Wall clock time and date at job start Wed Apr 15 2020 11:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99685 * 2 1 4 4 H 1.48492 * 109.47186 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47040 * 300.00671 * 3 2 1 6 6 H 1.48499 * 109.46813 * 60.00242 * 3 2 1 7 7 C 1.37871 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00294 * 174.22528 * 7 2 1 9 9 C 1.50700 * 120.00102 * 354.23010 * 7 2 1 10 10 C 1.52999 * 115.56102 * 80.46240 * 9 7 2 11 11 N 1.46501 * 109.47279 * 39.98082 * 10 9 7 12 12 C 1.34778 * 120.00256 * 186.35341 * 11 10 9 13 13 O 1.21284 * 119.99634 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00091 * 179.97438 * 12 11 10 15 15 H 1.09000 * 109.64067 * 300.42423 * 14 12 11 16 16 C 1.53876 * 109.64498 * 179.97438 * 14 12 11 17 17 C 1.55053 * 106.62116 * 192.96458 * 16 14 12 18 18 S 1.83292 * 102.56594 * 42.43425 * 17 16 14 19 19 O 1.42099 * 109.35638 * 90.18644 * 18 17 16 20 20 O 1.42103 * 109.34935 * 223.38743 * 18 17 16 21 21 C 1.54163 * 109.64841 * 60.72068 * 14 12 11 22 22 C 1.52999 * 117.49641 * 294.78091 * 9 7 2 23 23 C 1.53003 * 60.02864 * 252.51718 * 22 9 7 24 24 H 0.96997 * 120.00302 * 5.01809 * 1 2 3 25 25 H 1.09004 * 109.47167 * 159.97311 * 10 9 7 26 26 H 1.08995 * 109.47704 * 279.97242 * 10 9 7 27 27 H 0.96999 * 120.00009 * 6.34530 * 11 10 9 28 28 H 1.08994 * 110.02534 * 312.25312 * 16 14 12 29 29 H 1.08998 * 110.03047 * 73.62741 * 16 14 12 30 30 H 1.08999 * 110.79024 * 160.70117 * 17 16 14 31 31 H 1.09000 * 110.78953 * 283.97510 * 17 16 14 32 32 H 1.08997 * 110.31845 * 266.66790 * 21 14 12 33 33 H 1.09003 * 110.32091 * 28.85941 * 21 14 12 34 34 H 1.09002 * 117.50096 * 145.02520 * 22 9 7 35 35 H 1.09000 * 117.50186 * 0.02562 * 22 9 7 36 36 H 1.09003 * 117.49509 * 107.47731 * 23 22 9 37 37 H 1.08999 * 117.50104 * 252.46876 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8901 2.3966 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0804 -1.1963 -0.0946 9 6 1.2569 -2.4959 0.1301 10 6 0.6133 -3.0194 -1.1554 11 7 1.5202 -2.7921 -2.2833 12 6 1.1120 -3.0566 -3.5403 13 8 -0.0060 -3.4832 -3.7376 14 6 2.0448 -2.8222 -4.7004 15 1 2.3365 -1.7724 -4.7297 16 6 1.3405 -3.2009 -6.0151 17 6 2.4397 -3.2556 -7.1073 18 16 3.8128 -4.1138 -6.2484 19 8 3.6924 -5.5151 -6.4509 20 8 5.0374 -3.4564 -6.5446 21 6 3.3007 -3.7021 -4.5417 22 6 0.5223 -2.7596 1.4460 23 6 1.8038 -3.5288 1.1185 24 1 -0.4850 0.8368 -0.0735 25 1 0.4185 -4.0872 -1.0555 26 1 -0.3251 -2.4939 -1.3322 27 1 2.4145 -2.4512 -2.1255 28 1 0.8640 -4.1761 -5.9158 29 1 0.5965 -2.4464 -6.2708 30 1 2.1013 -3.8323 -7.9681 31 1 2.7358 -2.2509 -7.4089 32 1 4.0895 -3.1476 -4.0335 33 1 3.0593 -4.6103 -3.9895 34 1 -0.4194 -3.3063 1.3960 35 1 0.5794 -1.9914 2.2171 36 1 2.7041 -3.2662 1.6740 37 1 1.7052 -4.5814 0.8535 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404173121.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:09 Heat of formation + Delta-G solvation = -115.558467 kcal Electronic energy + Delta-G solvation = -21135.379867 eV Core-core repulsion = 17811.446729 eV Total energy + Delta-G solvation = -3323.933138 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.90971 -38.57391 -38.06911 -37.10758 -36.61559 -34.93109 -34.01480 -31.15041 -28.20495 -27.36669 -26.29768 -23.19054 -22.89778 -21.36357 -20.69324 -19.78813 -18.59725 -17.99040 -17.72696 -17.20871 -16.68992 -16.66422 -16.32151 -16.06455 -15.56183 -14.96909 -14.88684 -14.67350 -14.38355 -13.71576 -13.52833 -13.35498 -13.22520 -13.12602 -13.02152 -12.92302 -12.88121 -12.82066 -12.31076 -12.19151 -12.02427 -11.80970 -11.48716 -11.29233 -10.90086 -10.71217 -10.46213 -10.10850 -9.69372 -8.09880 -6.23775 -0.89393 1.41600 1.47938 1.52852 1.55640 1.75658 2.36756 2.44042 2.66324 3.10544 3.19923 3.43074 3.46303 3.55518 3.69702 3.86537 4.06688 4.24950 4.29480 4.51916 4.57838 4.65210 4.68391 4.75301 4.84973 4.98277 5.00238 5.08511 5.13473 5.26499 5.48520 5.61122 5.73557 5.78229 6.37449 6.80445 6.87268 7.41667 7.47057 8.97791 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.019469 B = 0.004714 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.823431 B = 5937.892142 C = 6382.425932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.032 3.968 3 Si 0.945 3.055 4 H -0.259 1.259 5 H -0.284 1.284 6 H -0.292 1.292 7 C -0.502 4.502 8 H 0.068 0.932 9 C 0.005 3.995 10 C 0.176 3.824 11 N -0.689 5.689 12 C 0.509 3.491 13 O -0.593 6.593 14 C -0.100 4.100 15 H 0.144 0.856 16 C -0.106 4.106 17 C -0.558 4.558 18 S 2.409 3.591 19 O -0.977 6.977 20 O -0.970 6.970 21 C -0.586 4.586 22 C -0.168 4.168 23 C -0.180 4.180 24 H 0.258 0.742 25 H 0.040 0.960 26 H 0.032 0.968 27 H 0.413 0.587 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.161 0.839 31 H 0.167 0.833 32 H 0.169 0.831 33 H 0.140 0.860 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.321 -4.170 -11.592 13.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.170 4.170 3 Si 0.772 3.228 4 H -0.183 1.183 5 H -0.210 1.210 6 H -0.218 1.218 7 C -0.540 4.540 8 H 0.086 0.914 9 C 0.004 3.996 10 C 0.051 3.949 11 N -0.338 5.338 12 C 0.295 3.705 13 O -0.475 6.475 14 C -0.122 4.122 15 H 0.162 0.838 16 C -0.145 4.145 17 C -0.690 4.690 18 S 2.595 3.405 19 O -0.974 6.974 20 O -0.967 6.967 21 C -0.716 4.716 22 C -0.206 4.206 23 C -0.217 4.217 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.250 0.750 28 H 0.105 0.895 29 H 0.128 0.872 30 H 0.179 0.821 31 H 0.185 0.815 32 H 0.187 0.813 33 H 0.159 0.841 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.211 -4.889 -11.969 14.343 hybrid contribution -0.440 1.581 0.964 1.903 sum 5.771 -3.308 -11.005 12.859 Atomic orbital electron populations 1.70108 1.07385 1.27231 1.49527 1.25642 0.95250 1.01833 0.94227 0.85705 0.79699 0.80312 0.77106 1.18278 1.21019 1.21821 1.20620 0.93031 0.89129 1.51185 0.91437 1.19178 0.98966 0.94442 0.87004 1.20537 0.92016 0.96224 0.86135 1.45854 1.18471 1.64143 1.05312 1.20820 0.87715 0.77295 0.84703 1.90653 1.22842 1.48327 1.85646 1.21803 0.92693 1.04079 0.93637 0.83777 1.22075 0.97807 1.05916 0.88666 1.30513 1.13172 1.16193 1.09152 1.08386 0.77339 0.75243 0.79483 1.93571 1.87865 1.31201 1.84745 1.93574 1.43100 1.76937 1.83089 1.30587 1.06526 1.10342 1.24125 1.22473 0.94505 1.02002 1.01642 1.23081 0.96954 0.96195 1.05489 0.93292 0.94142 0.94976 0.75011 0.89480 0.87231 0.82090 0.81479 0.81276 0.84148 0.91233 0.91962 0.89671 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.78 13.11 21.44 0.28 -48.50 16 2 C 0.03 1.58 5.42 84.65 0.46 2.04 16 3 Si 0.95 39.47 29.55 68.60 2.03 41.50 16 4 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.50 -23.64 7.51 25.60 0.19 -23.45 16 8 H 0.07 3.04 7.82 -2.91 -0.02 3.02 16 9 C 0.00 0.21 1.63 -52.91 -0.09 0.12 16 10 C 0.18 7.52 5.76 86.38 0.50 8.02 16 11 N -0.69 -24.65 5.19 -463.06 -2.40 -27.06 16 12 C 0.51 16.77 7.00 87.66 0.61 17.38 16 13 O -0.59 -24.16 15.78 -3.04 -0.05 -24.21 16 14 C -0.10 -2.06 2.95 -10.85 -0.03 -2.09 16 15 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 16 C -0.11 -1.84 5.27 31.59 0.17 -1.67 16 17 C -0.56 -6.16 7.31 72.69 0.53 -5.62 16 18 S 2.41 41.42 6.10 -56.49 -0.34 41.08 16 19 O -0.98 -24.76 18.14 -127.49 -2.31 -27.07 16 20 O -0.97 -22.61 18.15 -127.49 -2.31 -24.92 16 21 C -0.59 -9.87 6.60 72.38 0.48 -9.39 16 22 C -0.17 -7.34 9.71 30.59 0.30 -7.04 16 23 C -0.18 -6.84 9.88 30.62 0.30 -6.54 16 24 H 0.26 13.50 8.32 -92.71 -0.77 12.73 16 25 H 0.04 1.66 7.95 -2.39 -0.02 1.64 16 26 H 0.03 1.63 8.12 -2.39 -0.02 1.61 16 27 H 0.41 13.31 7.53 -92.71 -0.70 12.62 16 28 H 0.09 1.75 7.72 -2.39 -0.02 1.73 16 29 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.16 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.17 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.17 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.14 2.50 7.88 -2.39 -0.02 2.48 16 34 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 35 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 36 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.09 2.99 8.09 -2.39 -0.02 2.98 16 Total: -1.00 -72.42 324.93 -1.32 -73.74 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.38 Total: 23.68 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: 3.42 Total: -28.24 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -2.12 Total: -75.55 kcal Atomic # 8 Polarization: -71.52 SS G_CDS: -4.67 Total: -76.19 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Atomic # 16 Polarization: 41.42 SS G_CDS: -0.34 Total: 41.08 kcal Total: -72.42 -1.32 -73.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404173121.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.823 kcal (2) G-P(sol) polarization free energy of solvation -72.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds