Wall clock time and date at job start Wed Apr 15 2020 11:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99656 * 2 1 4 4 H 1.48504 * 109.47270 * 269.99969 * 3 2 1 5 5 H 1.48501 * 109.47243 * 29.99908 * 3 2 1 6 6 H 1.48507 * 109.47270 * 150.00208 * 3 2 1 7 7 C 1.38799 * 120.00625 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99095 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00327 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99927 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46995 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46847 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.47035 * 179.97438 * 12 11 10 14 14 C 1.34229 * 117.00140 * 179.97438 * 13 12 11 15 15 O 1.20824 * 120.00058 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99987 * 180.02562 * 14 13 12 17 17 H 1.09005 * 109.59973 * 300.32086 * 16 14 13 18 18 C 1.53353 * 109.60070 * 180.02562 * 16 14 13 19 19 C 1.53076 * 108.42235 * 172.71268 * 18 16 14 20 20 C 1.50170 * 109.89247 * 48.89556 * 19 18 16 21 21 O 1.21285 * 118.24622 * 162.39900 * 20 19 18 22 22 N 1.33354 * 123.51042 * 342.41495 * 20 19 18 23 23 C 1.45759 * 124.10773 * 2.22735 * 22 20 19 24 24 H 0.97000 * 120.00252 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47379 * 59.99908 * 10 9 7 26 26 H 1.08997 * 109.46868 * 299.99507 * 10 9 7 27 27 H 1.08998 * 109.47433 * 60.00031 * 11 10 9 28 28 H 1.08997 * 109.46989 * 299.99529 * 11 10 9 29 29 H 1.09003 * 109.47408 * 60.00077 * 12 11 10 30 30 H 1.08996 * 109.47500 * 299.99608 * 12 11 10 31 31 H 1.08997 * 109.67462 * 52.97813 * 18 16 14 32 32 H 1.09003 * 109.67226 * 292.43827 * 18 16 14 33 33 H 1.08996 * 109.39452 * 288.76879 * 19 18 16 34 34 H 1.08992 * 109.32968 * 168.98130 * 19 18 16 35 35 H 0.97004 * 117.94628 * 181.93894 * 22 20 19 36 36 H 1.08999 * 109.30102 * 101.23219 * 23 22 20 37 37 H 1.08996 * 109.29931 * 220.61002 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4404 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1372 -0.0005 9 16 3.7724 -1.2019 0.0001 10 6 4.0867 -2.9844 -0.0001 11 6 5.5959 -3.2360 -0.0002 12 6 5.8616 -4.7428 0.0002 13 8 7.2938 -4.9817 -0.0006 14 6 7.6982 -6.2616 0.0002 15 8 6.8824 -7.1529 0.0010 16 6 9.1696 -6.5870 0.0001 17 1 9.6384 -6.1603 -0.8867 18 6 9.3600 -8.1086 0.0005 19 6 10.8495 -8.4098 -0.1838 20 6 11.6601 -7.5832 0.7726 21 8 12.8046 -7.9185 0.9936 22 7 11.1889 -6.5005 1.3922 23 6 9.8224 -6.0114 1.2575 24 1 -0.4850 0.8400 0.0004 25 1 3.6441 -3.4313 -0.8904 26 1 3.6435 -3.4315 0.8896 27 1 6.0389 -2.7891 0.8897 28 1 6.0387 -2.7889 -0.8902 29 1 5.4185 -5.1901 -0.8896 30 1 5.4189 -5.1896 0.8903 31 1 8.7923 -8.5497 -0.8188 32 1 9.0170 -8.5212 0.9493 33 1 11.1430 -8.1723 -1.2063 34 1 11.0302 -9.4673 0.0084 35 1 11.7922 -6.0099 1.9722 36 1 9.2449 -6.3102 2.1322 37 1 9.8340 -4.9235 1.1916 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805407397.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:11 Heat of formation + Delta-G solvation = -147.325021 kcal Electronic energy + Delta-G solvation = -19593.343017 eV Core-core repulsion = 16268.032378 eV Total energy + Delta-G solvation = -3325.310639 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.28478 -40.20699 -37.37522 -36.53898 -33.74556 -33.55115 -32.50370 -30.78183 -26.87294 -25.69933 -25.28900 -23.96571 -21.65735 -21.41563 -19.66463 -18.32013 -17.68886 -17.42599 -16.93131 -16.56371 -16.33948 -15.70595 -15.11499 -15.05476 -14.69524 -14.48784 -14.32480 -13.88936 -13.43266 -12.94203 -12.90142 -12.63087 -12.43855 -12.31762 -11.84431 -11.64244 -11.60089 -11.32594 -11.16773 -11.04952 -10.86090 -10.48796 -10.32085 -10.22339 -9.87567 -9.61793 -9.07229 -8.67533 -7.03982 -6.34489 -4.08452 1.80768 2.16226 2.24270 2.77725 2.95072 3.25118 3.39459 3.49314 3.88976 4.01357 4.05885 4.17930 4.25317 4.60516 4.61839 4.73268 4.78680 4.92310 4.95463 5.02358 5.04346 5.08009 5.24482 5.27755 5.37886 5.55028 5.58248 5.64212 5.94347 6.21941 6.24193 6.25820 6.46982 6.79377 7.42156 7.72619 7.88980 8.38212 9.10701 10.74841 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.045475 B = 0.002400 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.568833 B =11663.700272 C =12139.119525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.092 3.908 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.237 1.237 7 C -0.505 4.505 8 H 0.089 0.911 9 S -0.206 6.206 10 C -0.085 4.085 11 C -0.101 4.101 12 C 0.072 3.928 13 O -0.353 6.353 14 C 0.469 3.531 15 O -0.499 6.499 16 C -0.098 4.098 17 H 0.121 0.879 18 C -0.110 4.110 19 C -0.134 4.134 20 C 0.518 3.482 21 O -0.556 6.556 22 N -0.718 5.718 23 C 0.119 3.881 24 H 0.271 0.729 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.405 0.595 36 H 0.075 0.925 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.464 -13.393 0.461 24.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.161 1.161 7 C -0.653 4.653 8 H 0.107 0.893 9 S 0.022 5.978 10 C -0.233 4.233 11 C -0.140 4.140 12 C -0.003 4.003 13 O -0.270 6.270 14 C 0.310 3.690 15 O -0.386 6.386 16 C -0.117 4.117 17 H 0.139 0.861 18 C -0.148 4.148 19 C -0.174 4.174 20 C 0.305 3.695 21 O -0.434 6.434 22 N -0.370 5.370 23 C -0.005 4.005 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.241 0.759 36 H 0.093 0.907 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 21.145 -12.950 0.430 24.800 hybrid contribution -0.925 0.038 0.150 0.938 sum 20.220 -12.912 0.580 23.999 Atomic orbital electron populations 1.69931 1.05922 1.27809 1.47946 1.24798 0.94528 0.99049 0.93282 0.86673 0.81719 0.83203 0.79752 1.19316 1.20022 1.16150 1.22110 0.86908 0.97514 1.58767 0.89288 1.84169 1.11896 1.04173 1.97562 1.22948 0.95922 1.00210 1.04259 1.21335 0.96018 0.92155 1.04449 1.23289 0.75869 0.98147 1.02989 1.86466 1.29113 1.28136 1.83252 1.23137 0.91591 0.81294 0.72959 1.90706 1.55294 1.47981 1.44593 1.21347 0.89794 0.98879 1.01728 0.86144 1.21626 0.95550 0.92336 1.05294 1.21682 0.94051 1.01575 1.00092 1.20250 0.87617 0.80538 0.81075 1.90786 1.19307 1.69312 1.64027 1.45419 1.13448 1.28996 1.49177 1.21278 0.82380 1.00329 0.96539 0.91881 0.91000 0.90951 0.90207 0.90213 0.90840 0.90816 0.88947 0.89947 0.87667 0.87272 0.75900 0.90690 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.19 13.97 55.49 0.78 -25.41 16 2 C 0.09 2.63 5.50 -17.43 -0.10 2.53 16 3 Si 0.86 20.94 27.74 -169.99 -4.71 16.22 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.24 -5.61 6.74 56.52 0.38 -5.23 16 7 C -0.51 -14.25 10.04 30.94 0.31 -13.94 16 8 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 9 S -0.21 -4.78 19.41 -107.50 -2.09 -6.87 16 10 C -0.09 -1.52 5.67 37.16 0.21 -1.31 16 11 C -0.10 -1.39 5.60 -26.73 -0.15 -1.54 16 12 C 0.07 0.86 5.47 37.16 0.20 1.06 16 13 O -0.35 -3.72 10.16 -39.26 -0.40 -4.12 16 14 C 0.47 4.48 7.23 36.01 0.26 4.74 16 15 O -0.50 -6.23 15.65 -18.75 -0.29 -6.52 16 16 C -0.10 -0.59 2.70 -91.63 -0.25 -0.84 16 17 H 0.12 0.56 8.12 -51.93 -0.42 0.13 16 18 C -0.11 -0.63 4.71 -26.51 -0.12 -0.75 16 19 C -0.13 -0.74 6.03 -28.10 -0.17 -0.91 16 20 C 0.52 4.29 7.71 -11.87 -0.09 4.19 16 21 O -0.56 -7.00 17.78 5.55 0.10 -6.90 16 22 N -0.72 -4.39 5.45 -61.39 -0.33 -4.73 16 23 C 0.12 0.61 6.42 -4.49 -0.03 0.58 16 24 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.07 1.28 8.14 -51.91 -0.42 0.86 16 26 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.07 0.88 8.13 -51.93 -0.42 0.45 16 30 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 31 H 0.09 0.54 7.90 -51.93 -0.41 0.13 16 32 H 0.08 0.51 8.13 -51.93 -0.42 0.09 16 33 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.40 2.16 8.80 -40.82 -0.36 1.80 16 36 H 0.07 0.38 8.11 -51.93 -0.42 -0.04 16 37 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 328.87 15.07 4.96 4.96 Total: -1.00 -34.01 328.87 -7.34 -41.35 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -5.42 Total: -1.80 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 0.08 Total: -6.17 kcal Atomic # 7 Polarization: -30.58 SS G_CDS: 0.44 Total: -30.14 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.59 Total: -17.55 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.71 Total: 16.22 kcal Atomic # 16 Polarization: -4.78 SS G_CDS: -2.09 Total: -6.87 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.01 -7.34 -41.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805407397.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.976 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds