Wall clock time and date at job start Wed Apr 15 2020 11:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00214 * 2 1 4 4 H 1.48510 * 109.47174 * 274.99840 * 3 2 1 5 5 H 1.48501 * 109.47214 * 34.99860 * 3 2 1 6 6 H 1.48503 * 109.47090 * 154.99852 * 3 2 1 7 7 C 1.37881 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00067 * 184.85939 * 7 2 1 9 9 C 1.50701 * 119.99619 * 4.85668 * 7 2 1 10 10 O 1.42905 * 110.88825 * 298.40489 * 9 7 2 11 11 C 1.55153 * 111.00647 * 62.33250 * 9 7 2 12 12 C 1.54334 * 103.02281 * 153.37837 * 11 9 7 13 13 N 1.47028 * 107.26650 * 338.14304 * 12 11 9 14 14 C 1.34775 * 125.65225 * 178.84960 * 13 12 11 15 15 O 1.21281 * 120.00215 * 184.51147 * 14 13 12 16 16 C 1.50700 * 119.99818 * 4.51127 * 14 13 12 17 17 O 1.42905 * 108.70909 * 319.69230 * 16 14 13 18 18 C 1.52337 * 108.86831 * 78.14889 * 16 14 13 19 19 C 1.54258 * 112.58478 * 120.81835 * 18 16 14 20 20 S 1.83959 * 102.58247 * 24.52882 * 19 18 16 21 21 C 1.54257 * 108.86828 * 201.22785 * 16 14 13 22 22 C 1.47429 * 108.70161 * 358.58278 * 13 12 11 23 23 H 0.97000 * 119.99836 * 0.02562 * 1 2 3 24 24 H 0.96705 * 113.99769 * 56.12087 * 10 9 7 25 25 H 1.08996 * 110.71868 * 271.93586 * 11 9 7 26 26 H 1.09002 * 110.72378 * 35.03218 * 11 9 7 27 27 H 1.08995 * 109.99526 * 218.66308 * 12 11 9 28 28 H 1.09005 * 109.78092 * 97.49180 * 12 11 9 29 29 H 0.96705 * 113.99507 * 307.39223 * 17 16 14 30 30 H 1.08999 * 108.86821 * 241.63480 * 18 16 14 31 31 H 1.08999 * 108.86881 * 0.02562 * 18 16 14 32 32 H 1.08992 * 110.79027 * 266.25828 * 19 18 16 33 33 H 1.09001 * 110.95013 * 142.87382 * 19 18 16 34 34 H 1.09001 * 110.78945 * 332.92742 * 21 16 14 35 35 H 1.08998 * 110.78586 * 96.18786 * 21 16 14 36 36 H 1.08995 * 110.36863 * 143.19942 * 22 13 12 37 37 H 1.09003 * 110.36620 * 265.52296 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3911 2.1074 -1.3948 5 1 1.5035 2.6198 0.8030 6 1 3.5956 1.4118 0.5917 7 6 2.0045 -1.1941 -0.0005 8 1 3.0815 -1.1959 0.0787 9 6 1.2549 -2.4968 -0.1116 10 8 0.3664 -2.6692 0.9942 11 6 0.4910 -2.5857 -1.4591 12 6 0.3965 -4.1063 -1.7056 13 7 1.4640 -4.7429 -0.9202 14 6 1.7034 -6.0673 -0.8484 15 8 2.5623 -6.4888 -0.1031 16 6 0.9037 -7.0244 -1.6943 17 8 -0.4592 -6.5950 -1.7084 18 6 1.4445 -6.9936 -3.1181 19 6 1.9391 -8.3750 -3.5940 20 16 0.9767 -9.5317 -2.5357 21 6 0.9776 -8.4298 -1.0627 22 6 2.2334 -3.6921 -0.2293 23 1 -0.4850 0.8401 -0.0004 24 1 -0.2649 -1.9456 1.1081 25 1 -0.5018 -2.1448 -1.3693 26 1 1.0560 -2.1013 -2.2555 27 1 0.5368 -4.3216 -2.7648 28 1 -0.5754 -4.4737 -1.3761 29 1 -0.8366 -6.4554 -0.8290 30 1 0.6552 -6.6519 -3.7877 31 1 2.2735 -6.2874 -3.1651 32 1 3.0085 -8.4859 -3.4149 33 1 1.7068 -8.5305 -4.6476 34 1 1.8979 -8.5491 -0.4909 35 1 0.1068 -8.6179 -0.4347 36 1 2.5369 -4.0328 0.7606 37 1 3.1062 -3.4112 -0.8188 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:14 Heat of formation + Delta-G solvation = -126.101039 kcal Electronic energy + Delta-G solvation = -21915.997180 eV Core-core repulsion = 18591.606882 eV Total energy + Delta-G solvation = -3324.390298 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.38978 -37.84561 -36.86581 -34.42363 -33.69970 -32.26016 -29.96814 -29.39065 -28.41924 -26.11540 -24.76151 -22.84293 -21.13957 -19.86683 -19.44493 -17.78232 -17.16677 -16.86791 -15.86709 -15.68078 -15.18068 -15.03467 -14.82677 -14.32415 -14.16621 -13.73902 -13.24053 -12.81644 -12.70065 -12.44661 -12.19592 -12.12704 -12.05857 -11.84305 -11.51023 -11.43373 -11.40634 -11.01947 -10.73016 -10.62908 -10.54427 -10.21971 -10.09011 -9.50304 -9.26381 -8.73296 -8.29873 -8.12933 -7.81146 -6.37087 -4.44983 1.67219 2.05814 2.71223 3.14222 3.22189 3.23965 3.29726 3.86900 4.17189 4.20183 4.58108 4.68674 4.81176 4.89889 4.93120 5.21060 5.42285 5.49787 5.59994 5.62699 5.68995 5.75777 5.83752 5.98691 6.25337 6.32829 6.53207 6.78632 6.86018 7.23933 7.26939 7.31872 7.65899 7.89613 7.95612 8.34407 8.58016 9.23209 9.36754 10.70588 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.040150 B = 0.004150 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.213049 B = 6746.132771 C = 6776.924047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.065 0.935 9 C 0.250 3.750 10 O -0.585 6.585 11 C -0.141 4.141 12 C 0.105 3.895 13 N -0.594 5.594 14 C 0.495 3.505 15 O -0.546 6.546 16 C 0.130 3.870 17 O -0.537 6.537 18 C -0.114 4.114 19 C -0.063 4.063 20 S -0.285 6.285 21 C -0.084 4.084 22 C 0.116 3.884 23 H 0.269 0.731 24 H 0.385 0.615 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.384 0.616 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.072 0.928 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.605 -10.735 -6.592 12.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.577 4.577 8 H 0.083 0.917 9 C 0.209 3.791 10 O -0.395 6.395 11 C -0.180 4.180 12 C -0.017 4.017 13 N -0.325 5.325 14 C 0.279 3.721 15 O -0.425 6.425 16 C 0.084 3.916 17 O -0.344 6.344 18 C -0.153 4.153 19 C -0.211 4.211 20 S -0.058 6.058 21 C -0.233 4.233 22 C -0.006 4.006 23 H 0.079 0.921 24 H 0.236 0.764 25 H 0.103 0.897 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.234 0.766 30 H 0.121 0.879 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.129 0.871 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.090 0.910 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.358 -12.626 -6.985 14.434 hybrid contribution 0.435 2.673 0.651 2.785 sum 0.077 -9.953 -6.334 11.798 Atomic orbital electron populations 1.69636 1.06010 1.27806 1.49921 1.24985 0.94997 0.99565 0.93353 0.86399 0.79987 0.82438 0.78166 1.20441 1.20973 1.19636 1.21464 0.94095 0.90235 1.51954 0.91662 1.19577 0.86060 0.90431 0.83015 1.86098 1.51412 1.50547 1.51431 1.23226 1.03185 0.90744 1.00821 1.22288 0.90104 0.95421 0.93927 1.48630 1.32412 1.04731 1.46726 1.20791 0.85046 0.82540 0.83685 1.90676 1.35069 1.76910 1.39871 1.21881 0.83182 0.91451 0.95107 1.86662 1.23933 1.89068 1.34714 1.21877 1.02463 0.97418 0.93512 1.24133 1.01814 0.93333 1.01814 1.87864 1.73387 1.30884 1.13649 1.24842 1.08046 0.92696 0.97694 1.22471 0.94595 0.86761 0.96726 0.92065 0.76393 0.89669 0.91552 0.92759 0.91193 0.76636 0.87947 0.89431 0.88827 0.87119 0.86461 0.86976 0.90983 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.29 10.76 55.43 0.60 -21.70 16 2 C 0.07 1.83 5.26 -17.82 -0.09 1.74 16 3 Si 0.90 19.58 29.54 -169.99 -5.02 14.56 16 4 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.54 -13.55 8.26 -34.44 -0.28 -13.84 16 8 H 0.07 1.64 7.79 -52.49 -0.41 1.23 16 9 C 0.25 5.76 0.89 -89.62 -0.08 5.68 16 10 O -0.59 -14.33 13.19 -35.23 -0.46 -14.79 16 11 C -0.14 -2.89 5.49 -24.89 -0.14 -3.02 16 12 C 0.10 1.79 5.63 -3.06 -0.02 1.77 16 13 N -0.59 -10.88 3.33 -170.50 -0.57 -11.45 16 14 C 0.49 8.54 6.25 -10.99 -0.07 8.47 16 15 O -0.55 -11.03 15.67 5.56 0.09 -10.94 16 16 C 0.13 1.75 0.89 -91.45 -0.08 1.67 16 17 O -0.54 -6.86 9.97 -35.23 -0.35 -7.21 16 18 C -0.11 -1.34 5.53 -26.41 -0.15 -1.49 16 19 C -0.06 -0.65 7.46 37.82 0.28 -0.37 16 20 S -0.28 -3.55 23.27 -107.50 -2.50 -6.05 16 21 C -0.08 -1.08 6.53 37.82 0.25 -0.84 16 22 C 0.12 2.46 6.10 -2.52 -0.02 2.45 16 23 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 24 H 0.38 9.54 7.20 45.56 0.33 9.87 16 25 H 0.08 1.84 7.70 -51.93 -0.40 1.44 16 26 H 0.07 1.38 8.03 -51.93 -0.42 0.96 16 27 H 0.05 0.83 7.89 -51.93 -0.41 0.42 16 28 H 0.07 1.13 6.39 -51.93 -0.33 0.80 16 29 H 0.38 4.23 8.53 45.56 0.39 4.62 16 30 H 0.10 1.16 7.83 -51.93 -0.41 0.75 16 31 H 0.09 1.06 7.51 -51.93 -0.39 0.67 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.12 1.66 6.76 -51.93 -0.35 1.31 16 35 H 0.11 1.29 8.04 -51.93 -0.42 0.87 16 36 H 0.07 1.64 7.99 -51.93 -0.42 1.23 16 37 H 0.07 1.50 8.03 -51.93 -0.42 1.08 16 LS Contribution 309.63 15.07 4.67 4.67 Total: -1.00 -27.67 309.63 -7.58 -35.24 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -3.63 Total: 15.46 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -0.39 Total: 2.22 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.03 Total: -33.15 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -0.73 Total: -32.95 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -2.50 Total: -6.05 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.67 -7.58 -35.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.858 kcal (2) G-P(sol) polarization free energy of solvation -27.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds