905 1.07853 1.27982 1.43954 1.26083 0.95701 1.02637 0.93979 0.85381 0.78329 0.77983 0.78886 1.20666 1.17526 1.21148 1.19164 0.95142 0.85258 1.49741 0.90219 1.42993 1.42994 1.08164 1.21037 1.19533 0.83818 0.88648 0.82007 1.90512 1.64157 1.35797 1.54825 1.30342 1.12316 1.09017 1.17376 0.81349 1.21146 0.91573 1.00195 0.99805 1.21788 1.00558 0.94118 1.00463 1.21481 0.93667 1.01858 0.98484 1.30059 1.10786 1.14613 1.14401 1.08714 0.78329 0.78888 0.75811 1.93506 1.84976 1.69842 1.49815 1.93534 1.49481 1.78740 1.73375 1.22175 0.95674 0.90372 0.99233 1.23210 1.02982 1.02288 0.91843 1.23160 0.96324 1.00512 1.00527 0.92808 0.91698 0.92366 0.87841 0.87698 0.84958 0.91160 0.80531 0.81934 0.85069 0.89892 0.85731 0.85894 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -53.02 11.75 21.66 0.25 -52.77 16 2 C 0.02 1.37 4.38 84.93 0.37 1.74 16 3 Si 0.97 47.27 29.59 68.60 2.03 49.30 16 4 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.25 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 7 C -0.37 -21.19 7.91 84.04 0.67 -20.53 16 8 H 0.08 4.48 7.26 -2.91 -0.02 4.46 16 9 N -0.43 -22.80 2.83 -613.15 -1.74 -24.54 16 10 C 0.47 25.21 6.02 87.65 0.53 25.74 16 11 O -0.57 -36.38 14.02 -3.06 -0.04 -36.42 16 12 C -0.58 -21.50 2.24 29.86 0.07 -21.43 16 13 H 0.17 4.86 6.01 -2.38 -0.01 4.84 16 14 C -0.09 -2.90 4.55 30.47 0.14 -2.76 16 15 C -0.13 -2.37 5.63 30.32 0.17 -2.20 16 16 C -0.12 -1.78 5.73 30.47 0.17 -1.61 16 17 C -0.56 -9.05 6.35 71.99 0.46 -8.59 16 18 S 2.40 80.13 4.67 -56.49 -0.26 79.87 16 19 O -0.98 -43.32 17.92 -127.40 -2.28 -45.60 16 20 O -0.95 -35.05 16.84 -127.40 -2.15 -37.20 16 21 C 0.03 1.22 5.56 44.99 0.25 1.47 16 22 C -0.17 -5.94 9.80 30.59 0.30 -5.64 16 23 C -0.17 -6.06 9.44 30.59 0.29 -5.77 16 24 H 0.26 15.48 8.32 -92.71 -0.77 14.71 16 25 H 0.06 2.39 8.14 -2.39 -0.02 2.38 16 26 H 0.06 2.22 7.84 -2.39 -0.02 2.20 16 27 H 0.10 1.27 8.09 -2.39 -0.02 1.25 16 28 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.13 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.07 1.34 8.01 -2.39 -0.02 1.32 16 31 H 0.18 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.16 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.13 4.34 6.25 -2.38 -0.01 4.33 16 34 H 0.08 3.39 6.73 -2.38 -0.02 3.37 16 35 H 0.12 3.42 8.14 -2.39 -0.02 3.40 16 36 H 0.12 3.62 8.14 -2.39 -0.02 3.60 16 37 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -89.73 310.20 0.29 -89.43 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 1.07 Total: 17.51 kcal Atomic # 6 Polarization: -42.99 SS G_CDS: 3.41 Total: -39.58 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -1.48 Total: -77.30 kcal Atomic # 8 Polarization: -114.75 SS G_CDS: -4.47 Total: -119.22 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Atomic # 16 Polarization: 80.13 SS G_CDS: -0.26 Total: 79.87 kcal Total: -89.73 0.29 -89.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329585303.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.785 kcal (2) G-P(sol) polarization free energy of solvation -89.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds