Wall clock time and date at job start Wed Apr 15 2020 11:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00214 * 2 1 4 4 H 1.48510 * 109.47174 * 274.99840 * 3 2 1 5 5 H 1.48501 * 109.47214 * 34.99860 * 3 2 1 6 6 H 1.48503 * 109.47090 * 154.99852 * 3 2 1 7 7 C 1.37881 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00067 * 184.85939 * 7 2 1 9 9 C 1.50701 * 119.99619 * 4.85668 * 7 2 1 10 10 O 1.42905 * 110.88825 * 298.40489 * 9 7 2 11 11 C 1.55153 * 111.00647 * 62.33250 * 9 7 2 12 12 C 1.54334 * 103.02281 * 153.37837 * 11 9 7 13 13 N 1.47028 * 107.26650 * 338.14304 * 12 11 9 14 14 C 1.34775 * 125.65225 * 178.84960 * 13 12 11 15 15 O 1.21281 * 120.00215 * 184.51147 * 14 13 12 16 16 C 1.50700 * 119.99818 * 4.51127 * 14 13 12 17 17 O 1.42905 * 108.70909 * 319.69230 * 16 14 13 18 18 C 1.52337 * 108.86831 * 78.14889 * 16 14 13 19 19 C 1.54258 * 112.58478 * 120.81835 * 18 16 14 20 20 S 1.83959 * 102.58247 * 24.52882 * 19 18 16 21 21 C 1.54257 * 108.86828 * 201.22785 * 16 14 13 22 22 C 1.47429 * 108.70161 * 358.58278 * 13 12 11 23 23 H 0.97000 * 119.99836 * 0.02562 * 1 2 3 24 24 H 0.96705 * 113.99769 * 56.12087 * 10 9 7 25 25 H 1.08996 * 110.71868 * 271.93586 * 11 9 7 26 26 H 1.09002 * 110.72378 * 35.03218 * 11 9 7 27 27 H 1.08995 * 109.99526 * 218.66308 * 12 11 9 28 28 H 1.09005 * 109.78092 * 97.49180 * 12 11 9 29 29 H 0.96705 * 113.99507 * 307.39223 * 17 16 14 30 30 H 1.08999 * 108.86821 * 241.63480 * 18 16 14 31 31 H 1.08999 * 108.86881 * 0.02562 * 18 16 14 32 32 H 1.08992 * 110.79027 * 266.25828 * 19 18 16 33 33 H 1.09001 * 110.95013 * 142.87382 * 19 18 16 34 34 H 1.09001 * 110.78945 * 332.92742 * 21 16 14 35 35 H 1.08998 * 110.78586 * 96.18786 * 21 16 14 36 36 H 1.08995 * 110.36863 * 143.19942 * 22 13 12 37 37 H 1.09003 * 110.36620 * 265.52296 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3911 2.1074 -1.3948 5 1 1.5035 2.6198 0.8030 6 1 3.5956 1.4118 0.5917 7 6 2.0045 -1.1941 -0.0005 8 1 3.0815 -1.1959 0.0787 9 6 1.2549 -2.4968 -0.1116 10 8 0.3664 -2.6692 0.9942 11 6 0.4910 -2.5857 -1.4591 12 6 0.3965 -4.1063 -1.7056 13 7 1.4640 -4.7429 -0.9202 14 6 1.7034 -6.0673 -0.8484 15 8 2.5623 -6.4888 -0.1031 16 6 0.9037 -7.0244 -1.6943 17 8 -0.4592 -6.5950 -1.7084 18 6 1.4445 -6.9936 -3.1181 19 6 1.9391 -8.3750 -3.5940 20 16 0.9767 -9.5317 -2.5357 21 6 0.9776 -8.4298 -1.0627 22 6 2.2334 -3.6921 -0.2293 23 1 -0.4850 0.8401 -0.0004 24 1 -0.2649 -1.9456 1.1081 25 1 -0.5018 -2.1448 -1.3693 26 1 1.0560 -2.1013 -2.2555 27 1 0.5368 -4.3216 -2.7648 28 1 -0.5754 -4.4737 -1.3761 29 1 -0.8366 -6.4554 -0.8290 30 1 0.6552 -6.6519 -3.7877 31 1 2.2735 -6.2874 -3.1651 32 1 3.0085 -8.4859 -3.4149 33 1 1.7068 -8.5305 -4.6476 34 1 1.8979 -8.5491 -0.4909 35 1 0.1068 -8.6179 -0.4347 36 1 2.5369 -4.0328 0.7606 37 1 3.1062 -3.4112 -0.8188 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:13 Heat of formation + Delta-G solvation = -146.892044 kcal Electronic energy + Delta-G solvation = -21916.898746 eV Core-core repulsion = 18591.606882 eV Total energy + Delta-G solvation = -3325.291864 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.73290 -39.38776 -38.17674 -36.12790 -34.67244 -34.18582 -31.60516 -30.38405 -30.05270 -27.61087 -26.13405 -24.24707 -22.43001 -21.51156 -20.70708 -19.31066 -18.85816 -17.84555 -17.19455 -17.02925 -16.90108 -16.42104 -16.18307 -15.79851 -15.27812 -15.16069 -14.80696 -14.19185 -14.05649 -13.75072 -13.49822 -13.47095 -13.31137 -13.21937 -13.06928 -12.97924 -12.62375 -12.55248 -12.41794 -12.28444 -11.92107 -11.78790 -11.29467 -11.19002 -10.69597 -10.51962 -10.15418 -9.64071 -8.77562 -8.26088 -6.40585 0.72593 1.10854 1.36792 1.41630 1.45755 1.54098 1.88849 2.39404 2.88754 2.99382 3.12401 3.34056 3.69727 3.79406 3.93423 4.01161 4.05263 4.27242 4.31482 4.39283 4.55357 4.58566 4.66712 4.71196 4.77595 4.85727 4.94240 5.17334 5.21355 5.46297 5.53519 5.76757 6.05102 6.31917 6.52551 6.63723 6.93831 7.30318 7.42862 8.80052 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.040150 B = 0.004150 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.213049 B = 6746.132771 C = 6776.924047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.039 3.961 3 Si 0.958 3.042 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.276 1.276 7 C -0.565 4.565 8 H 0.055 0.945 9 C 0.236 3.764 10 O -0.595 6.595 11 C -0.132 4.132 12 C 0.116 3.884 13 N -0.595 5.595 14 C 0.494 3.506 15 O -0.579 6.579 16 C 0.143 3.857 17 O -0.535 6.535 18 C -0.115 4.115 19 C -0.053 4.053 20 S -0.301 6.301 21 C -0.082 4.082 22 C 0.121 3.879 23 H 0.272 0.728 24 H 0.380 0.620 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.393 0.607 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.137 0.863 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.048 0.952 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.025 -11.191 -8.232 13.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.162 4.162 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.603 4.603 8 H 0.073 0.927 9 C 0.196 3.804 10 O -0.404 6.404 11 C -0.171 4.171 12 C -0.006 4.006 13 N -0.326 5.326 14 C 0.281 3.719 15 O -0.460 6.460 16 C 0.097 3.903 17 O -0.343 6.343 18 C -0.154 4.154 19 C -0.201 4.201 20 S -0.074 6.074 21 C -0.231 4.231 22 C -0.001 4.001 23 H 0.082 0.918 24 H 0.231 0.769 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.243 0.757 30 H 0.133 0.867 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.155 0.845 34 H 0.119 0.881 35 H 0.142 0.858 36 H 0.066 0.934 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.795 -13.098 -8.637 15.709 hybrid contribution 0.582 2.811 1.202 3.112 sum -0.213 -10.287 -7.435 12.694 Atomic orbital electron populations 1.69696 1.06672 1.28480 1.49682 1.25576 0.95764 1.01944 0.92953 0.85543 0.78599 0.79178 0.78284 1.19725 1.20728 1.20079 1.21702 0.93941 0.91752 1.52942 0.92672 1.19746 0.86440 0.90429 0.83773 1.86086 1.51530 1.50311 1.52466 1.23020 1.01754 0.93265 0.99030 1.22258 0.90251 0.92795 0.95260 1.48641 1.32442 1.04840 1.46716 1.21571 0.84759 0.82289 0.83305 1.90663 1.36672 1.77344 1.41310 1.21843 0.82862 0.90279 0.95319 1.86656 1.23196 1.88925 1.35508 1.21926 1.02776 0.98354 0.92370 1.24251 1.01791 0.91387 1.02682 1.87956 1.73946 1.31716 1.13828 1.24765 1.07812 0.92482 0.98050 1.22221 0.94730 0.87199 0.95995 0.91835 0.76907 0.90965 0.92049 0.90031 0.89857 0.75681 0.86712 0.89667 0.88158 0.84480 0.88069 0.85846 0.93363 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.02 10.76 21.45 0.23 -44.79 16 2 C 0.04 1.94 5.26 84.66 0.44 2.39 16 3 Si 0.96 39.93 29.54 68.60 2.03 41.96 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 6 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.57 -28.74 8.26 25.60 0.21 -28.53 16 8 H 0.06 2.83 7.79 -2.92 -0.02 2.81 16 9 C 0.24 10.98 0.89 -10.15 -0.01 10.97 16 10 O -0.59 -29.52 13.19 -148.98 -1.97 -31.48 16 11 C -0.13 -5.32 5.49 31.78 0.17 -5.14 16 12 C 0.12 3.74 5.63 86.73 0.49 4.22 16 13 N -0.60 -21.29 3.33 -811.74 -2.70 -23.98 16 14 C 0.49 16.57 6.25 87.66 0.55 17.11 16 15 O -0.58 -23.40 15.67 -3.03 -0.05 -23.45 16 16 C 0.14 3.57 0.89 -11.33 -0.01 3.56 16 17 O -0.53 -12.20 9.97 -148.98 -1.48 -13.69 16 18 C -0.12 -2.38 5.53 30.80 0.17 -2.21 16 19 C -0.05 -0.94 7.46 72.41 0.54 -0.40 16 20 S -0.30 -6.85 23.27 -56.49 -1.31 -8.16 16 21 C -0.08 -2.00 6.53 72.41 0.47 -1.52 16 22 C 0.12 5.21 6.10 86.86 0.53 5.74 16 23 H 0.27 12.88 8.31 -92.71 -0.77 12.11 16 24 H 0.38 19.17 7.20 -74.05 -0.53 18.64 16 25 H 0.07 3.09 7.70 -2.39 -0.02 3.07 16 26 H 0.06 2.50 8.03 -2.39 -0.02 2.48 16 27 H 0.08 2.23 7.89 -2.39 -0.02 2.21 16 28 H 0.08 2.49 6.39 -2.38 -0.02 2.48 16 29 H 0.39 7.69 8.53 -74.05 -0.63 7.05 16 30 H 0.11 2.14 7.83 -2.39 -0.02 2.12 16 31 H 0.08 1.84 7.51 -2.39 -0.02 1.82 16 32 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.10 2.81 6.76 -2.39 -0.02 2.80 16 35 H 0.12 2.65 8.04 -2.39 -0.02 2.63 16 36 H 0.05 2.26 7.99 -2.39 -0.02 2.25 16 37 H 0.08 3.14 8.03 -2.39 -0.02 3.12 16 Total: -1.00 -58.77 309.63 -1.75 -60.52 By element: Atomic # 1 Polarization: 36.95 SS G_CDS: -0.06 Total: 36.89 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 3.56 Total: 6.19 kcal Atomic # 7 Polarization: -66.31 SS G_CDS: -2.47 Total: -68.78 kcal Atomic # 8 Polarization: -65.12 SS G_CDS: -3.50 Total: -68.62 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Atomic # 16 Polarization: -6.85 SS G_CDS: -1.31 Total: -8.16 kcal Total: -58.77 -1.75 -60.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.377 kcal (2) G-P(sol) polarization free energy of solvation -58.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds