Wall clock time and date at job start Wed Apr 15 2020 11:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00172 * 2 1 4 4 H 1.48495 * 109.47490 * 239.99904 * 3 2 1 5 5 H 1.48499 * 109.47038 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46813 * 119.99937 * 3 2 1 7 7 C 1.37882 * 119.99693 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99856 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99661 * 0.02562 * 7 2 1 10 10 O 1.42896 * 110.64619 * 56.85650 * 9 7 2 11 11 C 1.55155 * 110.71751 * 293.51406 * 9 7 2 12 12 C 1.55127 * 101.48819 * 205.97279 * 11 9 7 13 13 N 1.47432 * 104.72028 * 37.30121 * 12 11 9 14 14 C 1.34773 * 125.64947 * 155.82263 * 13 12 11 15 15 O 1.21280 * 120.00058 * 4.49366 * 14 13 12 16 16 C 1.50705 * 119.99621 * 184.50505 * 14 13 12 17 17 O 1.42892 * 108.70815 * 319.54647 * 16 14 13 18 18 C 1.52339 * 108.86367 * 201.08729 * 16 14 13 19 19 C 1.54262 * 112.47476 * 239.10759 * 18 16 14 20 20 S 1.83959 * 102.58131 * 335.54511 * 19 18 16 21 21 C 1.53980 * 108.74590 * 77.90015 * 16 14 13 22 22 C 1.47023 * 108.70162 * 335.54801 * 13 12 11 23 23 H 0.97007 * 119.99588 * 359.97438 * 1 2 3 24 24 H 0.96701 * 114.00020 * 303.13852 * 10 9 7 25 25 H 1.08998 * 111.01053 * 324.21788 * 11 9 7 26 26 H 1.09001 * 111.00398 * 88.02935 * 11 9 7 27 27 H 1.09001 * 110.49996 * 278.46012 * 12 11 9 28 28 H 1.08997 * 110.34784 * 156.05959 * 12 11 9 29 29 H 0.96701 * 113.99733 * 75.55276 * 17 16 14 30 30 H 1.08997 * 108.86374 * 118.36351 * 18 16 14 31 31 H 1.08997 * 108.87212 * 359.85666 * 18 16 14 32 32 H 1.09001 * 110.78381 * 93.81741 * 19 18 16 33 33 H 1.08999 * 110.78575 * 217.08099 * 19 18 16 34 34 H 1.08997 * 110.85983 * 27.20748 * 21 16 14 35 35 H 1.08997 * 110.78382 * 263.70320 * 21 16 14 36 36 H 1.09002 * 109.88030 * 120.70630 * 22 13 12 37 37 H 1.08997 * 109.88841 * 241.72008 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 0.3662 -2.5701 -1.1194 11 6 0.4745 -2.6846 1.3310 12 6 0.3764 -4.2303 1.4186 13 7 1.6647 -4.7178 0.8932 14 6 2.2298 -5.9076 1.1787 15 8 1.6339 -6.7137 1.8613 16 6 3.6022 -6.2362 0.6499 17 8 3.7015 -5.7607 -0.6940 18 6 3.7816 -7.7490 0.6517 19 6 4.9767 -8.2000 1.5166 20 16 6.0502 -6.7062 1.5270 21 6 4.6516 -5.5112 1.5126 22 6 2.2279 -3.6938 0.0011 23 1 -0.4850 0.8401 0.0004 24 1 -0.2684 -1.8419 -1.1662 25 1 1.0364 -2.2772 2.1714 26 1 -0.5164 -2.2342 1.2712 27 1 -0.4466 -4.5960 0.8044 28 1 0.2461 -4.5437 2.4544 29 1 3.8128 -4.8027 -0.7650 30 1 3.9405 -8.0863 -0.3725 31 1 2.8730 -8.2113 1.0374 32 1 4.6510 -8.4495 2.5264 33 1 5.4894 -9.0452 1.0573 34 1 4.2756 -5.3438 2.5219 35 1 4.9507 -4.5712 1.0491 36 1 3.2026 -3.3754 0.3710 37 1 2.3273 -4.0948 -1.0075 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846136.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:17 Heat of formation + Delta-G solvation = -140.421877 kcal Electronic energy + Delta-G solvation = -22039.460557 eV Core-core repulsion = 18714.449260 eV Total energy + Delta-G solvation = -3325.011296 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.85043 -39.40751 -38.35762 -36.21670 -34.55159 -34.12323 -31.80538 -30.43040 -30.07029 -27.28682 -26.57344 -24.45984 -22.12042 -21.78911 -20.88308 -19.24445 -18.55827 -17.96697 -17.62737 -17.29578 -16.92759 -16.44324 -15.93653 -15.76496 -15.53977 -14.94876 -14.79823 -14.30401 -13.94747 -13.86570 -13.70168 -13.48244 -13.28361 -13.12945 -13.04345 -12.88353 -12.63286 -12.43927 -12.36917 -12.24315 -12.15225 -12.00739 -11.49361 -11.22708 -10.65566 -10.42902 -10.14140 -9.74500 -8.82223 -8.23520 -6.38003 0.65586 1.02612 1.37551 1.46609 1.49419 1.54895 1.83660 2.40444 2.94716 3.02456 3.14525 3.20892 3.59662 3.76645 3.92359 4.02065 4.04339 4.09168 4.16753 4.29492 4.37651 4.52229 4.61538 4.69085 4.75828 4.85841 4.92117 5.10650 5.17240 5.40902 5.46365 5.77251 6.01344 6.30060 6.39459 6.67366 6.86185 7.33021 7.43568 8.82694 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.024036 B = 0.005115 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.615709 B = 5472.619230 C = 6131.049743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.034 3.966 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.556 4.556 8 H 0.070 0.930 9 C 0.235 3.765 10 O -0.595 6.595 11 C -0.127 4.127 12 C 0.108 3.892 13 N -0.602 5.602 14 C 0.504 3.496 15 O -0.570 6.570 16 C 0.135 3.865 17 O -0.551 6.551 18 C -0.118 4.118 19 C -0.051 4.051 20 S -0.291 6.291 21 C -0.091 4.091 22 C 0.106 3.894 23 H 0.271 0.729 24 H 0.382 0.618 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.391 0.609 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.100 0.900 35 H 0.130 0.870 36 H 0.092 0.908 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.723 -9.425 2.345 12.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.167 4.167 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.594 4.594 8 H 0.088 0.912 9 C 0.195 3.805 10 O -0.405 6.405 11 C -0.166 4.166 12 C -0.014 4.014 13 N -0.334 5.334 14 C 0.291 3.709 15 O -0.451 6.451 16 C 0.089 3.911 17 O -0.363 6.363 18 C -0.157 4.157 19 C -0.198 4.198 20 S -0.065 6.065 21 C -0.240 4.240 22 C -0.015 4.015 23 H 0.080 0.920 24 H 0.234 0.766 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.246 0.754 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.154 0.846 34 H 0.119 0.881 35 H 0.148 0.852 36 H 0.110 0.890 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.809 -10.797 2.467 14.151 hybrid contribution -1.599 2.215 0.251 2.743 sum 7.210 -8.582 2.718 11.534 Atomic orbital electron populations 1.69650 1.06927 1.28469 1.50228 1.25631 0.95695 1.02218 0.93159 0.85589 0.78358 0.78782 0.78767 1.19797 1.21295 1.19711 1.21780 0.94031 0.91051 1.52581 0.91162 1.19606 0.86575 0.91281 0.83023 1.86083 1.51661 1.53234 1.49503 1.23182 1.01791 0.91435 1.00214 1.22333 0.85248 0.95378 0.98490 1.48656 1.22263 1.16453 1.45988 1.21431 0.89000 0.80045 0.80449 1.90626 1.64953 1.47808 1.41708 1.21876 0.89307 0.96450 0.83478 1.86702 1.95234 1.30309 1.24047 1.21958 1.00614 0.89669 1.03456 1.24262 0.94521 0.97145 1.03899 1.87994 1.15291 1.05089 1.98095 1.24851 0.94006 1.01174 1.03956 1.22402 0.97723 0.87773 0.93639 0.91990 0.76619 0.91844 0.91170 0.92554 0.91019 0.75410 0.87901 0.88511 0.87878 0.84566 0.88119 0.85197 0.88984 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.85 10.70 21.45 0.23 -44.62 16 2 C 0.03 1.62 5.28 84.66 0.45 2.06 16 3 Si 0.96 38.50 29.54 68.60 2.03 40.53 16 4 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.29 -11.56 7.11 99.48 0.71 -10.86 16 6 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.56 -26.02 8.21 25.60 0.21 -25.81 16 8 H 0.07 3.13 7.53 -2.91 -0.02 3.11 16 9 C 0.24 10.28 0.85 -10.35 -0.01 10.27 16 10 O -0.59 -28.37 13.09 -148.98 -1.95 -30.32 16 11 C -0.13 -5.31 5.69 32.06 0.18 -5.13 16 12 C 0.11 4.10 6.89 86.93 0.60 4.70 16 13 N -0.60 -21.67 3.32 -811.33 -2.70 -24.37 16 14 C 0.50 17.31 6.54 87.66 0.57 17.88 16 15 O -0.57 -22.20 15.58 -3.03 -0.05 -22.25 16 16 C 0.13 3.71 0.96 -11.43 -0.01 3.69 16 17 O -0.55 -15.45 11.75 -148.98 -1.75 -17.20 16 18 C -0.12 -2.82 5.72 30.80 0.18 -2.64 16 19 C -0.05 -0.96 7.46 72.41 0.54 -0.42 16 20 S -0.29 -6.77 23.26 -56.49 -1.31 -8.09 16 21 C -0.09 -2.22 6.32 72.31 0.46 -1.76 16 22 C 0.11 3.82 4.39 86.73 0.38 4.21 16 23 H 0.27 12.84 8.31 -92.70 -0.77 12.07 16 24 H 0.38 18.90 6.98 -74.06 -0.52 18.39 16 25 H 0.06 2.66 8.04 -2.39 -0.02 2.64 16 26 H 0.07 3.14 7.77 -2.39 -0.02 3.12 16 27 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.07 2.59 8.08 -2.39 -0.02 2.57 16 29 H 0.39 9.84 4.87 -74.06 -0.36 9.47 16 30 H 0.10 2.32 7.83 -2.39 -0.02 2.31 16 31 H 0.10 2.56 6.36 -2.39 -0.02 2.55 16 32 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.10 2.51 7.85 -2.39 -0.02 2.49 16 35 H 0.13 2.84 7.04 -2.39 -0.02 2.83 16 36 H 0.09 2.89 6.29 -2.39 -0.02 2.87 16 37 H 0.08 2.90 6.29 -2.39 -0.02 2.89 16 Total: -1.00 -55.38 304.57 -1.72 -57.10 By element: Atomic # 1 Polarization: 41.93 SS G_CDS: 0.24 Total: 42.16 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 3.55 Total: 7.06 kcal Atomic # 7 Polarization: -66.52 SS G_CDS: -2.47 Total: -68.98 kcal Atomic # 8 Polarization: -66.02 SS G_CDS: -3.75 Total: -69.77 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Atomic # 16 Polarization: -6.77 SS G_CDS: -1.31 Total: -8.09 kcal Total: -55.38 -1.72 -57.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846136.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.324 kcal (2) G-P(sol) polarization free energy of solvation -55.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds