Wall clock time and date at job start Wed Apr 15 2020 11:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99656 * 2 1 4 4 H 1.48504 * 109.47270 * 269.99969 * 3 2 1 5 5 H 1.48501 * 109.47243 * 29.99908 * 3 2 1 6 6 H 1.48507 * 109.47270 * 150.00208 * 3 2 1 7 7 C 1.38799 * 120.00625 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99095 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00327 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99927 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46995 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46847 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.47035 * 179.97438 * 12 11 10 14 14 C 1.34229 * 117.00140 * 179.97438 * 13 12 11 15 15 O 1.20824 * 120.00058 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99987 * 180.02562 * 14 13 12 17 17 H 1.09005 * 109.59973 * 300.32086 * 16 14 13 18 18 C 1.53353 * 109.60070 * 180.02562 * 16 14 13 19 19 C 1.53076 * 108.42235 * 172.71268 * 18 16 14 20 20 C 1.50170 * 109.89247 * 48.89556 * 19 18 16 21 21 O 1.21285 * 118.24622 * 162.39900 * 20 19 18 22 22 N 1.33354 * 123.51042 * 342.41495 * 20 19 18 23 23 C 1.45759 * 124.10773 * 2.22735 * 22 20 19 24 24 H 0.97000 * 120.00252 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47379 * 59.99908 * 10 9 7 26 26 H 1.08997 * 109.46868 * 299.99507 * 10 9 7 27 27 H 1.08998 * 109.47433 * 60.00031 * 11 10 9 28 28 H 1.08997 * 109.46989 * 299.99529 * 11 10 9 29 29 H 1.09003 * 109.47408 * 60.00077 * 12 11 10 30 30 H 1.08996 * 109.47500 * 299.99608 * 12 11 10 31 31 H 1.08997 * 109.67462 * 52.97813 * 18 16 14 32 32 H 1.09003 * 109.67226 * 292.43827 * 18 16 14 33 33 H 1.08996 * 109.39452 * 288.76879 * 19 18 16 34 34 H 1.08992 * 109.32968 * 168.98130 * 19 18 16 35 35 H 0.97004 * 117.94628 * 181.93894 * 22 20 19 36 36 H 1.08999 * 109.30102 * 101.23219 * 23 22 20 37 37 H 1.08996 * 109.29931 * 220.61002 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4404 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1372 -0.0005 9 16 3.7724 -1.2019 0.0001 10 6 4.0867 -2.9844 -0.0001 11 6 5.5959 -3.2360 -0.0002 12 6 5.8616 -4.7428 0.0002 13 8 7.2938 -4.9817 -0.0006 14 6 7.6982 -6.2616 0.0002 15 8 6.8824 -7.1529 0.0010 16 6 9.1696 -6.5870 0.0001 17 1 9.6384 -6.1603 -0.8867 18 6 9.3600 -8.1086 0.0005 19 6 10.8495 -8.4098 -0.1838 20 6 11.6601 -7.5832 0.7726 21 8 12.8046 -7.9185 0.9936 22 7 11.1889 -6.5005 1.3922 23 6 9.8224 -6.0114 1.2575 24 1 -0.4850 0.8400 0.0004 25 1 3.6441 -3.4313 -0.8904 26 1 3.6435 -3.4315 0.8896 27 1 6.0389 -2.7891 0.8897 28 1 6.0387 -2.7889 -0.8902 29 1 5.4185 -5.1901 -0.8896 30 1 5.4189 -5.1896 0.8903 31 1 8.7923 -8.5497 -0.8188 32 1 9.0170 -8.5212 0.9493 33 1 11.1430 -8.1723 -1.2063 34 1 11.0302 -9.4673 0.0084 35 1 11.7922 -6.0099 1.9722 36 1 9.2449 -6.3102 2.1322 37 1 9.8340 -4.9235 1.1916 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805407397.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:11 Heat of formation + Delta-G solvation = -170.482133 kcal Electronic energy + Delta-G solvation = -19594.347185 eV Core-core repulsion = 16268.032378 eV Total energy + Delta-G solvation = -3326.314807 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.98837 -40.91970 -38.17071 -37.28194 -34.91505 -34.67754 -34.06400 -31.37275 -28.21855 -27.63806 -25.80202 -24.64002 -22.78391 -22.16106 -20.21960 -19.63113 -18.93518 -18.36709 -17.74542 -17.33173 -17.09682 -16.98725 -16.42092 -16.05562 -15.93349 -15.17334 -15.05437 -14.94314 -14.53314 -14.42306 -14.00113 -13.94428 -13.38071 -13.04832 -13.03888 -12.89951 -12.58226 -12.40156 -12.36438 -12.21769 -12.05009 -11.80340 -11.50402 -11.48621 -11.16130 -10.87648 -10.59182 -10.17408 -8.99598 -8.51600 -6.23518 1.05827 1.07337 1.33640 1.41999 1.50371 1.57796 1.82893 2.25022 2.27269 2.66792 2.86554 3.35392 3.46468 3.56039 3.67038 3.86812 3.98035 4.03994 4.14527 4.17345 4.31603 4.37121 4.53151 4.59000 4.67230 4.68176 4.84492 4.94915 5.02402 5.09993 5.13638 5.43522 5.69696 5.76352 6.10917 6.24654 6.63152 6.92092 7.14622 8.61341 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.045475 B = 0.002400 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.568833 B =11663.700272 C =12139.119525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.036 3.964 3 Si 0.926 3.074 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.225 1.225 7 C -0.525 4.525 8 H 0.051 0.949 9 S -0.207 6.207 10 C -0.075 4.075 11 C -0.088 4.088 12 C 0.078 3.922 13 O -0.350 6.350 14 C 0.473 3.527 15 O -0.529 6.529 16 C -0.091 4.091 17 H 0.143 0.857 18 C -0.105 4.105 19 C -0.126 4.126 20 C 0.514 3.486 21 O -0.606 6.606 22 N -0.708 5.708 23 C 0.121 3.879 24 H 0.277 0.723 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.114 0.886 35 H 0.409 0.591 36 H 0.078 0.922 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.456 -12.885 0.251 25.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.169 4.169 3 Si 0.747 3.253 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.148 1.148 7 C -0.673 4.673 8 H 0.069 0.931 9 S 0.021 5.979 10 C -0.224 4.224 11 C -0.126 4.126 12 C 0.003 3.997 13 O -0.266 6.266 14 C 0.316 3.684 15 O -0.418 6.418 16 C -0.111 4.111 17 H 0.160 0.840 18 C -0.143 4.143 19 C -0.165 4.165 20 C 0.303 3.697 21 O -0.488 6.488 22 N -0.359 5.359 23 C -0.003 4.003 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.141 0.859 34 H 0.132 0.868 35 H 0.246 0.754 36 H 0.096 0.904 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 23.125 -12.430 0.228 26.255 hybrid contribution -1.574 -0.251 0.221 1.610 sum 21.550 -12.682 0.448 25.009 Atomic orbital electron populations 1.70040 1.07742 1.29146 1.49130 1.25815 0.95436 1.02913 0.92744 0.85702 0.80847 0.78472 0.80248 1.18593 1.18971 1.14823 1.22359 0.90215 0.96270 1.58418 0.93079 1.83798 1.07332 1.09152 1.97587 1.22989 0.99214 0.95972 1.04185 1.21151 0.92590 0.93711 1.05196 1.23023 0.77000 0.96588 1.03120 1.86458 1.27909 1.28915 1.83350 1.23749 0.92660 0.80380 0.71595 1.90707 1.56412 1.48620 1.46067 1.21423 0.87317 0.99214 1.03114 0.83980 1.21582 0.95552 0.92106 1.05062 1.21664 0.93217 1.01395 1.00269 1.20719 0.87146 0.80773 0.81111 1.90768 1.21479 1.70708 1.65894 1.45398 1.13873 1.28282 1.48383 1.21367 0.81550 1.01223 0.96205 0.91411 0.91178 0.91061 0.89375 0.89545 0.90894 0.90720 0.88788 0.90622 0.85876 0.86777 0.75436 0.90380 0.86769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.98 13.97 21.65 0.30 -55.68 16 2 C 0.04 2.05 5.50 84.86 0.47 2.52 16 3 Si 0.93 42.75 27.74 68.60 1.90 44.65 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 6 H -0.23 -9.84 6.74 99.48 0.67 -9.17 16 7 C -0.53 -30.09 10.04 67.95 0.68 -29.41 16 8 H 0.05 3.20 8.03 -2.91 -0.02 3.17 16 9 S -0.21 -9.37 19.41 -56.49 -1.10 -10.47 16 10 C -0.08 -2.60 5.67 71.98 0.41 -2.19 16 11 C -0.09 -2.20 5.60 30.59 0.17 -2.03 16 12 C 0.08 1.68 5.47 71.98 0.39 2.08 16 13 O -0.35 -6.38 10.16 -51.41 -0.52 -6.91 16 14 C 0.47 7.90 7.23 71.24 0.52 8.42 16 15 O -0.53 -12.34 15.65 21.97 0.34 -12.00 16 16 C -0.09 -0.84 2.70 -11.45 -0.03 -0.88 16 17 H 0.14 0.78 8.12 -2.38 -0.02 0.76 16 18 C -0.11 -0.97 4.71 30.74 0.14 -0.83 16 19 C -0.13 -1.13 6.03 29.71 0.18 -0.95 16 20 C 0.51 7.77 7.71 87.71 0.68 8.44 16 21 O -0.61 -15.02 17.78 -3.04 -0.05 -15.07 16 22 N -0.71 -7.26 5.45 -467.32 -2.55 -9.80 16 23 C 0.12 0.90 6.42 86.49 0.56 1.46 16 24 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 25 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.07 2.49 8.14 -2.40 -0.02 2.47 16 27 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.07 1.60 8.13 -2.39 -0.02 1.58 16 30 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 31 H 0.09 0.89 7.90 -2.39 -0.02 0.87 16 32 H 0.08 0.82 8.13 -2.39 -0.02 0.80 16 33 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.41 3.68 8.80 -92.71 -0.82 2.86 16 36 H 0.08 0.59 8.11 -2.39 -0.02 0.57 16 37 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -74.39 328.87 2.71 -71.68 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 0.22 Total: 6.97 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 4.16 Total: -13.37 kcal Atomic # 7 Polarization: -63.24 SS G_CDS: -2.24 Total: -65.49 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -0.23 Total: -33.97 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.90 Total: 44.65 kcal Atomic # 16 Polarization: -9.37 SS G_CDS: -1.10 Total: -10.47 kcal Total: -74.39 2.71 -71.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805407397.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.806 kcal (2) G-P(sol) polarization free energy of solvation -74.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds