Wall clock time and date at job start Wed Apr 15 2020 11:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00409 * 2 1 4 4 H 1.48502 * 109.46912 * 270.00191 * 3 2 1 5 5 H 1.48503 * 109.46784 * 29.99995 * 3 2 1 6 6 H 1.48497 * 109.47627 * 149.99898 * 3 2 1 7 7 C 1.37877 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00555 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99917 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46990 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99790 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00142 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99934 * 179.97438 * 11 10 9 14 14 O 1.45201 * 109.47375 * 179.97438 * 13 11 10 15 15 C 1.34229 * 117.00156 * 179.97438 * 14 13 11 16 16 O 1.20821 * 120.00096 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99799 * 180.02562 * 15 14 13 18 18 C 1.52575 * 109.22620 * 58.76797 * 17 15 14 19 19 C 1.53102 * 109.95374 * 190.99618 * 18 17 15 20 20 S 1.81739 * 108.84117 * 296.97150 * 19 18 17 21 21 C 1.81751 * 102.22279 * 53.26834 * 20 19 18 22 22 C 1.52586 * 109.22520 * 180.02562 * 17 15 14 23 23 H 0.97005 * 119.99919 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47386 * 59.99558 * 9 7 2 25 25 H 1.09002 * 109.47358 * 299.99652 * 9 7 2 26 26 H 0.96998 * 119.99810 * 359.97438 * 10 9 7 27 27 H 1.09001 * 109.47484 * 60.00412 * 13 11 10 28 28 H 1.08998 * 109.47758 * 300.00155 * 13 11 10 29 29 H 1.09004 * 109.18773 * 299.38242 * 17 15 14 30 30 H 1.09000 * 109.39151 * 311.13974 * 18 17 15 31 31 H 1.09004 * 109.39609 * 70.84610 * 18 17 15 32 32 H 1.09003 * 109.57550 * 177.16316 * 19 18 17 33 33 H 1.08997 * 109.57619 * 56.78199 * 19 18 17 34 34 H 1.08999 * 109.57590 * 186.93240 * 21 20 19 35 35 H 1.08992 * 109.57373 * 66.53609 * 21 20 19 36 36 H 1.09003 * 109.38723 * 289.15333 * 22 17 15 37 37 H 1.09001 * 109.38828 * 48.85192 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5612 -5.1050 0.0011 13 6 2.7328 -6.0288 0.0005 14 8 2.0069 -7.2863 0.0018 15 6 2.7379 -8.4121 0.0010 16 8 3.9444 -8.3489 -0.0004 17 6 2.0536 -9.7548 0.0017 18 6 1.1586 -9.8633 -1.2292 19 6 0.2528 -11.0918 -1.1100 20 16 1.2897 -12.5839 -1.0718 21 6 2.4510 -12.2112 0.2758 22 6 3.1092 -10.8566 0.0011 23 1 -0.4850 0.8401 0.0004 24 1 0.6245 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 3.1566 -3.4354 0.0002 27 1 3.3602 -5.9711 0.8900 28 1 3.3589 -5.9713 -0.8899 29 1 1.4419 -9.8447 0.8994 30 1 0.5437 -8.9669 -1.3097 31 1 1.7788 -9.9561 -2.1207 32 1 -0.4184 -11.1353 -1.9677 33 1 -0.3297 -11.0283 -0.1909 34 1 3.2161 -12.9861 0.3233 35 1 1.9113 -12.1694 1.2218 36 1 3.6024 -10.8847 -0.9705 37 1 3.8486 -10.6498 0.7748 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000740961750.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:06 Heat of formation + Delta-G solvation = -140.599792 kcal Electronic energy + Delta-G solvation = -20028.424074 eV Core-core repulsion = 16703.405062 eV Total energy + Delta-G solvation = -3325.019011 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.91032 -38.88755 -37.23341 -36.24460 -34.29931 -32.45473 -31.97044 -29.70505 -28.31628 -26.59499 -23.53467 -23.01254 -22.28918 -20.44529 -19.99389 -17.98938 -17.63806 -17.32714 -16.66595 -16.40458 -15.55271 -15.19385 -15.04687 -14.77933 -14.41973 -14.17996 -13.90173 -13.52330 -13.34449 -13.18472 -12.87004 -12.82495 -12.41793 -12.03547 -11.90510 -11.81450 -11.50879 -11.05010 -10.95588 -10.84602 -10.78352 -10.66789 -10.37823 -10.07379 -9.48004 -9.24017 -8.82080 -8.06443 -8.03977 -6.23092 -4.30694 1.36996 1.96806 2.13600 2.28522 3.11379 3.20706 3.27051 3.29294 3.82839 4.11841 4.22027 4.28635 4.37341 4.48596 4.71205 4.77074 4.93632 4.96133 5.06862 5.12927 5.16466 5.20005 5.27434 5.28548 5.44354 5.50246 5.69511 5.74254 6.23663 7.17694 7.25134 7.41244 7.51424 7.59219 7.88073 8.44742 8.66598 8.91030 9.35858 10.87041 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.048501 B = 0.002538 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.169523 B =11030.880503 C =11463.178828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.499 3.501 12 O -0.534 6.534 13 C 0.048 3.952 14 O -0.327 6.327 15 C 0.467 3.533 16 O -0.507 6.507 17 C -0.085 4.085 18 C -0.119 4.119 19 C -0.077 4.077 20 S -0.271 6.271 21 C -0.079 4.079 22 C -0.109 4.109 23 H 0.267 0.733 24 H 0.030 0.970 25 H 0.030 0.970 26 H 0.393 0.607 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.378 -22.477 -0.160 23.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.356 5.356 11 C 0.282 3.718 12 O -0.412 6.412 13 C -0.030 4.030 14 O -0.241 6.241 15 C 0.309 3.691 16 O -0.395 6.395 17 C -0.104 4.104 18 C -0.158 4.158 19 C -0.225 4.225 20 S -0.045 6.045 21 C -0.227 4.227 22 C -0.148 4.148 23 H 0.077 0.923 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.226 0.774 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.130 0.870 30 H 0.116 0.884 31 H 0.103 0.897 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.129 0.871 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.614 -23.350 -0.795 23.815 hybrid contribution 1.105 2.203 0.808 2.594 sum 5.719 -21.147 0.013 21.906 Atomic orbital electron populations 1.69970 1.06129 1.27451 1.48627 1.24953 0.94940 0.99514 0.94574 0.86386 0.79604 0.82485 0.78279 1.20400 1.20948 1.19714 1.21201 0.93329 0.90287 1.53596 0.91765 1.19184 0.88152 0.81526 0.98038 1.46375 1.11548 1.05356 1.72335 1.19876 0.89104 0.83988 0.78805 1.90709 1.16294 1.84553 1.49629 1.22893 0.94434 0.81015 1.04614 1.86550 1.40415 1.13995 1.83158 1.23563 0.86443 0.86708 0.72369 1.90668 1.15499 1.87921 1.45430 1.21051 0.98200 0.88817 1.02364 1.21760 0.97954 0.99173 0.96902 1.23471 0.99010 0.93299 1.06742 1.86995 1.40126 1.28644 1.48740 1.23460 1.00101 1.00366 0.98819 1.21647 0.96988 0.91069 1.05092 0.92339 0.95245 0.95234 0.77407 0.88505 0.88465 0.87026 0.88414 0.89747 0.86939 0.89196 0.87099 0.89460 0.89543 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.60 13.29 55.43 0.74 -24.87 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.48 29.54 -169.99 -5.02 15.46 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 7 C -0.55 -14.45 9.28 -34.44 -0.32 -14.77 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.47 5.43 -5.19 -0.03 6.44 16 10 N -0.71 -14.28 5.55 -61.47 -0.34 -14.62 16 11 C 0.50 9.72 7.91 -10.99 -0.09 9.63 16 12 O -0.53 -12.69 16.50 -14.11 -0.23 -12.93 16 13 C 0.05 0.70 5.94 36.00 0.21 0.91 16 14 O -0.33 -4.82 9.39 -45.90 -0.43 -5.25 16 15 C 0.47 5.81 7.24 36.01 0.26 6.07 16 16 O -0.51 -7.19 15.51 -18.75 -0.29 -7.48 16 17 C -0.09 -0.76 2.36 -92.20 -0.22 -0.98 16 18 C -0.12 -1.00 5.03 -26.90 -0.14 -1.13 16 19 C -0.08 -0.56 6.45 37.21 0.24 -0.32 16 20 S -0.27 -2.26 22.33 -107.50 -2.40 -4.66 16 21 C -0.08 -0.52 6.45 37.20 0.24 -0.28 16 22 C -0.11 -0.85 4.51 -26.90 -0.12 -0.97 16 23 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 24 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.39 6.66 8.32 -40.82 -0.34 6.32 16 27 H 0.10 1.23 8.13 -51.93 -0.42 0.81 16 28 H 0.10 1.24 8.13 -51.93 -0.42 0.81 16 29 H 0.11 0.86 8.08 -51.93 -0.42 0.44 16 30 H 0.10 0.92 7.78 -51.93 -0.40 0.52 16 31 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 32 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.74 8.06 -51.93 -0.42 0.32 16 37 H 0.09 0.71 7.69 -51.93 -0.40 0.31 16 LS Contribution 328.50 15.07 4.95 4.95 Total: -1.00 -32.67 328.50 -8.40 -41.07 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.31 Total: 2.07 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -0.05 Total: 6.26 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.40 Total: -39.48 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.95 Total: -25.66 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: -2.26 SS G_CDS: -2.40 Total: -4.66 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.67 -8.40 -41.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740961750.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.533 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds