Wall clock time and date at job start Wed Apr 15 2020 11:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00346 * 2 1 4 4 H 1.48504 * 109.46824 * 239.99464 * 3 2 1 5 5 H 1.48497 * 109.47325 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47259 * 119.99763 * 3 2 1 7 7 C 1.37878 * 119.99366 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00093 * 189.23565 * 7 2 1 9 9 C 1.50701 * 120.00396 * 9.23929 * 7 2 1 10 10 C 1.53006 * 115.54722 * 273.36576 * 9 7 2 11 11 N 1.46501 * 109.46926 * 278.10193 * 10 9 7 12 12 C 1.34773 * 119.99779 * 185.21973 * 11 10 9 13 13 O 1.21274 * 120.00214 * 5.05071 * 12 11 10 14 14 C 1.50700 * 119.99779 * 184.77249 * 12 11 10 15 15 H 1.09005 * 109.64562 * 335.63679 * 14 12 11 16 16 C 1.53879 * 109.64618 * 95.93097 * 14 12 11 17 17 C 1.55053 * 106.62446 * 167.03222 * 16 14 12 18 18 S 1.83288 * 102.56538 * 317.56935 * 17 16 14 19 19 O 1.42103 * 109.35238 * 269.81125 * 18 17 16 20 20 O 1.42097 * 109.35320 * 136.61156 * 18 17 16 21 21 C 1.54163 * 109.64865 * 215.20747 * 14 12 11 22 22 C 1.52999 * 117.51895 * 59.05905 * 9 7 2 23 23 C 1.52999 * 117.50271 * 127.69190 * 9 7 2 24 24 H 0.97002 * 119.99454 * 5.02962 * 1 2 3 25 25 H 1.08997 * 109.46753 * 158.10758 * 10 9 7 26 26 H 1.08997 * 109.46848 * 38.10682 * 10 9 7 27 27 H 0.97002 * 119.99816 * 5.22872 * 11 10 9 28 28 H 1.09000 * 110.02977 * 286.32325 * 16 14 12 29 29 H 1.09004 * 110.02740 * 47.74205 * 16 14 12 30 30 H 1.09000 * 110.79221 * 199.29843 * 17 16 14 31 31 H 1.09003 * 110.95010 * 75.91056 * 17 16 14 32 32 H 1.09004 * 110.31595 * 331.14225 * 21 14 12 33 33 H 1.08997 * 110.32040 * 93.33654 * 21 14 12 34 34 H 1.08998 * 117.50090 * 214.97509 * 22 9 7 35 35 H 1.08997 * 117.49750 * 359.97438 * 22 9 7 36 36 H 1.08998 * 117.49682 * 359.97438 * 23 9 7 37 37 H 1.09001 * 117.50045 * 144.99780 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6961 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0740 -1.2003 0.1507 9 6 1.2655 -2.4908 -0.2084 10 6 0.6806 -3.1278 1.0538 11 7 1.7275 -3.8776 1.7525 12 6 1.4190 -4.6123 2.8394 13 8 0.2623 -4.7271 3.1853 14 6 2.5107 -5.2963 3.6212 15 1 3.3738 -5.4628 2.9766 16 6 2.9218 -4.4161 4.8145 17 6 3.7863 -5.3056 5.7449 18 16 2.8674 -6.8915 5.7469 19 8 1.9220 -6.8867 6.8078 20 8 3.7860 -7.9681 5.6196 21 6 1.9960 -6.6470 4.1573 22 6 0.4805 -2.6551 -1.5114 23 6 1.7823 -3.4306 -1.2996 24 1 -0.4849 0.8369 -0.0737 25 1 -0.1282 -3.8044 0.7779 26 1 0.2939 -2.3472 1.7089 27 1 2.6428 -3.8451 1.4328 28 1 3.5046 -3.5634 4.4661 29 1 2.0353 -4.0706 5.3464 30 1 3.8330 -4.8843 6.7491 31 1 4.7878 -5.4393 5.3360 32 1 0.9188 -6.6044 4.3188 33 1 2.2440 -7.4493 3.4624 34 1 -0.4525 -3.2170 -1.4694 35 1 0.4980 -1.8250 -2.2175 36 1 2.6565 -3.1108 -1.8666 37 1 1.7057 -4.5027 -1.1182 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404173123.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:11 Heat of formation + Delta-G solvation = -115.884923 kcal Electronic energy + Delta-G solvation = -20858.285156 eV Core-core repulsion = 17534.337862 eV Total energy + Delta-G solvation = -3323.947294 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.99495 -38.62421 -38.07497 -37.12058 -36.65384 -34.98416 -33.93702 -31.06646 -28.62160 -27.42895 -26.01396 -23.35065 -22.90326 -21.29382 -20.84469 -19.79486 -18.71214 -18.09055 -17.71512 -16.93706 -16.76898 -16.65463 -16.42580 -16.10201 -15.39572 -15.19790 -14.96925 -14.77805 -14.37671 -13.71576 -13.47856 -13.43773 -13.22043 -13.16957 -13.02486 -13.00098 -12.82311 -12.73195 -12.38357 -12.15596 -12.04598 -11.79415 -11.53185 -11.26941 -10.92871 -10.79931 -10.44011 -10.02246 -9.90662 -8.11125 -6.22666 -0.89722 1.45248 1.47614 1.48999 1.53668 1.68652 2.31289 2.44765 2.64149 3.10436 3.19248 3.30826 3.48386 3.64966 3.67505 3.84622 4.04895 4.19239 4.26581 4.56203 4.58467 4.62594 4.65063 4.76215 4.84139 4.94151 4.98966 5.02529 5.04555 5.26836 5.55914 5.62192 5.67056 5.78840 6.36876 6.72405 6.85655 7.34089 7.47521 8.97426 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.025905 B = 0.003859 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.627766 B = 7253.551149 C = 7713.917348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.947 3.053 4 H -0.271 1.271 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.505 4.505 8 H 0.066 0.934 9 C 0.005 3.995 10 C 0.177 3.823 11 N -0.697 5.697 12 C 0.511 3.489 13 O -0.592 6.592 14 C -0.097 4.097 15 H 0.154 0.846 16 C -0.117 4.117 17 C -0.552 4.552 18 S 2.403 3.597 19 O -0.982 6.982 20 O -0.969 6.969 21 C -0.582 4.582 22 C -0.164 4.164 23 C -0.171 4.171 24 H 0.258 0.742 25 H 0.031 0.969 26 H 0.032 0.968 27 H 0.415 0.585 28 H 0.127 0.873 29 H 0.079 0.921 30 H 0.160 0.840 31 H 0.176 0.824 32 H 0.132 0.868 33 H 0.163 0.837 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.925 -9.901 6.918 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.176 4.176 3 Si 0.773 3.227 4 H -0.196 1.196 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.542 4.542 8 H 0.085 0.915 9 C 0.004 3.996 10 C 0.053 3.947 11 N -0.346 5.346 12 C 0.297 3.703 13 O -0.474 6.474 14 C -0.120 4.120 15 H 0.172 0.828 16 C -0.156 4.156 17 C -0.684 4.684 18 S 2.591 3.409 19 O -0.979 6.979 20 O -0.966 6.966 21 C -0.712 4.712 22 C -0.203 4.203 23 C -0.208 4.208 24 H 0.067 0.933 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.251 0.749 28 H 0.145 0.855 29 H 0.098 0.902 30 H 0.178 0.822 31 H 0.193 0.807 32 H 0.150 0.850 33 H 0.181 0.819 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.915 -10.624 7.883 16.532 hybrid contribution -0.146 1.806 -0.961 2.051 sum 9.769 -8.818 6.922 14.869 Atomic orbital electron populations 1.70151 1.07327 1.27540 1.49478 1.25679 0.95336 1.02054 0.94484 0.85799 0.78426 0.79573 0.78927 1.19621 1.22054 1.19392 1.20691 0.93641 0.89874 1.50029 0.91542 1.19081 0.99575 0.94726 0.86173 1.20640 0.88638 0.91875 0.93547 1.45972 1.13177 1.47118 1.28372 1.20885 0.90062 0.78645 0.80669 1.90668 1.23111 1.63838 1.69747 1.21800 0.98602 0.92372 0.99185 0.82784 1.22250 1.00583 0.99580 0.93234 1.30468 1.12270 1.15830 1.09866 1.08503 0.76571 0.78831 0.77020 1.93570 1.63079 1.87916 1.53369 1.93567 1.63055 1.53141 1.86878 1.30533 1.14470 1.04547 1.21638 1.22454 0.94145 1.01266 1.02405 1.22978 0.97014 0.96417 1.04394 0.93269 0.95064 0.94954 0.74856 0.85517 0.90199 0.82162 0.80652 0.85010 0.81868 0.91436 0.91951 0.89304 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.78 12.95 21.45 0.28 -49.50 16 2 C 0.03 1.28 5.36 84.65 0.45 1.74 16 3 Si 0.95 40.30 29.55 68.60 2.03 42.33 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.50 -24.32 8.82 25.60 0.23 -24.09 16 8 H 0.07 3.05 7.83 -2.91 -0.02 3.02 16 9 C 0.01 0.23 1.36 -52.93 -0.07 0.16 16 10 C 0.18 7.55 5.61 86.38 0.48 8.03 16 11 N -0.70 -22.19 5.49 -463.07 -2.54 -24.74 16 12 C 0.51 15.44 6.83 87.66 0.60 16.04 16 13 O -0.59 -23.72 15.80 -3.01 -0.05 -23.77 16 14 C -0.10 -1.71 2.95 -10.85 -0.03 -1.74 16 15 H 0.15 1.37 8.09 -2.38 -0.02 1.35 16 16 C -0.12 -1.69 5.79 31.59 0.18 -1.51 16 17 C -0.55 -5.02 7.31 72.69 0.53 -4.49 16 18 S 2.40 40.84 6.11 -56.49 -0.34 40.50 16 19 O -0.98 -26.06 18.15 -127.49 -2.31 -28.38 16 20 O -0.97 -21.60 18.15 -127.49 -2.31 -23.91 16 21 C -0.58 -10.15 6.70 72.38 0.49 -9.67 16 22 C -0.16 -7.13 9.38 30.59 0.29 -6.84 16 23 C -0.17 -6.17 9.89 30.59 0.30 -5.87 16 24 H 0.26 13.78 8.32 -92.71 -0.77 13.01 16 25 H 0.03 1.38 7.88 -2.39 -0.02 1.36 16 26 H 0.03 1.63 8.11 -2.39 -0.02 1.61 16 27 H 0.41 10.64 8.44 -92.71 -0.78 9.86 16 28 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.08 1.46 8.11 -2.38 -0.02 1.44 16 30 H 0.16 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.18 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.13 3.02 6.98 -2.38 -0.02 3.00 16 33 H 0.16 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.07 2.84 8.07 -2.39 -0.02 2.82 16 35 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 36 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 37 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -75.87 326.31 -1.51 -77.39 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.30 Total: 18.33 kcal Atomic # 6 Polarization: -31.69 SS G_CDS: 3.45 Total: -28.25 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -2.26 Total: -74.24 kcal Atomic # 8 Polarization: -71.39 SS G_CDS: -4.67 Total: -76.06 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Atomic # 16 Polarization: 40.84 SS G_CDS: -0.34 Total: 40.50 kcal Total: -75.87 -1.51 -77.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404173123.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.498 kcal (2) G-P(sol) polarization free energy of solvation -75.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds