Wall clock time and date at job start Wed Apr 15 2020 11:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00172 * 2 1 4 4 H 1.48495 * 109.47490 * 239.99904 * 3 2 1 5 5 H 1.48499 * 109.47038 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46813 * 119.99937 * 3 2 1 7 7 C 1.37882 * 119.99693 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99856 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99661 * 0.02562 * 7 2 1 10 10 O 1.42896 * 110.64619 * 56.85650 * 9 7 2 11 11 C 1.55155 * 110.71751 * 293.51406 * 9 7 2 12 12 C 1.55127 * 101.48819 * 205.97279 * 11 9 7 13 13 N 1.47432 * 104.72028 * 37.30121 * 12 11 9 14 14 C 1.34773 * 125.64947 * 155.82263 * 13 12 11 15 15 O 1.21280 * 120.00058 * 4.49366 * 14 13 12 16 16 C 1.50705 * 119.99621 * 184.50505 * 14 13 12 17 17 O 1.42892 * 108.70815 * 319.54647 * 16 14 13 18 18 C 1.52339 * 108.86367 * 201.08729 * 16 14 13 19 19 C 1.54262 * 112.47476 * 239.10759 * 18 16 14 20 20 S 1.83959 * 102.58131 * 335.54511 * 19 18 16 21 21 C 1.53980 * 108.74590 * 77.90015 * 16 14 13 22 22 C 1.47023 * 108.70162 * 335.54801 * 13 12 11 23 23 H 0.97007 * 119.99588 * 359.97438 * 1 2 3 24 24 H 0.96701 * 114.00020 * 303.13852 * 10 9 7 25 25 H 1.08998 * 111.01053 * 324.21788 * 11 9 7 26 26 H 1.09001 * 111.00398 * 88.02935 * 11 9 7 27 27 H 1.09001 * 110.49996 * 278.46012 * 12 11 9 28 28 H 1.08997 * 110.34784 * 156.05959 * 12 11 9 29 29 H 0.96701 * 113.99733 * 75.55276 * 17 16 14 30 30 H 1.08997 * 108.86374 * 118.36351 * 18 16 14 31 31 H 1.08997 * 108.87212 * 359.85666 * 18 16 14 32 32 H 1.09001 * 110.78381 * 93.81741 * 19 18 16 33 33 H 1.08999 * 110.78575 * 217.08099 * 19 18 16 34 34 H 1.08997 * 110.85983 * 27.20748 * 21 16 14 35 35 H 1.08997 * 110.78382 * 263.70320 * 21 16 14 36 36 H 1.09002 * 109.88030 * 120.70630 * 22 13 12 37 37 H 1.08997 * 109.88841 * 241.72008 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 0.3662 -2.5701 -1.1194 11 6 0.4745 -2.6846 1.3310 12 6 0.3764 -4.2303 1.4186 13 7 1.6647 -4.7178 0.8932 14 6 2.2298 -5.9076 1.1787 15 8 1.6339 -6.7137 1.8613 16 6 3.6022 -6.2362 0.6499 17 8 3.7015 -5.7607 -0.6940 18 6 3.7816 -7.7490 0.6517 19 6 4.9767 -8.2000 1.5166 20 16 6.0502 -6.7062 1.5270 21 6 4.6516 -5.5112 1.5126 22 6 2.2279 -3.6938 0.0011 23 1 -0.4850 0.8401 0.0004 24 1 -0.2684 -1.8419 -1.1662 25 1 1.0364 -2.2772 2.1714 26 1 -0.5164 -2.2342 1.2712 27 1 -0.4466 -4.5960 0.8044 28 1 0.2461 -4.5437 2.4544 29 1 3.8128 -4.8027 -0.7650 30 1 3.9405 -8.0863 -0.3725 31 1 2.8730 -8.2113 1.0374 32 1 4.6510 -8.4495 2.5264 33 1 5.4894 -9.0452 1.0573 34 1 4.2756 -5.3438 2.5219 35 1 4.9507 -4.5712 1.0491 36 1 3.2026 -3.3754 0.3710 37 1 2.3273 -4.0948 -1.0075 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846136.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:18 Heat of formation + Delta-G solvation = -120.991153 kcal Electronic energy + Delta-G solvation = -22038.617977 eV Core-core repulsion = 18714.449260 eV Total energy + Delta-G solvation = -3324.168717 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.47560 -37.86204 -37.01245 -34.57903 -33.42843 -32.27895 -30.30278 -29.21133 -28.50172 -25.93491 -25.09752 -23.06350 -20.78756 -20.12029 -19.59350 -17.57686 -17.08193 -16.85615 -16.41458 -15.85077 -15.18782 -14.99201 -14.69249 -14.32662 -14.17225 -13.65667 -13.14003 -12.94166 -12.76073 -12.46581 -12.36052 -12.15733 -11.89419 -11.79314 -11.46523 -11.44096 -11.15118 -11.04265 -10.95676 -10.70240 -10.58631 -10.36898 -10.25759 -9.61790 -9.14151 -8.77760 -8.35028 -8.23108 -7.83774 -6.41997 -4.51228 1.64654 2.03472 2.69216 3.13059 3.19419 3.19799 3.25570 4.05817 4.14431 4.23897 4.51411 4.65703 4.84659 4.91122 4.97918 5.13212 5.34834 5.42412 5.51713 5.64870 5.68665 5.79711 5.90065 5.94987 6.10822 6.17308 6.35828 6.72987 6.79376 7.15610 7.19526 7.41187 7.59568 7.78874 7.87494 8.29763 8.49590 9.17850 9.31564 10.65682 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.024036 B = 0.005115 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.615709 B = 5472.619230 C = 6131.049743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.252 3.748 10 O -0.586 6.586 11 C -0.138 4.138 12 C 0.102 3.898 13 N -0.599 5.599 14 C 0.507 3.493 15 O -0.547 6.547 16 C 0.130 3.870 17 O -0.546 6.546 18 C -0.118 4.118 19 C -0.061 4.061 20 S -0.279 6.279 21 C -0.093 4.093 22 C 0.097 3.903 23 H 0.271 0.729 24 H 0.388 0.612 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.386 0.614 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.119 0.881 36 H 0.070 0.930 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.112 -8.863 2.228 10.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.580 4.580 8 H 0.083 0.917 9 C 0.211 3.789 10 O -0.396 6.396 11 C -0.176 4.176 12 C -0.019 4.019 13 N -0.330 5.330 14 C 0.292 3.708 15 O -0.427 6.427 16 C 0.084 3.916 17 O -0.357 6.357 18 C -0.157 4.157 19 C -0.209 4.209 20 S -0.052 6.052 21 C -0.241 4.241 22 C -0.025 4.025 23 H 0.082 0.918 24 H 0.241 0.759 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.240 0.760 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.112 0.888 33 H 0.128 0.872 34 H 0.121 0.879 35 H 0.137 0.863 36 H 0.088 0.912 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.180 -10.224 2.352 12.713 hybrid contribution -1.063 2.075 0.291 2.350 sum 6.117 -8.149 2.643 10.527 Atomic orbital electron populations 1.69562 1.06040 1.28085 1.49705 1.24987 0.95026 0.99646 0.93211 0.86448 0.79557 0.81960 0.78900 1.19888 1.21015 1.20035 1.21460 0.93553 0.90190 1.52796 0.91719 1.19355 0.86147 0.90225 0.83149 1.86087 1.51496 1.53504 1.48526 1.23387 1.02999 0.90375 1.00874 1.22478 0.84781 0.96603 0.98068 1.48616 1.22527 1.16001 1.45904 1.20776 0.88044 0.80902 0.81067 1.90639 1.64038 1.47312 1.40683 1.21799 0.91086 0.95237 0.83517 1.86698 1.95384 1.29795 1.23858 1.21944 1.00136 0.90982 1.02625 1.24171 0.95834 0.97421 1.03498 1.87913 1.15093 1.04107 1.98090 1.24893 0.94289 1.00627 1.04328 1.22504 0.97837 0.88979 0.93220 0.91844 0.75922 0.91391 0.89485 0.91830 0.91831 0.75970 0.88524 0.87445 0.88754 0.87187 0.87895 0.86255 0.91157 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.88 10.70 55.43 0.59 -21.29 16 2 C 0.07 1.79 5.28 -17.82 -0.09 1.70 16 3 Si 0.90 19.05 29.54 -169.99 -5.02 14.02 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.54 -12.87 8.21 -34.44 -0.28 -13.16 16 8 H 0.06 1.49 7.53 -52.49 -0.40 1.09 16 9 C 0.25 5.55 0.85 -89.93 -0.08 5.47 16 10 O -0.59 -13.89 13.09 -35.23 -0.46 -14.35 16 11 C -0.14 -2.86 5.69 -24.47 -0.14 -3.00 16 12 C 0.10 1.96 6.89 -2.41 -0.02 1.95 16 13 N -0.60 -11.08 3.32 -170.37 -0.57 -11.65 16 14 C 0.51 9.02 6.54 -10.98 -0.07 8.95 16 15 O -0.55 -10.91 15.58 5.56 0.09 -10.82 16 16 C 0.13 1.90 0.96 -91.60 -0.09 1.81 16 17 O -0.55 -8.20 11.75 -35.23 -0.41 -8.62 16 18 C -0.12 -1.53 5.72 -26.41 -0.15 -1.68 16 19 C -0.06 -0.67 7.46 37.82 0.28 -0.38 16 20 S -0.28 -3.58 23.26 -107.50 -2.50 -6.08 16 21 C -0.09 -1.23 6.32 37.67 0.24 -0.99 16 22 C 0.10 1.80 4.39 -3.06 -0.01 1.78 16 23 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 24 H 0.39 9.43 6.98 45.56 0.32 9.74 16 25 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 26 H 0.09 1.91 7.77 -51.93 -0.40 1.50 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 29 H 0.39 5.26 4.87 45.56 0.22 5.48 16 30 H 0.10 1.21 7.83 -51.93 -0.41 0.80 16 31 H 0.11 1.50 6.36 -51.93 -0.33 1.17 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.10 1.37 7.85 -51.93 -0.41 0.97 16 35 H 0.12 1.45 7.04 -51.93 -0.37 1.08 16 36 H 0.07 1.17 6.29 -51.93 -0.33 0.85 16 37 H 0.08 1.46 6.29 -51.93 -0.33 1.13 16 LS Contribution 304.57 15.07 4.59 4.59 Total: -1.00 -26.81 304.57 -7.77 -34.58 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -3.66 Total: 17.17 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -0.41 Total: 2.45 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.03 Total: -32.94 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.79 Total: -33.79 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.02 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -2.50 Total: -6.08 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -26.81 -7.77 -34.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846136.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.413 kcal (2) G-P(sol) polarization free energy of solvation -26.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds