Wall clock time and date at job start Wed Apr 15 2020 11:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 120.00060 * 2 1 4 4 H 1.48501 * 109.47255 * 269.99952 * 3 2 1 5 5 H 1.48498 * 109.47033 * 29.99830 * 3 2 1 6 6 H 1.48502 * 109.46956 * 149.99947 * 3 2 1 7 7 C 1.38802 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99829 * 0.02562 * 7 2 1 9 9 S 1.76200 * 120.00176 * 180.02562 * 7 2 1 10 10 C 1.81006 * 99.99857 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46712 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00470 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99784 * 179.97438 * 11 10 9 14 14 C 1.46917 * 120.63260 * 179.97438 * 13 11 10 15 15 C 1.53200 * 108.78790 * 126.19383 * 14 13 11 16 16 C 1.52990 * 109.32751 * 54.40055 * 15 14 13 17 17 C 1.52993 * 109.91036 * 299.08393 * 16 15 14 18 18 C 1.46932 * 120.63046 * 0.02562 * 13 11 10 19 19 O 1.43308 * 109.64907 * 59.66831 * 16 15 14 20 20 C 1.44213 * 107.26821 * 120.31581 * 19 16 15 21 21 C 1.54916 * 103.23476 * 21.32625 * 20 19 16 22 22 O 1.43712 * 109.39297 * 178.96909 * 16 15 14 23 23 H 0.97005 * 119.99870 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47211 * 59.99925 * 10 9 7 25 25 H 1.09004 * 109.46881 * 299.99696 * 10 9 7 26 26 H 1.09005 * 109.58271 * 6.40786 * 14 13 11 27 27 H 1.09001 * 109.59077 * 245.98631 * 14 13 11 28 28 H 1.08998 * 109.49302 * 294.44897 * 15 14 13 29 29 H 1.08994 * 109.52132 * 174.37316 * 15 14 13 30 30 H 1.09005 * 109.49303 * 180.88737 * 17 16 15 31 31 H 1.09000 * 109.49753 * 300.97606 * 17 16 15 32 32 H 1.09005 * 109.58193 * 353.59489 * 18 13 11 33 33 H 1.08990 * 109.59068 * 114.02936 * 18 13 11 34 34 H 1.09002 * 110.69392 * 139.81056 * 20 19 16 35 35 H 1.08997 * 110.69824 * 262.84478 * 20 19 16 36 36 H 1.08998 * 110.98080 * 82.66482 * 21 20 19 37 37 H 1.09001 * 110.97996 * 206.44723 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9846 0.0009 11 6 5.5730 -3.2325 0.0021 12 8 6.3440 -2.2963 0.0035 13 7 6.0457 -4.4947 0.0026 14 6 7.4920 -4.7524 0.0032 15 6 7.8272 -5.6818 1.1741 16 6 6.9606 -6.9396 1.0862 17 6 5.4810 -6.5600 1.1733 18 6 5.1242 -5.6391 0.0015 19 8 7.2129 -7.6130 -0.1533 20 6 7.6900 -8.9355 0.1674 21 6 7.1773 -9.1569 1.6124 22 8 7.2909 -7.8233 2.1704 23 1 -0.4850 0.8401 -0.0004 24 1 3.6440 -3.4314 -0.8893 25 1 3.6433 -3.4318 0.8907 26 1 8.0307 -3.8117 0.1177 27 1 7.7789 -5.2282 -0.9346 28 1 7.6284 -5.1681 2.1146 29 1 8.8796 -5.9612 1.1276 30 1 4.8707 -7.4619 1.1259 31 1 5.2930 -6.0420 2.1137 32 1 4.1000 -5.2836 0.1149 33 1 5.2218 -6.1860 -0.9362 34 1 7.2623 -9.6742 -0.5105 35 1 8.7790 -8.9704 0.1355 36 1 6.1398 -9.4909 1.6115 37 1 7.8124 -9.8625 2.1480 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701245787.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:22 Heat of formation + Delta-G solvation = -119.531078 kcal Electronic energy + Delta-G solvation = -21023.759367 eV Core-core repulsion = 17699.653964 eV Total energy + Delta-G solvation = -3324.105403 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.03 seconds Orbital eigenvalues (eV) -41.20497 -39.44843 -36.51148 -35.30899 -32.55076 -32.42264 -31.50767 -29.56962 -28.58614 -25.61966 -24.50283 -23.89256 -23.26823 -21.02185 -19.17023 -17.79448 -17.56067 -16.98665 -16.51288 -15.95630 -15.68643 -15.43312 -14.94507 -14.69458 -14.23368 -14.04517 -13.78590 -13.72514 -13.33252 -13.13205 -12.78110 -12.58599 -12.48003 -12.25539 -11.89208 -11.76364 -11.47196 -11.24533 -11.14854 -10.99725 -10.58502 -10.54582 -9.84963 -9.84458 -9.42880 -8.99306 -8.61842 -8.47480 -6.90682 -6.27983 -3.99548 2.71901 2.89900 3.06782 3.19272 3.34457 3.51927 3.56045 3.63582 4.15622 4.33845 4.36754 4.38012 4.53066 4.65254 4.76379 4.82155 4.93027 5.08125 5.11194 5.12703 5.17016 5.22809 5.33557 5.36431 5.50681 5.59750 5.63624 5.75465 5.81999 5.83648 5.99076 6.01702 6.56441 6.75573 7.48100 7.95074 8.42314 8.45259 9.18372 10.81245 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.040037 B = 0.003574 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.181888 B = 7832.759883 C = 8214.870499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.122 4.122 11 C 0.534 3.466 12 O -0.519 6.519 13 N -0.619 5.619 14 C 0.121 3.879 15 C -0.133 4.133 16 C 0.260 3.740 17 C -0.152 4.152 18 C 0.115 3.885 19 O -0.371 6.371 20 C 0.020 3.980 21 C 0.015 3.985 22 O -0.372 6.372 23 H 0.271 0.729 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.827 -20.700 1.675 25.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.272 4.272 11 C 0.322 3.678 12 O -0.394 6.394 13 N -0.355 5.355 14 C -0.002 4.002 15 C -0.172 4.172 16 C 0.183 3.817 17 C -0.191 4.191 18 C -0.009 4.009 19 O -0.293 6.293 20 C -0.057 4.057 21 C -0.062 4.062 22 O -0.292 6.292 23 H 0.081 0.919 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.117 0.883 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 15.819 -19.032 1.689 24.805 hybrid contribution -0.907 -0.738 0.046 1.170 sum 14.911 -19.770 1.735 24.823 Atomic orbital electron populations 1.69939 1.05921 1.27758 1.48130 1.24708 0.94443 0.98963 0.93171 0.86735 0.81915 0.83266 0.79944 1.19203 1.19959 1.15896 1.22313 0.88258 0.97523 1.58736 0.89403 1.84796 1.09277 1.00153 1.97405 1.23316 0.94122 1.04206 1.05595 1.20297 0.90655 0.81779 0.75027 1.90683 1.58738 1.41657 1.48286 1.48089 1.06528 1.05674 1.75211 1.21421 0.81371 0.99913 0.97460 1.22212 1.00020 0.94147 1.00826 1.23302 0.94372 0.89186 0.74838 1.22534 0.94795 1.00917 1.00826 1.21641 0.94319 0.86759 0.98170 1.88923 1.86159 1.25985 1.28190 1.24180 1.00218 0.85106 0.96167 1.24414 1.02297 0.86004 0.93449 1.89312 1.90316 1.15660 1.33935 0.91950 0.88491 0.88499 0.88344 0.90894 0.89615 0.89772 0.89987 0.89351 0.88701 0.90490 0.88269 0.90664 0.90551 0.87396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.66 13.97 55.49 0.78 -25.88 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.91 27.74 -169.99 -4.72 17.20 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 7 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 8 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 9 S -0.14 -3.66 18.55 -107.50 -1.99 -5.66 16 10 C -0.12 -2.41 4.50 36.00 0.16 -2.25 16 11 C 0.53 9.94 7.72 -10.99 -0.08 9.86 16 12 O -0.52 -11.46 15.27 5.56 0.08 -11.37 16 13 N -0.62 -8.88 2.97 -172.74 -0.51 -9.39 16 14 C 0.12 1.53 6.21 -3.71 -0.02 1.50 16 15 C -0.13 -1.45 5.49 -26.63 -0.15 -1.60 16 16 C 0.26 2.69 1.02 -26.74 -0.03 2.67 16 17 C -0.15 -1.56 5.45 -26.61 -0.14 -1.70 16 18 C 0.11 1.32 6.12 -3.68 -0.02 1.30 16 19 O -0.37 -3.68 9.71 -59.04 -0.57 -4.26 16 20 C 0.02 0.13 8.07 38.17 0.31 0.44 16 21 C 0.01 0.09 7.94 38.17 0.30 0.40 16 22 O -0.37 -3.79 10.98 -59.04 -0.65 -4.44 16 23 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 24 H 0.10 1.79 7.94 -51.92 -0.41 1.38 16 25 H 0.10 1.78 7.70 -51.91 -0.40 1.38 16 26 H 0.10 1.36 7.00 -51.93 -0.36 1.00 16 27 H 0.07 0.86 7.85 -51.93 -0.41 0.45 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.08 5.93 -51.93 -0.31 0.77 16 33 H 0.08 0.83 7.84 -51.93 -0.41 0.42 16 34 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 313.92 15.07 4.73 4.73 Total: -1.00 -34.51 313.92 -7.57 -42.08 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -5.26 Total: -1.59 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 0.54 Total: -1.43 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.26 Total: -35.28 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -1.14 Total: -20.07 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.72 Total: 17.20 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.51 -7.57 -42.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701245787.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.448 kcal (2) G-P(sol) polarization free energy of solvation -34.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.03 seconds