Wall clock time and date at job start Wed Apr 15 2020 11:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86809 * 119.99721 * 2 1 4 4 H 1.48493 * 109.46985 * 239.99344 * 3 2 1 5 5 H 1.48496 * 109.47161 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46737 * 119.99703 * 3 2 1 7 7 C 1.38796 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99667 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00072 * 0.02562 * 7 2 1 10 10 C 1.80995 * 99.99960 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47014 * 179.97438 * 10 9 7 12 12 O 1.20818 * 120.00268 * 0.02562 * 11 10 9 13 13 O 1.34236 * 119.99921 * 180.02562 * 11 10 9 14 14 C 1.45202 * 116.99921 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.46834 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.46964 * 179.97438 * 15 14 13 17 17 N 1.46498 * 109.47601 * 180.02562 * 16 15 14 18 18 C 1.46768 * 124.34879 * 89.99607 * 17 16 15 19 19 C 1.54480 * 105.55098 * 197.08340 * 18 17 16 20 20 C 1.54631 * 101.76472 * 334.54015 * 19 18 17 21 21 C 1.34621 * 124.47196 * 270.02849 * 17 16 15 22 22 O 1.21286 * 124.90539 * 359.55259 * 21 17 16 23 23 H 0.97006 * 119.99835 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47186 * 60.00287 * 10 9 7 25 25 H 1.08995 * 109.47405 * 300.00331 * 10 9 7 26 26 H 1.09001 * 109.46973 * 59.99957 * 14 13 11 27 27 H 1.08992 * 109.47132 * 300.00036 * 14 13 11 28 28 H 1.08994 * 109.47345 * 60.00362 * 15 14 13 29 29 H 1.08998 * 109.47760 * 299.99768 * 15 14 13 30 30 H 1.09002 * 109.47341 * 60.00167 * 16 15 14 31 31 H 1.08998 * 109.47560 * 300.00047 * 16 15 14 32 32 H 1.09002 * 110.24468 * 78.03845 * 18 17 16 33 33 H 1.09002 * 110.24463 * 316.12602 * 18 17 16 34 34 H 1.08995 * 110.97082 * 92.66028 * 19 18 17 35 35 H 1.09001 * 110.96924 * 216.42557 * 19 18 17 36 36 H 1.09000 * 110.48694 * 143.47575 * 20 19 18 37 37 H 1.08994 * 110.49106 * 266.12244 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6179 0.0000 4 1 3.1041 1.6965 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9874 -5.3026 0.0012 12 8 0.7957 -5.5015 0.0011 13 8 2.8407 -6.3388 0.0018 14 6 2.2611 -7.6701 0.0018 15 6 3.3801 -8.7135 0.0019 16 6 2.7693 -10.1163 0.0026 17 7 3.8407 -11.1155 0.0033 18 6 4.4461 -11.6796 1.2155 19 6 5.7742 -12.3206 0.7553 20 6 5.4782 -12.6265 -0.7313 21 6 4.3985 -11.6354 -1.1061 22 8 4.0814 -11.3499 -2.2415 23 1 -0.4850 0.8401 -0.0004 24 1 3.1245 -3.7313 0.8906 25 1 3.1245 -3.7312 -0.8894 26 1 1.6453 -7.7983 -0.8884 27 1 1.6445 -7.7979 0.8915 28 1 3.9961 -8.5855 0.8919 29 1 3.9963 -8.5856 -0.8880 30 1 2.1529 -10.2447 -0.8872 31 1 2.1533 -10.2441 0.8927 32 1 3.7914 -12.4368 1.6468 33 1 4.6400 -10.8908 1.9424 34 1 6.6009 -11.6168 0.8515 35 1 5.9775 -13.2371 1.3092 36 1 6.3694 -12.4676 -1.3383 37 1 5.1148 -13.6477 -0.8456 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733436099.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:23 Heat of formation + Delta-G solvation = -129.671423 kcal Electronic energy + Delta-G solvation = -19384.357812 eV Core-core repulsion = 16059.812690 eV Total energy + Delta-G solvation = -3324.545122 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.71589 -39.99054 -36.85987 -36.37121 -34.58729 -32.48437 -31.36965 -29.58440 -27.98194 -26.09374 -25.50471 -22.47570 -22.11323 -21.01087 -19.69503 -17.92129 -17.36505 -17.09594 -16.75227 -16.57498 -15.75181 -15.56709 -14.84552 -14.70216 -14.21710 -14.16271 -14.09488 -13.73217 -13.19334 -13.08867 -12.84309 -12.66179 -12.53860 -12.11090 -11.92902 -11.58971 -11.48852 -11.28412 -11.09943 -11.06077 -10.82508 -10.39659 -10.13426 -10.02611 -9.91437 -9.13640 -9.10684 -8.36449 -6.60388 -6.27032 -3.99890 2.20452 2.46641 2.66441 2.77371 3.22028 3.24284 3.27659 3.52930 3.91191 4.00232 4.15036 4.33067 4.53009 4.61858 4.71758 4.80057 4.97604 5.03485 5.07509 5.08696 5.14942 5.22139 5.27656 5.34249 5.35727 5.48438 5.57739 5.72168 5.79009 5.86421 6.08339 6.14713 6.69484 6.72696 7.55165 7.81531 8.17095 8.30270 9.18217 10.80394 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.043567 B = 0.002299 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.532694 B =12175.565328 C =12355.407836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.922 3.078 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.076 0.924 9 S -0.059 6.059 10 C -0.129 4.129 11 C 0.479 3.521 12 O -0.488 6.488 13 O -0.361 6.361 14 C 0.069 3.931 15 C -0.136 4.136 16 C 0.129 3.871 17 N -0.620 5.620 18 C 0.099 3.901 19 C -0.133 4.133 20 C -0.155 4.155 21 C 0.514 3.486 22 O -0.528 6.528 23 H 0.270 0.730 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.475 -25.265 4.225 28.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.748 3.252 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.685 4.685 8 H 0.094 0.906 9 S 0.168 5.832 10 C -0.277 4.277 11 C 0.321 3.679 12 O -0.374 6.374 13 O -0.279 6.279 14 C -0.006 4.006 15 C -0.174 4.174 16 C 0.007 3.993 17 N -0.355 5.355 18 C -0.024 4.024 19 C -0.170 4.170 20 C -0.195 4.195 21 C 0.302 3.698 22 O -0.404 6.404 23 H 0.080 0.920 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.121 0.879 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.581 -25.252 3.621 27.250 hybrid contribution 1.787 1.227 0.116 2.171 sum 11.368 -24.025 3.737 26.841 Atomic orbital electron populations 1.70004 1.05984 1.27745 1.46515 1.25008 0.95075 0.99114 0.94334 0.86171 0.79198 0.80932 0.78907 1.19834 1.20773 1.19841 1.22801 0.94994 0.91172 1.59491 0.90633 1.85409 1.04379 0.96555 1.96889 1.23297 1.06964 0.90922 1.06468 1.23304 0.85180 0.87093 0.72356 1.90664 1.16935 1.85659 1.44103 1.86497 1.41310 1.15263 1.84863 1.22798 0.95662 0.79255 1.02858 1.21915 0.98577 0.92634 1.04306 1.21227 0.88387 0.85721 1.03945 1.48321 1.38047 1.41717 1.07421 1.22125 0.94260 0.98443 0.87527 1.22607 0.97214 1.02114 0.95100 1.22335 0.99310 1.00095 0.97805 1.21052 0.82865 0.81506 0.84387 1.90758 1.65317 1.63281 1.21053 0.92011 0.87935 0.87902 0.91016 0.91090 0.90517 0.90318 0.89413 0.89701 0.90868 0.90076 0.89799 0.89042 0.87944 0.87787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.88 13.22 55.49 0.73 -25.15 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16 8 H 0.08 2.01 7.80 -52.48 -0.41 1.60 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.13 -2.66 6.27 36.01 0.23 -2.43 16 11 C 0.48 9.36 7.98 36.01 0.29 9.65 16 12 O -0.49 -10.84 15.61 -18.74 -0.29 -11.13 16 13 O -0.36 -5.85 10.22 -39.27 -0.40 -6.26 16 14 C 0.07 0.88 5.47 37.15 0.20 1.08 16 15 C -0.14 -1.35 5.92 -26.73 -0.16 -1.51 16 16 C 0.13 1.08 5.94 -4.04 -0.02 1.06 16 17 N -0.62 -4.95 2.94 -172.35 -0.51 -5.46 16 18 C 0.10 0.44 7.34 -3.12 -0.02 0.41 16 19 C -0.13 -0.43 7.18 -25.10 -0.18 -0.61 16 20 C -0.16 -0.85 6.86 -26.74 -0.18 -1.03 16 21 C 0.51 5.13 8.03 -10.77 -0.09 5.04 16 22 O -0.53 -7.77 17.60 5.55 0.10 -7.67 16 23 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.10 1.95 8.14 -51.91 -0.42 1.53 16 25 H 0.10 1.98 8.14 -51.92 -0.42 1.56 16 26 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 27 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.09 0.84 7.93 -51.93 -0.41 0.43 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 336.89 15.07 5.08 5.08 Total: -1.00 -35.69 336.89 -7.72 -43.41 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -5.45 Total: -4.07 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 0.26 Total: -1.18 kcal Atomic # 7 Polarization: -30.83 SS G_CDS: 0.23 Total: -30.60 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.60 Total: -25.06 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.69 -7.72 -43.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733436099.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.259 kcal (2) G-P(sol) polarization free energy of solvation -35.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds