Wall clock time and date at job start Wed Apr 15 2020 11:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86806 * 119.99972 * 2 1 4 4 H 1.48495 * 109.47314 * 240.00488 * 3 2 1 5 5 H 1.48502 * 109.46734 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46908 * 120.00516 * 3 2 1 7 7 C 1.38952 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99717 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99979 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00238 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99815 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00298 * 180.02562 * 10 9 7 13 13 O 1.45206 * 109.47254 * 179.97438 * 12 10 9 14 14 C 1.34224 * 117.00127 * 179.97438 * 13 12 10 15 15 O 1.20827 * 119.99978 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00030 * 180.02562 * 14 13 12 17 17 C 1.53004 * 109.46846 * 180.02562 * 16 14 13 18 18 C 1.52575 * 109.22695 * 63.76511 * 17 16 14 19 19 C 1.53102 * 109.95374 * 190.99545 * 18 17 16 20 20 S 1.81739 * 108.84117 * 296.97150 * 19 18 17 21 21 C 1.81751 * 102.22279 * 53.26834 * 20 19 18 22 22 C 1.52586 * 109.22423 * 184.99890 * 17 16 14 23 23 H 0.97003 * 119.99874 * 359.97438 * 1 2 3 24 24 H 0.97009 * 120.00053 * 0.02562 * 9 7 2 25 25 H 1.09007 * 109.47106 * 60.00023 * 12 10 9 26 26 H 1.09003 * 109.47211 * 300.00400 * 12 10 9 27 27 H 1.08996 * 109.46932 * 60.00362 * 16 14 13 28 28 H 1.09000 * 109.47188 * 299.99578 * 16 14 13 29 29 H 1.09004 * 109.18795 * 304.37898 * 17 16 14 30 30 H 1.09000 * 109.39151 * 311.13902 * 18 17 16 31 31 H 1.09004 * 109.39609 * 70.84538 * 18 17 16 32 32 H 1.09003 * 109.57550 * 177.16316 * 19 18 17 33 33 H 1.08997 * 109.57619 * 56.78199 * 19 18 17 34 34 H 1.08999 * 109.57590 * 186.93240 * 21 20 19 35 35 H 1.08992 * 109.57373 * 66.53609 * 21 20 19 36 36 H 1.09003 * 109.38723 * 289.15302 * 22 17 16 37 37 H 1.09001 * 109.38828 * 48.85162 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6966 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1020 1.6964 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 8 2.1874 -5.9666 -0.0016 14 6 1.6745 -7.2069 -0.0016 15 8 0.4766 -7.3652 -0.0017 16 6 2.5925 -8.4020 -0.0016 17 6 1.7591 -9.6852 -0.0022 18 6 0.9519 -9.7594 -1.2948 19 6 -0.0852 -10.8815 -1.1995 20 16 0.7819 -12.4686 -1.0208 21 6 1.8724 -12.1536 0.3987 22 6 2.6892 -10.8883 0.1234 23 1 -0.4850 0.8401 0.0004 24 1 0.3534 -2.3906 -0.0005 25 1 0.6175 -4.9205 -0.8914 26 1 0.6168 -4.9208 0.8886 27 1 3.2211 -8.3771 0.8885 28 1 3.2213 -8.3772 -0.8915 29 1 1.0761 -9.6692 0.8471 30 1 0.4432 -8.8094 -1.4588 31 1 1.6236 -9.9574 -2.1302 32 1 -0.6915 -10.8965 -2.1053 33 1 -0.7247 -10.7151 -0.3326 34 1 2.5454 -12.9998 0.5371 35 1 1.2711 -12.0120 1.2967 36 1 3.2474 -11.0126 -0.8046 37 1 3.3869 -10.7222 0.9442 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762012639.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:07 Heat of formation + Delta-G solvation = -160.700946 kcal Electronic energy + Delta-G solvation = -20130.566395 eV Core-core repulsion = 16804.675733 eV Total energy + Delta-G solvation = -3325.890663 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.77601 -40.13619 -38.61873 -37.18056 -36.04283 -33.43592 -32.44231 -32.04008 -29.95044 -26.90045 -25.91285 -24.07053 -22.30393 -21.43489 -21.07100 -20.08525 -18.81470 -17.94984 -17.86682 -17.75981 -17.12204 -16.41155 -16.01819 -15.82131 -15.48307 -15.39410 -15.05029 -14.64049 -14.59883 -13.99590 -13.84413 -13.59674 -13.56475 -13.24128 -12.96703 -12.88644 -12.50304 -12.42886 -12.27673 -12.13627 -11.90899 -11.75160 -11.67002 -11.57955 -11.11607 -10.59736 -10.51299 -10.13498 -8.68701 -8.53614 -6.04496 0.85193 1.14216 1.36951 1.38325 1.46435 1.56686 1.61271 1.86044 2.29270 3.04379 3.11970 3.48181 3.60387 3.70310 3.92571 4.04471 4.09653 4.14593 4.20969 4.24148 4.31746 4.38766 4.54259 4.61972 4.75912 4.80492 4.81761 4.98449 5.04844 5.18182 5.34411 5.35270 5.46553 5.87694 6.44660 6.68214 7.01462 7.38440 7.91885 8.63174 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.055413 B = 0.002553 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.171750 B =10964.734056 C =11302.474313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.339 4.339 8 H 0.085 0.915 9 N -0.558 5.558 10 C 0.435 3.565 11 O -0.618 6.618 12 C 0.072 3.928 13 O -0.347 6.347 14 C 0.455 3.545 15 O -0.528 6.528 16 C -0.102 4.102 17 C -0.079 4.079 18 C -0.124 4.124 19 C -0.066 4.066 20 S -0.315 6.315 21 C -0.070 4.070 22 C -0.111 4.111 23 H 0.281 0.719 24 H 0.400 0.600 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.131 0.869 28 H 0.125 0.875 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.121 0.879 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.191 -21.655 0.320 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.103 0.897 9 N -0.196 5.196 10 C 0.222 3.778 11 O -0.505 6.505 12 C -0.005 4.005 13 O -0.263 6.263 14 C 0.300 3.700 15 O -0.418 6.418 16 C -0.139 4.139 17 C -0.098 4.098 18 C -0.163 4.163 19 C -0.214 4.214 20 S -0.089 6.089 21 C -0.218 4.218 22 C -0.150 4.150 23 H 0.091 0.909 24 H 0.234 0.766 25 H 0.122 0.878 26 H 0.122 0.878 27 H 0.149 0.851 28 H 0.143 0.857 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.123 0.877 33 H 0.099 0.901 34 H 0.139 0.861 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.352 -22.458 -0.284 22.500 hybrid contribution -0.577 2.091 0.637 2.261 sum 0.775 -20.367 0.354 20.384 Atomic orbital electron populations 1.69666 1.06982 1.29825 1.49111 1.26139 0.96584 1.02631 0.95610 0.84914 0.77751 0.76069 0.79183 1.19441 1.19400 1.19433 1.19690 0.92958 0.83404 1.50776 0.89737 1.41754 1.09551 1.04250 1.64015 1.20159 0.88104 0.85456 0.84082 1.90524 1.15468 1.87733 1.56802 1.22460 0.90206 0.82715 1.05114 1.86571 1.40841 1.15333 1.83524 1.24657 0.89383 0.84611 0.71368 1.90619 1.17986 1.86611 1.46606 1.21616 0.97309 0.86772 1.08198 1.20972 0.96956 0.93024 0.98805 1.21896 0.97651 0.98550 0.98176 1.23349 0.99487 0.92749 1.05845 1.86999 1.52808 1.23468 1.45631 1.23497 0.99450 1.02282 0.96558 1.21740 0.97427 0.91122 1.04696 0.90938 0.76596 0.87799 0.87782 0.85066 0.85666 0.90918 0.90964 0.90328 0.87691 0.90131 0.86084 0.89413 0.89752 0.88033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.47 13.05 21.66 0.28 -48.19 16 2 C -0.01 -0.46 5.50 84.93 0.47 0.00 16 3 Si 1.00 41.72 29.55 68.60 2.03 43.74 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 6 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.34 -18.95 9.68 84.04 0.81 -18.14 16 8 H 0.08 4.99 7.16 -2.91 -0.02 4.97 16 9 N -0.56 -28.50 5.29 -306.98 -1.62 -30.12 16 10 C 0.44 21.07 7.86 87.66 0.69 21.76 16 11 O -0.62 -34.88 16.08 15.71 0.25 -34.63 16 12 C 0.07 2.66 5.94 71.24 0.42 3.08 16 13 O -0.35 -12.14 9.75 -45.00 -0.44 -12.58 16 14 C 0.45 12.41 7.56 71.24 0.54 12.95 16 15 O -0.53 -16.07 13.69 21.96 0.30 -15.77 16 16 C -0.10 -1.73 5.26 29.85 0.16 -1.57 16 17 C -0.08 -1.21 1.60 -11.07 -0.02 -1.23 16 18 C -0.12 -2.21 4.83 30.49 0.15 -2.07 16 19 C -0.07 -1.16 6.45 72.02 0.46 -0.69 16 20 S -0.31 -5.53 22.33 -56.49 -1.26 -6.79 16 21 C -0.07 -0.82 6.46 72.01 0.46 -0.36 16 22 C -0.11 -1.16 5.05 30.49 0.15 -1.01 16 23 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 24 H 0.40 19.22 7.90 -92.70 -0.73 18.49 16 25 H 0.10 3.44 8.13 -2.38 -0.02 3.42 16 26 H 0.10 3.44 8.13 -2.39 -0.02 3.42 16 27 H 0.13 1.71 8.09 -2.39 -0.02 1.69 16 28 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 1.28 7.90 -2.38 -0.02 1.26 16 30 H 0.07 1.63 5.68 -2.39 -0.01 1.62 16 31 H 0.08 1.31 8.06 -2.39 -0.02 1.29 16 32 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 0.87 8.06 -2.39 -0.02 0.86 16 37 H 0.10 0.68 8.05 -2.39 -0.02 0.67 16 Total: -1.00 -68.72 323.44 4.19 -64.53 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.35 Total: 27.07 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 4.30 Total: 12.73 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -1.34 Total: -78.31 kcal Atomic # 8 Polarization: -63.08 SS G_CDS: 0.11 Total: -62.97 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Atomic # 16 Polarization: -5.53 SS G_CDS: -1.26 Total: -6.79 kcal Total: -68.72 4.19 -64.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762012639.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.175 kcal (2) G-P(sol) polarization free energy of solvation -68.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds