Wall clock time and date at job start Wed Apr 15 2020 11:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 120.00060 * 2 1 4 4 H 1.48501 * 109.47255 * 269.99952 * 3 2 1 5 5 H 1.48498 * 109.47033 * 29.99830 * 3 2 1 6 6 H 1.48502 * 109.46956 * 149.99947 * 3 2 1 7 7 C 1.38802 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99829 * 0.02562 * 7 2 1 9 9 S 1.76200 * 120.00176 * 180.02562 * 7 2 1 10 10 C 1.81006 * 99.99857 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46712 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00470 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99784 * 179.97438 * 11 10 9 14 14 C 1.46917 * 120.63260 * 179.97438 * 13 11 10 15 15 C 1.53200 * 108.78790 * 126.19383 * 14 13 11 16 16 C 1.52990 * 109.32751 * 54.40055 * 15 14 13 17 17 C 1.52993 * 109.91036 * 299.08393 * 16 15 14 18 18 C 1.46932 * 120.63046 * 0.02562 * 13 11 10 19 19 O 1.43308 * 109.64907 * 59.66831 * 16 15 14 20 20 C 1.44213 * 107.26821 * 120.31581 * 19 16 15 21 21 C 1.54916 * 103.23476 * 21.32625 * 20 19 16 22 22 O 1.43712 * 109.39297 * 178.96909 * 16 15 14 23 23 H 0.97005 * 119.99870 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47211 * 59.99925 * 10 9 7 25 25 H 1.09004 * 109.46881 * 299.99696 * 10 9 7 26 26 H 1.09005 * 109.58271 * 6.40786 * 14 13 11 27 27 H 1.09001 * 109.59077 * 245.98631 * 14 13 11 28 28 H 1.08998 * 109.49302 * 294.44897 * 15 14 13 29 29 H 1.08994 * 109.52132 * 174.37316 * 15 14 13 30 30 H 1.09005 * 109.49303 * 180.88737 * 17 16 15 31 31 H 1.09000 * 109.49753 * 300.97606 * 17 16 15 32 32 H 1.09005 * 109.58193 * 353.59489 * 18 13 11 33 33 H 1.08990 * 109.59068 * 114.02936 * 18 13 11 34 34 H 1.09002 * 110.69392 * 139.81056 * 20 19 16 35 35 H 1.08997 * 110.69824 * 262.84478 * 20 19 16 36 36 H 1.08998 * 110.98080 * 82.66482 * 21 20 19 37 37 H 1.09001 * 110.97996 * 206.44723 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9846 0.0009 11 6 5.5730 -3.2325 0.0021 12 8 6.3440 -2.2963 0.0035 13 7 6.0457 -4.4947 0.0026 14 6 7.4920 -4.7524 0.0032 15 6 7.8272 -5.6818 1.1741 16 6 6.9606 -6.9396 1.0862 17 6 5.4810 -6.5600 1.1733 18 6 5.1242 -5.6391 0.0015 19 8 7.2129 -7.6130 -0.1533 20 6 7.6900 -8.9355 0.1674 21 6 7.1773 -9.1569 1.6124 22 8 7.2909 -7.8233 2.1704 23 1 -0.4850 0.8401 -0.0004 24 1 3.6440 -3.4314 -0.8893 25 1 3.6433 -3.4318 0.8907 26 1 8.0307 -3.8117 0.1177 27 1 7.7789 -5.2282 -0.9346 28 1 7.6284 -5.1681 2.1146 29 1 8.8796 -5.9612 1.1276 30 1 4.8707 -7.4619 1.1259 31 1 5.2930 -6.0420 2.1137 32 1 4.1000 -5.2836 0.1149 33 1 5.2218 -6.1860 -0.9362 34 1 7.2623 -9.6742 -0.5105 35 1 8.7790 -8.9704 0.1355 36 1 6.1398 -9.4909 1.6115 37 1 7.8124 -9.8625 2.1480 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701245787.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:21 Heat of formation + Delta-G solvation = -143.628666 kcal Electronic energy + Delta-G solvation = -21024.804317 eV Core-core repulsion = 17699.653964 eV Total energy + Delta-G solvation = -3325.150353 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.99239 -40.69378 -37.68079 -35.99004 -34.67370 -33.60072 -32.44983 -30.74495 -29.50856 -27.85850 -25.51445 -24.68812 -23.95641 -22.05317 -20.43295 -19.60571 -18.50689 -17.99361 -17.37680 -17.19427 -16.92742 -16.72907 -16.61143 -15.82993 -15.35372 -15.11859 -14.97044 -14.85955 -14.55666 -14.42967 -13.99556 -13.67134 -13.47078 -13.32598 -13.21806 -13.00936 -12.88189 -12.68097 -12.56561 -12.31363 -11.95380 -11.85841 -11.17074 -11.11219 -11.00540 -10.58586 -10.47273 -9.82277 -9.00706 -8.51551 -6.22636 0.96451 1.31578 1.45565 1.48126 1.53591 2.01566 2.25259 2.41449 2.67076 2.86787 2.89017 3.42330 3.57136 3.67229 3.77780 3.92658 4.09045 4.14871 4.18538 4.21521 4.24567 4.36787 4.42131 4.53004 4.66505 4.68844 4.72619 4.78682 4.83136 4.94129 5.02042 5.12222 5.45134 5.70924 6.10135 6.11391 6.19941 6.93708 7.03475 8.60822 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.040037 B = 0.003574 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.181888 B = 7832.759883 C = 8214.870499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.047 3.953 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.528 4.528 8 H 0.063 0.937 9 S -0.176 6.176 10 C -0.107 4.107 11 C 0.536 3.464 12 O -0.561 6.561 13 N -0.607 5.607 14 C 0.122 3.878 15 C -0.129 4.129 16 C 0.262 3.738 17 C -0.149 4.149 18 C 0.110 3.890 19 O -0.386 6.386 20 C 0.015 3.985 21 C 0.010 3.990 22 O -0.391 6.391 23 H 0.277 0.723 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.926 -22.501 1.614 27.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.051 5.949 10 C -0.258 4.258 11 C 0.323 3.677 12 O -0.440 6.440 13 N -0.341 5.341 14 C 0.000 4.000 15 C -0.168 4.168 16 C 0.185 3.815 17 C -0.187 4.187 18 C -0.012 4.012 19 O -0.308 6.308 20 C -0.061 4.061 21 C -0.065 4.065 22 O -0.312 6.312 23 H 0.087 0.913 24 H 0.131 0.869 25 H 0.130 0.870 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.139 0.861 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 16.917 -20.897 1.631 26.935 hybrid contribution -1.202 -0.434 0.055 1.279 sum 15.715 -21.331 1.685 26.548 Atomic orbital electron populations 1.70012 1.07265 1.29030 1.49137 1.25540 0.95257 1.02194 0.92869 0.85883 0.80688 0.79669 0.80236 1.18675 1.18279 1.16132 1.22444 0.90085 0.96746 1.58279 0.91843 1.84727 1.06623 1.06013 1.97564 1.23287 0.95718 0.99623 1.07131 1.20031 0.89638 0.82797 0.75205 1.90668 1.59256 1.43254 1.50799 1.48099 1.07929 1.04953 1.73092 1.21517 0.79851 0.99724 0.98945 1.22144 1.01169 0.94212 0.99274 1.23142 0.93869 0.89119 0.75394 1.22499 0.95443 1.01226 0.99547 1.21872 0.93727 0.85980 0.99646 1.88900 1.86396 1.27545 1.27920 1.24427 1.00911 0.84065 0.96685 1.24688 1.03571 0.84760 0.93508 1.89294 1.90397 1.17299 1.34201 0.91341 0.86923 0.86959 0.89936 0.89628 0.90716 0.88392 0.87951 0.90268 0.88549 0.89029 0.86102 0.89914 0.89525 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.92 13.97 21.65 0.30 -55.62 16 2 C 0.05 2.76 5.50 84.86 0.47 3.23 16 3 Si 0.91 45.28 27.74 68.60 1.90 47.19 16 4 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.24 -11.79 6.74 99.48 0.67 -11.12 16 7 C -0.53 -30.89 10.04 67.95 0.68 -30.20 16 8 H 0.06 3.89 8.03 -2.91 -0.02 3.87 16 9 S -0.18 -9.03 18.55 -56.49 -1.05 -10.08 16 10 C -0.11 -4.16 4.50 71.23 0.32 -3.84 16 11 C 0.54 19.61 7.72 87.66 0.68 20.29 16 12 O -0.56 -24.88 15.27 -3.02 -0.05 -24.93 16 13 N -0.61 -16.65 2.97 -818.80 -2.43 -19.08 16 14 C 0.12 2.93 6.21 86.37 0.54 3.47 16 15 C -0.13 -2.64 5.49 30.66 0.17 -2.47 16 16 C 0.26 4.85 1.02 30.59 0.03 4.88 16 17 C -0.15 -2.72 5.45 30.67 0.17 -2.55 16 18 C 0.11 2.30 6.12 86.38 0.53 2.83 16 19 O -0.39 -6.56 9.71 -126.22 -1.23 -7.79 16 20 C 0.01 0.15 8.07 72.64 0.59 0.73 16 21 C 0.01 0.10 7.94 72.64 0.58 0.68 16 22 O -0.39 -7.06 10.98 -126.22 -1.39 -8.45 16 23 H 0.28 15.62 8.31 -92.70 -0.77 14.85 16 24 H 0.11 4.03 7.94 -2.40 -0.02 4.01 16 25 H 0.11 4.02 7.70 -2.39 -0.02 4.00 16 26 H 0.08 2.28 7.00 -2.38 -0.02 2.26 16 27 H 0.09 1.87 7.85 -2.39 -0.02 1.85 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.10 1.99 5.93 -2.38 -0.01 1.98 16 33 H 0.09 1.72 7.84 -2.39 -0.02 1.70 16 34 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -74.41 313.92 1.84 -72.58 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 1.03 Total: 9.13 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 4.74 Total: -2.96 kcal Atomic # 7 Polarization: -72.57 SS G_CDS: -2.13 Total: -74.69 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -2.66 Total: -41.16 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.19 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.05 Total: -10.08 kcal Total: -74.41 1.84 -72.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701245787.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.053 kcal (2) G-P(sol) polarization free energy of solvation -74.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds