Wall clock time and date at job start Wed Apr 15 2020 11:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86809 * 119.99721 * 2 1 4 4 H 1.48493 * 109.46985 * 239.99344 * 3 2 1 5 5 H 1.48496 * 109.47161 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46737 * 119.99703 * 3 2 1 7 7 C 1.38796 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99667 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00072 * 0.02562 * 7 2 1 10 10 C 1.80995 * 99.99960 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47014 * 179.97438 * 10 9 7 12 12 O 1.20818 * 120.00268 * 0.02562 * 11 10 9 13 13 O 1.34236 * 119.99921 * 180.02562 * 11 10 9 14 14 C 1.45202 * 116.99921 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.46834 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.46964 * 179.97438 * 15 14 13 17 17 N 1.46498 * 109.47601 * 180.02562 * 16 15 14 18 18 C 1.46768 * 124.34879 * 89.99607 * 17 16 15 19 19 C 1.54480 * 105.55098 * 197.08340 * 18 17 16 20 20 C 1.54631 * 101.76472 * 334.54015 * 19 18 17 21 21 C 1.34621 * 124.47196 * 270.02849 * 17 16 15 22 22 O 1.21286 * 124.90539 * 359.55259 * 21 17 16 23 23 H 0.97006 * 119.99835 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47186 * 60.00287 * 10 9 7 25 25 H 1.08995 * 109.47405 * 300.00331 * 10 9 7 26 26 H 1.09001 * 109.46973 * 59.99957 * 14 13 11 27 27 H 1.08992 * 109.47132 * 300.00036 * 14 13 11 28 28 H 1.08994 * 109.47345 * 60.00362 * 15 14 13 29 29 H 1.08998 * 109.47760 * 299.99768 * 15 14 13 30 30 H 1.09002 * 109.47341 * 60.00167 * 16 15 14 31 31 H 1.08998 * 109.47560 * 300.00047 * 16 15 14 32 32 H 1.09002 * 110.24468 * 78.03845 * 18 17 16 33 33 H 1.09002 * 110.24463 * 316.12602 * 18 17 16 34 34 H 1.08995 * 110.97082 * 92.66028 * 19 18 17 35 35 H 1.09001 * 110.96924 * 216.42557 * 19 18 17 36 36 H 1.09000 * 110.48694 * 143.47575 * 20 19 18 37 37 H 1.08994 * 110.49106 * 266.12244 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6179 0.0000 4 1 3.1041 1.6965 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9874 -5.3026 0.0012 12 8 0.7957 -5.5015 0.0011 13 8 2.8407 -6.3388 0.0018 14 6 2.2611 -7.6701 0.0018 15 6 3.3801 -8.7135 0.0019 16 6 2.7693 -10.1163 0.0026 17 7 3.8407 -11.1155 0.0033 18 6 4.4461 -11.6796 1.2155 19 6 5.7742 -12.3206 0.7553 20 6 5.4782 -12.6265 -0.7313 21 6 4.3985 -11.6354 -1.1061 22 8 4.0814 -11.3499 -2.2415 23 1 -0.4850 0.8401 -0.0004 24 1 3.1245 -3.7313 0.8906 25 1 3.1245 -3.7312 -0.8894 26 1 1.6453 -7.7983 -0.8884 27 1 1.6445 -7.7979 0.8915 28 1 3.9961 -8.5855 0.8919 29 1 3.9963 -8.5856 -0.8880 30 1 2.1529 -10.2447 -0.8872 31 1 2.1533 -10.2441 0.8927 32 1 3.7914 -12.4368 1.6468 33 1 4.6400 -10.8908 1.9424 34 1 6.6009 -11.6168 0.8515 35 1 5.9775 -13.2371 1.3092 36 1 6.3694 -12.4676 -1.3383 37 1 5.1148 -13.6477 -0.8456 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733436099.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:23 Heat of formation + Delta-G solvation = -152.658952 kcal Electronic energy + Delta-G solvation = -19385.354626 eV Core-core repulsion = 16059.812690 eV Total energy + Delta-G solvation = -3325.541936 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.55384 -41.27976 -37.92104 -37.47059 -35.37288 -34.61844 -32.24142 -31.05581 -28.44470 -27.74956 -26.88175 -23.22087 -22.68273 -22.44534 -20.40357 -19.88741 -18.73550 -17.94836 -17.81585 -17.39005 -17.05229 -16.89289 -16.48214 -16.01966 -15.75836 -14.89047 -14.76198 -14.61958 -14.42619 -14.29321 -14.14120 -13.50652 -13.35776 -13.31276 -13.19303 -12.87759 -12.69160 -12.58646 -12.35698 -12.18113 -11.84089 -11.81230 -11.64017 -11.57114 -11.15152 -10.87994 -10.40018 -9.78267 -8.75080 -8.37994 -6.18229 0.97961 1.09521 1.39458 1.44590 1.49908 1.54378 1.80297 2.10407 2.23549 2.96886 3.25114 3.42806 3.64787 3.69111 3.78767 3.88402 4.06816 4.12956 4.14971 4.21746 4.26358 4.36567 4.42333 4.50077 4.70945 4.71763 4.85551 4.91799 4.95462 5.11601 5.24515 5.30111 5.40074 5.54711 6.11085 6.17174 6.65605 7.03431 7.10784 8.70990 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.043567 B = 0.002299 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.532694 B =12175.565328 C =12355.407836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 1.000 3.000 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.549 4.549 8 H 0.086 0.914 9 S -0.138 6.138 10 C -0.109 4.109 11 C 0.488 3.512 12 O -0.520 6.520 13 O -0.354 6.354 14 C 0.064 3.936 15 C -0.120 4.120 16 C 0.128 3.872 17 N -0.620 5.620 18 C 0.092 3.908 19 C -0.122 4.122 20 C -0.150 4.150 21 C 0.497 3.503 22 O -0.590 6.590 23 H 0.273 0.727 24 H 0.124 0.876 25 H 0.120 0.880 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.745 -26.139 5.841 30.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.822 3.178 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.697 4.697 8 H 0.104 0.896 9 S 0.089 5.911 10 C -0.257 4.257 11 C 0.331 3.669 12 O -0.408 6.408 13 O -0.271 6.271 14 C -0.011 4.011 15 C -0.159 4.159 16 C 0.006 3.994 17 N -0.353 5.353 18 C -0.029 4.029 19 C -0.159 4.159 20 C -0.190 4.190 21 C 0.287 3.713 22 O -0.471 6.471 23 H 0.082 0.918 24 H 0.142 0.858 25 H 0.138 0.862 26 H 0.082 0.918 27 H 0.103 0.897 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.132 0.868 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.138 0.862 36 H 0.122 0.878 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.883 -26.163 5.285 29.217 hybrid contribution 1.105 1.338 -0.362 1.773 sum 12.988 -24.825 4.922 28.446 Atomic orbital electron populations 1.70161 1.07933 1.28876 1.47619 1.26138 0.96009 1.03324 0.93517 0.84973 0.77787 0.75502 0.79559 1.18740 1.20327 1.18510 1.23160 0.95517 0.91540 1.59460 0.89576 1.85523 1.09293 0.99127 1.97181 1.23094 1.04260 0.90085 1.08289 1.22989 0.84773 0.87450 0.71702 1.90659 1.18283 1.86126 1.45766 1.86467 1.40525 1.16047 1.84052 1.23129 0.96890 0.77790 1.03258 1.21813 0.97491 0.92581 1.04013 1.21206 0.88729 0.85008 1.04468 1.48515 1.37456 1.40855 1.08431 1.22454 0.95002 0.99324 0.86147 1.22655 0.96572 1.03373 0.93305 1.22381 0.97676 0.99444 0.99494 1.21947 0.83515 0.81956 0.83883 1.90714 1.67379 1.65532 1.23496 0.91825 0.85782 0.86232 0.91761 0.89684 0.88861 0.92416 0.91319 0.86828 0.88977 0.88816 0.89525 0.86195 0.87766 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.08 13.22 21.65 0.29 -54.80 16 2 C 0.02 0.86 5.49 84.86 0.47 1.32 16 3 Si 1.00 43.06 29.55 68.60 2.03 45.09 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 7 C -0.55 -30.96 9.50 67.95 0.65 -30.31 16 8 H 0.09 4.50 7.80 -2.91 -0.02 4.47 16 9 S -0.14 -7.55 20.57 -56.49 -1.16 -8.72 16 10 C -0.11 -4.41 6.27 71.24 0.45 -3.97 16 11 C 0.49 18.81 7.98 71.24 0.57 19.38 16 12 O -0.52 -23.29 15.61 21.99 0.34 -22.94 16 13 O -0.35 -11.04 10.22 -51.47 -0.53 -11.57 16 14 C 0.06 1.56 5.47 71.98 0.39 1.95 16 15 C -0.12 -2.25 5.92 30.59 0.18 -2.07 16 16 C 0.13 2.01 5.94 86.38 0.51 2.52 16 17 N -0.62 -8.98 2.94 -817.66 -2.40 -11.38 16 18 C 0.09 0.51 7.34 86.83 0.64 1.15 16 19 C -0.12 -0.38 7.18 31.65 0.23 -0.15 16 20 C -0.15 -1.37 6.86 30.59 0.21 -1.16 16 21 C 0.50 9.79 8.03 87.87 0.71 10.50 16 22 O -0.59 -18.24 17.60 -3.05 -0.05 -18.29 16 23 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 24 H 0.12 4.51 8.14 -2.39 -0.02 4.49 16 25 H 0.12 4.46 8.14 -2.40 -0.02 4.44 16 26 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 27 H 0.08 1.88 8.13 -2.39 -0.02 1.86 16 28 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.35 7.93 -2.39 -0.02 1.33 16 31 H 0.11 1.12 8.14 -2.39 -0.02 1.11 16 32 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 36 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -80.16 336.89 4.56 -75.60 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.06 Total: 7.86 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 4.99 Total: -0.85 kcal Atomic # 7 Polarization: -64.06 SS G_CDS: -2.12 Total: -66.18 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: -0.24 Total: -52.80 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: -7.55 SS G_CDS: -1.16 Total: -8.72 kcal Total: -80.16 4.56 -75.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733436099.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.062 kcal (2) G-P(sol) polarization free energy of solvation -80.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds