Wall clock time and date at job start Wed Apr 15 2020 11:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00409 * 2 1 4 4 H 1.48502 * 109.46912 * 270.00191 * 3 2 1 5 5 H 1.48503 * 109.46784 * 29.99995 * 3 2 1 6 6 H 1.48497 * 109.47627 * 149.99898 * 3 2 1 7 7 C 1.37877 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00555 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99917 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46990 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99790 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00142 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99934 * 179.97438 * 11 10 9 14 14 O 1.45201 * 109.47375 * 179.97438 * 13 11 10 15 15 C 1.34229 * 117.00156 * 179.97438 * 14 13 11 16 16 O 1.20821 * 120.00096 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99799 * 180.02562 * 15 14 13 18 18 C 1.52575 * 109.22620 * 58.76797 * 17 15 14 19 19 C 1.53102 * 109.95374 * 190.99618 * 18 17 15 20 20 S 1.81739 * 108.84117 * 296.97150 * 19 18 17 21 21 C 1.81751 * 102.22279 * 53.26834 * 20 19 18 22 22 C 1.52586 * 109.22520 * 180.02562 * 17 15 14 23 23 H 0.97005 * 119.99919 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47386 * 59.99558 * 9 7 2 25 25 H 1.09002 * 109.47358 * 299.99652 * 9 7 2 26 26 H 0.96998 * 119.99810 * 359.97438 * 10 9 7 27 27 H 1.09001 * 109.47484 * 60.00412 * 13 11 10 28 28 H 1.08998 * 109.47758 * 300.00155 * 13 11 10 29 29 H 1.09004 * 109.18773 * 299.38242 * 17 15 14 30 30 H 1.09000 * 109.39151 * 311.13974 * 18 17 15 31 31 H 1.09004 * 109.39609 * 70.84610 * 18 17 15 32 32 H 1.09003 * 109.57550 * 177.16316 * 19 18 17 33 33 H 1.08997 * 109.57619 * 56.78199 * 19 18 17 34 34 H 1.08999 * 109.57590 * 186.93240 * 21 20 19 35 35 H 1.08992 * 109.57373 * 66.53609 * 21 20 19 36 36 H 1.09003 * 109.38723 * 289.15333 * 22 17 15 37 37 H 1.09001 * 109.38828 * 48.85192 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5612 -5.1050 0.0011 13 6 2.7328 -6.0288 0.0005 14 8 2.0069 -7.2863 0.0018 15 6 2.7379 -8.4121 0.0010 16 8 3.9444 -8.3489 -0.0004 17 6 2.0536 -9.7548 0.0017 18 6 1.1586 -9.8633 -1.2292 19 6 0.2528 -11.0918 -1.1100 20 16 1.2897 -12.5839 -1.0718 21 6 2.4510 -12.2112 0.2758 22 6 3.1092 -10.8566 0.0011 23 1 -0.4850 0.8401 0.0004 24 1 0.6245 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 3.1566 -3.4354 0.0002 27 1 3.3602 -5.9711 0.8900 28 1 3.3589 -5.9713 -0.8899 29 1 1.4419 -9.8447 0.8994 30 1 0.5437 -8.9669 -1.3097 31 1 1.7788 -9.9561 -2.1207 32 1 -0.4184 -11.1353 -1.9677 33 1 -0.3297 -11.0283 -0.1909 34 1 3.2161 -12.9861 0.3233 35 1 1.9113 -12.1694 1.2218 36 1 3.6024 -10.8847 -0.9705 37 1 3.8486 -10.6498 0.7748 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740961750.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:05 Heat of formation + Delta-G solvation = -161.294081 kcal Electronic energy + Delta-G solvation = -20029.321445 eV Core-core repulsion = 16703.405062 eV Total energy + Delta-G solvation = -3325.916383 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.96119 -40.47214 -38.16636 -37.22558 -36.19621 -34.42927 -32.57470 -31.03936 -29.43447 -28.18533 -24.76769 -24.10273 -23.42061 -21.66809 -21.28469 -19.29545 -18.89400 -18.15505 -17.97770 -17.59509 -17.16005 -16.92212 -16.23413 -16.02092 -15.60148 -14.98453 -14.85873 -14.65068 -14.41081 -14.14745 -14.00683 -13.92223 -13.73470 -13.57916 -13.38320 -12.94797 -12.72747 -12.49172 -12.24096 -12.19475 -11.93754 -11.65878 -11.50856 -11.47675 -10.93145 -10.82791 -10.67855 -9.94494 -8.70417 -8.30699 -6.47226 0.78704 0.99381 1.20546 1.44217 1.45556 1.53601 1.56366 1.57047 2.32245 2.53243 3.04740 3.35653 3.50631 3.60343 3.69381 3.88636 3.95351 4.03059 4.08712 4.19995 4.29485 4.41287 4.55962 4.74837 4.83572 4.87157 5.01829 5.05932 5.10649 5.20795 5.23153 5.40561 5.61584 5.81119 6.50662 6.61885 6.76682 7.19283 7.34215 8.81405 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.048501 B = 0.002538 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.169523 B =11030.880503 C =11463.178828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.256 1.256 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.699 5.699 11 C 0.499 3.501 12 O -0.583 6.583 13 C 0.059 3.941 14 O -0.345 6.345 15 C 0.469 3.531 16 O -0.524 6.524 17 C -0.081 4.081 18 C -0.115 4.115 19 C -0.068 4.068 20 S -0.306 6.306 21 C -0.068 4.068 22 C -0.103 4.103 23 H 0.269 0.731 24 H -0.007 1.007 25 H -0.007 1.007 26 H 0.412 0.588 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.124 0.876 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.405 -22.980 0.234 24.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.807 3.193 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.595 4.595 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.350 5.350 11 C 0.285 3.715 12 O -0.463 6.463 13 C -0.017 4.017 14 O -0.260 6.260 15 C 0.313 3.687 16 O -0.412 6.412 17 C -0.100 4.100 18 C -0.154 4.154 19 C -0.216 4.216 20 S -0.080 6.080 21 C -0.216 4.216 22 C -0.142 4.142 23 H 0.078 0.922 24 H 0.011 0.989 25 H 0.011 0.989 26 H 0.249 0.751 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.146 0.854 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.137 0.863 33 H 0.118 0.882 34 H 0.142 0.858 35 H 0.120 0.880 36 H 0.096 0.904 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.695 -23.887 -0.402 24.811 hybrid contribution 0.452 2.282 0.682 2.424 sum 7.147 -21.605 0.279 22.758 Atomic orbital electron populations 1.70127 1.08232 1.28637 1.49845 1.26042 0.95770 1.03854 0.93846 0.85161 0.78497 0.77015 0.78582 1.19645 1.21022 1.17930 1.21607 0.94413 0.90411 1.53035 0.89624 1.18629 0.88563 0.83782 0.94614 1.46053 1.11723 1.04774 1.72498 1.20686 0.89311 0.84694 0.76794 1.90686 1.18855 1.85295 1.51464 1.22740 0.92595 0.79340 1.07060 1.86557 1.41368 1.14511 1.83597 1.24186 0.86320 0.86830 0.71354 1.90659 1.16231 1.88036 1.46312 1.21194 0.98580 0.87004 1.03239 1.21705 0.97845 0.99245 0.96584 1.23448 0.98603 0.91929 1.07634 1.87149 1.41171 1.29558 1.50098 1.23482 0.99876 0.99813 0.98388 1.21598 0.96618 0.91245 1.04704 0.92188 0.98948 0.98917 0.75139 0.85858 0.85945 0.85408 0.89567 0.90092 0.86296 0.88187 0.85768 0.88041 0.90406 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.09 13.29 21.45 0.28 -54.80 16 2 C 0.00 0.26 5.46 84.66 0.46 0.72 16 3 Si 0.98 41.45 29.54 68.60 2.03 43.48 16 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.56 -29.44 9.28 25.60 0.24 -29.20 16 8 H 0.09 4.06 7.60 -2.91 -0.02 4.04 16 9 C 0.27 14.18 5.43 85.63 0.46 14.65 16 10 N -0.70 -28.22 5.55 -466.77 -2.59 -30.81 16 11 C 0.50 19.42 7.91 87.66 0.69 20.11 16 12 O -0.58 -28.49 16.50 15.76 0.26 -28.23 16 13 C 0.06 1.63 5.94 71.23 0.42 2.06 16 14 O -0.34 -9.78 9.39 -45.05 -0.42 -10.21 16 15 C 0.47 10.92 7.24 71.24 0.52 11.44 16 16 O -0.52 -13.81 15.51 21.98 0.34 -13.47 16 17 C -0.08 -1.31 2.36 -11.82 -0.03 -1.34 16 18 C -0.11 -1.81 5.03 30.49 0.15 -1.65 16 19 C -0.07 -0.90 6.45 72.02 0.46 -0.43 16 20 S -0.31 -4.65 22.33 -56.49 -1.26 -5.91 16 21 C -0.07 -0.73 6.45 72.01 0.46 -0.27 16 22 C -0.10 -1.40 4.51 30.49 0.14 -1.26 16 23 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 24 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 25 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 26 H 0.41 13.35 8.32 -92.71 -0.77 12.57 16 27 H 0.12 2.79 8.13 -2.39 -0.02 2.77 16 28 H 0.12 2.80 8.13 -2.39 -0.02 2.78 16 29 H 0.13 1.69 8.08 -2.38 -0.02 1.67 16 30 H 0.09 1.59 7.78 -2.39 -0.02 1.57 16 31 H 0.08 1.32 8.06 -2.39 -0.02 1.30 16 32 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 1.21 8.06 -2.39 -0.02 1.19 16 37 H 0.09 1.25 7.69 -2.39 -0.02 1.23 16 Total: -1.00 -72.25 328.50 2.93 -69.32 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.31 Total: 15.82 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 3.99 Total: 14.82 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -2.30 Total: -85.61 kcal Atomic # 8 Polarization: -52.08 SS G_CDS: 0.18 Total: -51.91 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 16 Polarization: -4.65 SS G_CDS: -1.26 Total: -5.91 kcal Total: -72.25 2.93 -69.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740961750.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.977 kcal (2) G-P(sol) polarization free energy of solvation -72.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds