Wall clock time and date at job start Wed Apr 15 2020 11:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00346 * 2 1 4 4 H 1.48504 * 109.46824 * 239.99464 * 3 2 1 5 5 H 1.48497 * 109.47325 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47259 * 119.99763 * 3 2 1 7 7 C 1.37878 * 119.99366 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00093 * 189.23565 * 7 2 1 9 9 C 1.50701 * 120.00396 * 9.23929 * 7 2 1 10 10 C 1.53006 * 115.54722 * 273.36576 * 9 7 2 11 11 N 1.46501 * 109.46926 * 278.10193 * 10 9 7 12 12 C 1.34773 * 119.99779 * 185.21973 * 11 10 9 13 13 O 1.21274 * 120.00214 * 5.05071 * 12 11 10 14 14 C 1.50700 * 119.99779 * 184.77249 * 12 11 10 15 15 H 1.09005 * 109.64562 * 335.63679 * 14 12 11 16 16 C 1.53879 * 109.64618 * 95.93097 * 14 12 11 17 17 C 1.55053 * 106.62446 * 167.03222 * 16 14 12 18 18 S 1.83288 * 102.56538 * 317.56935 * 17 16 14 19 19 O 1.42103 * 109.35238 * 269.81125 * 18 17 16 20 20 O 1.42097 * 109.35320 * 136.61156 * 18 17 16 21 21 C 1.54163 * 109.64865 * 215.20747 * 14 12 11 22 22 C 1.52999 * 117.51895 * 59.05905 * 9 7 2 23 23 C 1.52999 * 117.50271 * 127.69190 * 9 7 2 24 24 H 0.97002 * 119.99454 * 5.02962 * 1 2 3 25 25 H 1.08997 * 109.46753 * 158.10758 * 10 9 7 26 26 H 1.08997 * 109.46848 * 38.10682 * 10 9 7 27 27 H 0.97002 * 119.99816 * 5.22872 * 11 10 9 28 28 H 1.09000 * 110.02977 * 286.32325 * 16 14 12 29 29 H 1.09004 * 110.02740 * 47.74205 * 16 14 12 30 30 H 1.09000 * 110.79221 * 199.29843 * 17 16 14 31 31 H 1.09003 * 110.95010 * 75.91056 * 17 16 14 32 32 H 1.09004 * 110.31595 * 331.14225 * 21 14 12 33 33 H 1.08997 * 110.32040 * 93.33654 * 21 14 12 34 34 H 1.08998 * 117.50090 * 214.97509 * 22 9 7 35 35 H 1.08997 * 117.49750 * 359.97438 * 22 9 7 36 36 H 1.08998 * 117.49682 * 359.97438 * 23 9 7 37 37 H 1.09001 * 117.50045 * 144.99780 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6961 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0740 -1.2003 0.1507 9 6 1.2655 -2.4908 -0.2084 10 6 0.6806 -3.1278 1.0538 11 7 1.7275 -3.8776 1.7525 12 6 1.4190 -4.6123 2.8394 13 8 0.2623 -4.7271 3.1853 14 6 2.5107 -5.2963 3.6212 15 1 3.3738 -5.4628 2.9766 16 6 2.9218 -4.4161 4.8145 17 6 3.7863 -5.3056 5.7449 18 16 2.8674 -6.8915 5.7469 19 8 1.9220 -6.8867 6.8078 20 8 3.7860 -7.9681 5.6196 21 6 1.9960 -6.6470 4.1573 22 6 0.4805 -2.6551 -1.5114 23 6 1.7823 -3.4306 -1.2996 24 1 -0.4849 0.8369 -0.0737 25 1 -0.1282 -3.8044 0.7779 26 1 0.2939 -2.3472 1.7089 27 1 2.6428 -3.8451 1.4328 28 1 3.5046 -3.5634 4.4661 29 1 2.0353 -4.0706 5.3464 30 1 3.8330 -4.8843 6.7491 31 1 4.7878 -5.4393 5.3360 32 1 0.9188 -6.6044 4.3188 33 1 2.2440 -7.4493 3.4624 34 1 -0.4525 -3.2170 -1.4694 35 1 0.4980 -1.8250 -2.2175 36 1 2.6565 -3.1108 -1.8666 37 1 1.7057 -4.5027 -1.1182 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404173123.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:12 Heat of formation + Delta-G solvation = -89.865003 kcal Electronic energy + Delta-G solvation = -20857.156848 eV Core-core repulsion = 17534.337862 eV Total energy + Delta-G solvation = -3322.818986 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.73074 -37.21851 -37.02034 -36.22607 -35.71271 -33.49302 -32.05151 -30.32870 -27.21319 -25.77045 -24.83509 -22.36217 -21.31480 -19.85923 -19.33706 -19.02205 -17.56887 -17.08362 -16.33447 -15.92653 -15.82809 -15.19026 -14.88275 -14.59865 -14.32719 -14.12789 -13.87462 -13.56566 -12.81861 -12.61611 -12.42370 -12.35512 -12.23769 -12.17758 -11.78245 -11.61641 -11.35090 -11.16061 -10.98914 -10.96983 -10.62347 -10.54257 -10.38678 -9.82918 -9.54476 -9.06873 -8.55925 -8.37121 -8.33118 -6.18558 -4.26267 -0.15863 2.28004 2.82486 3.20744 3.28021 3.28966 3.37934 3.51483 3.87718 4.08386 4.28684 4.37122 4.44966 4.61697 4.66486 5.07305 5.10583 5.23522 5.25266 5.30516 5.44511 5.67203 5.69311 5.90889 6.23074 6.31838 6.48076 6.56472 6.72451 6.98072 7.06180 7.32096 7.38024 7.71868 8.02621 8.23549 8.58455 8.75640 9.41329 10.90259 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.025905 B = 0.003859 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.627766 B = 7253.551149 C = 7713.917348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.074 3.926 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.503 4.503 8 H 0.060 0.940 9 C 0.027 3.973 10 C 0.160 3.840 11 N -0.703 5.703 12 C 0.514 3.486 13 O -0.546 6.546 14 C -0.103 4.103 15 H 0.110 0.890 16 C -0.111 4.111 17 C -0.585 4.585 18 S 2.391 3.609 19 O -0.935 6.935 20 O -0.942 6.942 21 C -0.581 4.581 22 C -0.147 4.147 23 C -0.209 4.209 24 H 0.263 0.737 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.400 0.600 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.154 0.846 33 H 0.141 0.859 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.743 -9.494 6.907 14.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.026 3.974 10 C 0.037 3.963 11 N -0.351 5.351 12 C 0.298 3.702 13 O -0.425 6.425 14 C -0.126 4.126 15 H 0.128 0.872 16 C -0.150 4.150 17 C -0.714 4.714 18 S 2.574 3.426 19 O -0.932 6.932 20 O -0.939 6.939 21 C -0.711 4.711 22 C -0.186 4.186 23 C -0.247 4.247 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.234 0.766 28 H 0.126 0.874 29 H 0.115 0.885 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.172 0.828 33 H 0.159 0.841 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.699 -10.171 7.869 14.500 hybrid contribution 0.851 1.674 -0.943 2.102 sum 7.550 -8.497 6.925 13.310 Atomic orbital electron populations 1.70019 1.05911 1.27290 1.47528 1.24968 0.94764 0.98989 0.94298 0.86726 0.79741 0.83261 0.78669 1.20217 1.21233 1.20197 1.20326 0.93248 0.88942 1.51489 0.92195 1.19066 0.98593 0.94183 0.85573 1.21205 0.87744 0.92971 0.94349 1.46148 1.13484 1.47383 1.28057 1.19951 0.89334 0.79620 0.81346 1.90681 1.20499 1.62464 1.68825 1.21672 0.99406 0.92828 0.98709 0.87217 1.22163 1.00422 0.98854 0.93522 1.30615 1.11858 1.20115 1.08847 1.09022 0.77346 0.78029 0.78188 1.93631 1.61222 1.86799 1.51527 1.93606 1.62845 1.50736 1.86759 1.30540 1.15738 1.03945 1.20836 1.22512 0.92520 1.00882 1.02642 1.22990 0.98537 0.95652 1.07507 0.92719 0.93828 0.90711 0.76583 0.87400 0.88507 0.84172 0.84217 0.82775 0.84089 0.91621 0.89817 0.90221 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.34 12.95 55.43 0.72 -22.62 16 2 C 0.07 1.89 5.36 -17.82 -0.10 1.79 16 3 Si 0.89 19.74 29.55 -169.99 -5.02 14.71 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 7 C -0.50 -12.31 8.82 -34.44 -0.30 -12.61 16 8 H 0.06 1.44 7.83 -52.48 -0.41 1.02 16 9 C 0.03 0.59 1.36 -155.66 -0.21 0.38 16 10 C 0.16 3.37 5.61 -4.04 -0.02 3.35 16 11 N -0.70 -11.70 5.49 -60.29 -0.33 -12.03 16 12 C 0.51 8.05 6.83 -10.99 -0.08 7.97 16 13 O -0.55 -10.72 15.80 5.56 0.09 -10.63 16 14 C -0.10 -1.06 2.95 -90.71 -0.27 -1.33 16 15 H 0.11 0.78 8.09 -51.93 -0.42 0.36 16 16 C -0.11 -0.98 5.79 -25.19 -0.15 -1.12 16 17 C -0.58 -3.90 7.31 38.24 0.28 -3.62 16 18 S 2.39 22.38 6.11 -107.50 -0.66 21.72 16 19 O -0.93 -12.44 18.15 -57.71 -1.05 -13.49 16 20 O -0.94 -11.43 18.15 -57.71 -1.05 -12.48 16 21 C -0.58 -5.54 6.70 37.77 0.25 -5.29 16 22 C -0.15 -3.20 9.38 -26.73 -0.25 -3.45 16 23 C -0.21 -4.03 9.89 -26.73 -0.26 -4.30 16 24 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 25 H 0.04 0.94 7.88 -51.93 -0.41 0.53 16 26 H 0.07 1.82 8.11 -51.93 -0.42 1.40 16 27 H 0.40 5.74 8.44 -40.82 -0.34 5.40 16 28 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.10 0.95 8.11 -51.93 -0.42 0.53 16 30 H 0.14 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.14 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.15 1.74 6.98 -51.93 -0.36 1.38 16 33 H 0.14 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.36 8.07 -51.93 -0.42 0.94 16 35 H 0.08 1.94 8.14 -51.93 -0.42 1.52 16 36 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 326.31 15.07 4.92 4.92 Total: -1.00 -33.78 326.31 -8.79 -42.56 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.30 Total: 5.56 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -1.10 Total: -18.23 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.39 Total: -34.65 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -2.01 Total: -36.60 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 16 Polarization: 22.38 SS G_CDS: -0.66 Total: 21.72 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.78 -8.79 -42.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404173123.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.301 kcal (2) G-P(sol) polarization free energy of solvation -33.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds