Wall clock time and date at job start Wed Apr 15 2020 11:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99685 * 2 1 4 4 H 1.48492 * 109.47186 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47040 * 300.00671 * 3 2 1 6 6 H 1.48499 * 109.46813 * 60.00242 * 3 2 1 7 7 C 1.37871 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00294 * 174.22528 * 7 2 1 9 9 C 1.50700 * 120.00102 * 354.23010 * 7 2 1 10 10 C 1.52999 * 115.56102 * 80.46240 * 9 7 2 11 11 N 1.46501 * 109.47279 * 39.98082 * 10 9 7 12 12 C 1.34778 * 120.00256 * 186.35341 * 11 10 9 13 13 O 1.21284 * 119.99634 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00091 * 179.97438 * 12 11 10 15 15 H 1.09000 * 109.64067 * 300.42423 * 14 12 11 16 16 C 1.53876 * 109.64498 * 179.97438 * 14 12 11 17 17 C 1.55053 * 106.62116 * 192.96458 * 16 14 12 18 18 S 1.83292 * 102.56594 * 42.43425 * 17 16 14 19 19 O 1.42099 * 109.35638 * 90.18644 * 18 17 16 20 20 O 1.42103 * 109.34935 * 223.38743 * 18 17 16 21 21 C 1.54163 * 109.64841 * 60.72068 * 14 12 11 22 22 C 1.52999 * 117.49641 * 294.78091 * 9 7 2 23 23 C 1.53003 * 60.02864 * 252.51718 * 22 9 7 24 24 H 0.96997 * 120.00302 * 5.01809 * 1 2 3 25 25 H 1.09004 * 109.47167 * 159.97311 * 10 9 7 26 26 H 1.08995 * 109.47704 * 279.97242 * 10 9 7 27 27 H 0.96999 * 120.00009 * 6.34530 * 11 10 9 28 28 H 1.08994 * 110.02534 * 312.25312 * 16 14 12 29 29 H 1.08998 * 110.03047 * 73.62741 * 16 14 12 30 30 H 1.08999 * 110.79024 * 160.70117 * 17 16 14 31 31 H 1.09000 * 110.78953 * 283.97510 * 17 16 14 32 32 H 1.08997 * 110.31845 * 266.66790 * 21 14 12 33 33 H 1.09003 * 110.32091 * 28.85941 * 21 14 12 34 34 H 1.09002 * 117.50096 * 145.02520 * 22 9 7 35 35 H 1.09000 * 117.50186 * 0.02562 * 22 9 7 36 36 H 1.09003 * 117.49509 * 107.47731 * 23 22 9 37 37 H 1.08999 * 117.50104 * 252.46876 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8901 2.3966 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0804 -1.1963 -0.0946 9 6 1.2569 -2.4959 0.1301 10 6 0.6133 -3.0194 -1.1554 11 7 1.5202 -2.7921 -2.2833 12 6 1.1120 -3.0566 -3.5403 13 8 -0.0060 -3.4832 -3.7376 14 6 2.0448 -2.8222 -4.7004 15 1 2.3365 -1.7724 -4.7297 16 6 1.3405 -3.2009 -6.0151 17 6 2.4397 -3.2556 -7.1073 18 16 3.8128 -4.1138 -6.2484 19 8 3.6924 -5.5151 -6.4509 20 8 5.0374 -3.4564 -6.5446 21 6 3.3007 -3.7021 -4.5417 22 6 0.5223 -2.7596 1.4460 23 6 1.8038 -3.5288 1.1185 24 1 -0.4850 0.8368 -0.0735 25 1 0.4185 -4.0872 -1.0555 26 1 -0.3251 -2.4939 -1.3322 27 1 2.4145 -2.4512 -2.1255 28 1 0.8640 -4.1761 -5.9158 29 1 0.5965 -2.4464 -6.2708 30 1 2.1013 -3.8323 -7.9681 31 1 2.7358 -2.2509 -7.4089 32 1 4.0895 -3.1476 -4.0335 33 1 3.0593 -4.6103 -3.9895 34 1 -0.4194 -3.3063 1.3960 35 1 0.5794 -1.9914 2.2171 36 1 2.7041 -3.2662 1.6740 37 1 1.7052 -4.5814 0.8535 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404173121.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:10 Heat of formation + Delta-G solvation = -90.635994 kcal Electronic energy + Delta-G solvation = -21134.299148 eV Core-core repulsion = 17811.446729 eV Total energy + Delta-G solvation = -3322.852418 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.57901 -37.18707 -36.93975 -36.19077 -35.60521 -33.41580 -32.12680 -30.32564 -26.74641 -25.74565 -25.10638 -22.15716 -21.24596 -19.76468 -19.27486 -18.99177 -17.36718 -17.04324 -16.24689 -16.08113 -15.78780 -15.00049 -14.95296 -14.70648 -14.24239 -14.02369 -13.70128 -13.22692 -12.87410 -12.48774 -12.36315 -12.30470 -12.16171 -12.11553 -11.86009 -11.69233 -11.34140 -11.12678 -11.02387 -10.93533 -10.61782 -10.51804 -10.33244 -9.77204 -9.36020 -9.03492 -8.63949 -8.46078 -8.05040 -6.20112 -4.30127 -0.12833 2.32258 2.98993 3.15174 3.25850 3.27014 3.44096 3.60644 3.93293 4.23838 4.28148 4.38387 4.51680 4.65543 4.79256 5.07028 5.16414 5.23325 5.33469 5.41093 5.55701 5.75932 5.89794 5.95145 6.20494 6.39083 6.45453 6.62494 6.80861 6.99621 7.16044 7.29041 7.38034 7.69067 8.21776 8.23842 8.72389 8.78955 9.38046 10.87636 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.019469 B = 0.004714 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.823431 B = 5937.892142 C = 6382.425932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.077 3.923 3 Si 0.888 3.112 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.505 4.505 8 H 0.062 0.938 9 C 0.027 3.973 10 C 0.163 3.837 11 N -0.687 5.687 12 C 0.514 3.486 13 O -0.555 6.555 14 C -0.105 4.105 15 H 0.118 0.882 16 C -0.101 4.101 17 C -0.586 4.586 18 S 2.391 3.609 19 O -0.937 6.937 20 O -0.940 6.940 21 C -0.588 4.588 22 C -0.155 4.155 23 C -0.210 4.210 24 H 0.262 0.738 25 H 0.036 0.964 26 H 0.073 0.927 27 H 0.405 0.595 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.148 0.852 33 H 0.143 0.857 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.737 -4.518 -10.408 12.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.128 4.128 3 Si 0.715 3.285 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.027 3.973 10 C 0.039 3.961 11 N -0.335 5.335 12 C 0.297 3.703 13 O -0.434 6.434 14 C -0.127 4.127 15 H 0.136 0.864 16 C -0.139 4.139 17 C -0.716 4.716 18 S 2.575 3.425 19 O -0.934 6.934 20 O -0.937 6.937 21 C -0.717 4.717 22 C -0.193 4.193 23 C -0.247 4.247 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.091 0.909 27 H 0.241 0.759 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.166 0.834 33 H 0.161 0.839 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.565 -5.216 -10.785 12.821 hybrid contribution 0.115 1.713 0.570 1.809 sum 4.679 -3.504 -10.215 11.769 Atomic orbital electron populations 1.69974 1.05953 1.26957 1.47594 1.24986 0.94755 0.98943 0.94109 0.86612 0.80236 0.83818 0.77807 1.19589 1.20991 1.20848 1.20341 0.92728 0.88482 1.52711 0.92023 1.19070 0.98047 0.93761 0.86468 1.20906 0.93104 0.96732 0.85323 1.45910 1.18637 1.63650 1.05316 1.19900 0.87448 0.78864 0.84075 1.90674 1.20779 1.46914 1.85066 1.21739 0.93291 1.02075 0.95627 0.86392 1.22040 0.97006 1.06296 0.88601 1.30639 1.16495 1.14728 1.09770 1.09032 0.77383 0.76331 0.79792 1.93622 1.87182 1.28417 1.84197 1.93614 1.40717 1.76738 1.82672 1.30580 1.06914 1.10467 1.23771 1.22538 0.93079 1.01569 1.02142 1.23082 0.98085 0.95631 1.07941 0.92796 0.94604 0.90866 0.75900 0.88334 0.87826 0.84312 0.84341 0.83357 0.83898 0.91635 0.89964 0.90353 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.03 13.11 55.43 0.73 -22.30 16 2 C 0.08 1.93 5.42 -17.82 -0.10 1.83 16 3 Si 0.89 19.44 29.55 -169.99 -5.02 14.42 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.51 -12.11 7.51 -34.44 -0.26 -12.37 16 8 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 9 C 0.03 0.61 1.63 -155.63 -0.25 0.35 16 10 C 0.16 3.46 5.76 -4.04 -0.02 3.44 16 11 N -0.69 -12.53 5.19 -60.29 -0.31 -12.84 16 12 C 0.51 8.67 7.00 -10.99 -0.08 8.59 16 13 O -0.55 -11.23 15.78 5.55 0.09 -11.15 16 14 C -0.10 -1.20 2.95 -90.71 -0.27 -1.47 16 15 H 0.12 1.13 8.14 -51.93 -0.42 0.70 16 16 C -0.10 -1.00 5.27 -25.19 -0.13 -1.13 16 17 C -0.59 -4.29 7.31 38.24 0.28 -4.01 16 18 S 2.39 23.04 6.10 -107.50 -0.66 22.38 16 19 O -0.94 -12.37 18.14 -57.71 -1.05 -13.42 16 20 O -0.94 -11.94 18.15 -57.71 -1.05 -12.98 16 21 C -0.59 -5.60 6.60 37.77 0.25 -5.35 16 22 C -0.16 -3.38 9.71 -26.73 -0.26 -3.64 16 23 C -0.21 -4.17 9.88 -26.70 -0.26 -4.44 16 24 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 25 H 0.04 0.73 7.95 -51.93 -0.41 0.32 16 26 H 0.07 1.79 8.12 -51.93 -0.42 1.37 16 27 H 0.41 6.84 7.53 -40.82 -0.31 6.53 16 28 H 0.10 1.05 7.72 -51.93 -0.40 0.65 16 29 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.14 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.14 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.15 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.14 1.37 7.88 -51.93 -0.41 0.96 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.08 1.91 8.14 -51.93 -0.42 1.48 16 36 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 LS Contribution 324.93 15.07 4.90 4.90 Total: -1.00 -33.28 324.93 -8.78 -42.06 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -5.30 Total: 7.14 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -1.10 Total: -18.20 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.41 Total: -35.15 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -2.01 Total: -37.55 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Atomic # 16 Polarization: 23.04 SS G_CDS: -0.66 Total: 22.38 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.28 -8.78 -42.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404173121.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.580 kcal (2) G-P(sol) polarization free energy of solvation -33.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds