Wall clock time and date at job start Wed Apr 15 2020 11:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00262 * 2 1 4 4 H 1.48498 * 109.47122 * 270.00592 * 3 2 1 5 5 H 1.48496 * 109.46561 * 30.00193 * 3 2 1 6 6 H 1.48492 * 109.47407 * 150.00232 * 3 2 1 7 7 C 1.38802 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00052 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99829 * 359.97438 * 7 2 1 10 10 C 1.80997 * 99.99958 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47391 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47589 * 179.97438 * 11 10 9 13 13 O 1.45193 * 109.47350 * 180.02562 * 12 11 10 14 14 C 1.34230 * 117.00353 * 180.02562 * 13 12 11 15 15 O 1.20826 * 119.99531 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00474 * 180.02562 * 14 13 12 17 17 H 1.09000 * 109.73511 * 59.58964 * 16 14 13 18 18 C 1.53342 * 109.60483 * 179.97438 * 16 14 13 19 19 C 1.53069 * 108.42527 * 187.28771 * 18 16 14 20 20 C 1.50178 * 109.82098 * 311.14114 * 19 18 16 21 21 O 1.21283 * 118.24507 * 197.54064 * 20 19 18 22 22 N 1.33182 * 123.63409 * 17.53268 * 20 19 18 23 23 C 1.45752 * 124.06115 * 357.82730 * 22 20 19 24 24 H 0.96998 * 120.00300 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47048 * 60.00365 * 10 9 7 26 26 H 1.09000 * 109.47220 * 300.00324 * 10 9 7 27 27 H 1.09004 * 109.46988 * 60.00012 * 11 10 9 28 28 H 1.09000 * 109.47390 * 300.00449 * 11 10 9 29 29 H 1.09002 * 109.46885 * 60.00571 * 12 11 10 30 30 H 1.09000 * 109.47185 * 300.00653 * 12 11 10 31 31 H 1.08999 * 109.67677 * 67.55349 * 18 16 14 32 32 H 1.08998 * 109.70056 * 307.03488 * 18 16 14 33 33 H 1.09002 * 109.40300 * 71.22794 * 19 18 16 34 34 H 1.09003 * 109.40410 * 191.05547 * 19 18 16 35 35 H 0.96998 * 117.99235 * 177.80255 * 22 20 19 36 36 H 1.09000 * 109.30135 * 258.74096 * 23 22 20 37 37 H 1.08995 * 109.13794 * 139.25044 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6525 0.7001 6 1 3.5478 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9792 -5.3243 0.0001 12 6 3.1512 -6.3078 -0.0005 13 8 2.6421 -7.6675 -0.0005 14 6 3.5483 -8.6577 -0.0005 15 8 4.7281 -8.3967 -0.0010 16 6 3.0945 -10.0947 -0.0011 17 1 2.4887 -10.2890 -0.8862 18 6 4.3170 -11.0204 -0.0016 19 6 3.8331 -12.4608 -0.1864 20 6 2.7118 -12.7480 0.7704 21 8 2.4282 -13.9063 0.9912 22 7 2.0106 -11.8008 1.3908 23 6 2.2702 -10.3729 1.2565 24 1 -0.4850 0.8400 0.0004 25 1 3.1243 -3.7314 0.8895 26 1 3.1244 -3.7314 -0.8905 27 1 1.3704 -5.4847 -0.8897 28 1 1.3708 -5.4841 0.8903 29 1 3.7604 -6.1476 0.8891 30 1 3.7593 -6.1478 -0.8909 31 1 4.8462 -10.9299 0.9469 32 1 4.9829 -10.7491 -0.8208 33 1 3.4802 -12.5958 -1.2089 34 1 4.6577 -13.1473 0.0056 35 1 1.2818 -12.0780 1.9677 36 1 2.8182 -10.0225 2.1312 37 1 1.3207 -9.8418 1.1897 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805407398.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:13 Heat of formation + Delta-G solvation = -147.820232 kcal Electronic energy + Delta-G solvation = -19554.068383 eV Core-core repulsion = 16228.736270 eV Total energy + Delta-G solvation = -3325.332113 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.25223 -40.17814 -37.32643 -36.49807 -33.63185 -33.52187 -32.48909 -30.74113 -26.79502 -25.56864 -25.24199 -23.90962 -21.55609 -21.35423 -19.63162 -18.27654 -17.64295 -17.43052 -16.88114 -16.51914 -16.29984 -15.66639 -15.04610 -14.85985 -14.66534 -14.43825 -14.26513 -13.85402 -13.54042 -12.92150 -12.84216 -12.42332 -12.30138 -12.17998 -11.80645 -11.60049 -11.42109 -11.22609 -11.06366 -10.98231 -10.77749 -10.65111 -10.40124 -10.19448 -9.68858 -9.58932 -9.11983 -8.41493 -6.61833 -6.29190 -4.00685 1.84896 2.20260 2.30397 2.82094 3.17786 3.18591 3.25670 3.47306 3.92571 4.04524 4.09349 4.15692 4.21936 4.63843 4.68647 4.81389 4.98468 5.00981 5.07372 5.07564 5.11115 5.26115 5.32665 5.39129 5.40653 5.57776 5.68759 5.80373 6.06359 6.28018 6.29881 6.36662 6.58639 6.82936 7.46937 7.54760 7.75741 8.30370 9.17317 10.78943 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.052327 B = 0.002284 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.966988 B =12256.926558 C =12647.148274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.074 0.926 9 S -0.124 6.124 10 C -0.115 4.115 11 C -0.098 4.098 12 C 0.072 3.928 13 O -0.353 6.353 14 C 0.469 3.531 15 O -0.500 6.500 16 C -0.098 4.098 17 H 0.121 0.879 18 C -0.110 4.110 19 C -0.134 4.134 20 C 0.518 3.482 21 O -0.557 6.557 22 N -0.717 5.717 23 C 0.119 3.881 24 H 0.268 0.732 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.405 0.595 36 H 0.075 0.925 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.809 -21.267 0.373 22.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.667 4.667 8 H 0.092 0.908 9 S 0.104 5.896 10 C -0.264 4.264 11 C -0.136 4.136 12 C -0.003 4.003 13 O -0.269 6.269 14 C 0.310 3.690 15 O -0.388 6.388 16 C -0.118 4.118 17 H 0.139 0.861 18 C -0.148 4.148 19 C -0.174 4.174 20 C 0.305 3.695 21 O -0.436 6.436 22 N -0.369 5.369 23 C -0.006 4.006 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.241 0.759 36 H 0.093 0.907 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.916 -21.733 0.345 22.284 hybrid contribution 1.689 1.521 0.172 2.279 sum 6.605 -20.212 0.517 21.270 Atomic orbital electron populations 1.70009 1.05934 1.27466 1.47039 1.25023 0.95107 0.99157 0.94489 0.86141 0.79432 0.81406 0.78412 1.20225 1.20718 1.19657 1.22689 0.94575 0.90633 1.58798 0.90828 1.84657 1.08722 0.99283 1.96893 1.23181 1.03499 0.96322 1.03360 1.21292 0.96393 0.91584 1.04364 1.23332 0.97877 0.76303 1.02756 1.86474 1.40182 1.17086 1.83154 1.23128 0.84762 0.88147 0.72931 1.90699 1.18504 1.84834 1.44714 1.21344 0.99722 0.88968 1.01741 0.86140 1.21618 0.95976 0.91941 1.05264 1.21682 0.97612 0.97991 1.00079 1.20214 0.83310 0.84915 0.81094 1.90784 1.68719 1.19990 1.64075 1.45388 1.36122 1.06206 1.49217 1.21300 1.01305 0.81440 0.96549 0.92211 0.91722 0.91722 0.90304 0.90293 0.90987 0.91004 0.89973 0.88975 0.87673 0.87290 0.75867 0.90659 0.88441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.41 13.22 55.49 0.73 -24.68 16 2 C 0.07 1.99 5.49 -17.43 -0.10 1.89 16 3 Si 0.92 21.10 29.55 -169.99 -5.02 16.07 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.52 -14.48 9.50 30.94 0.29 -14.19 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.12 -3.11 21.44 -107.50 -2.30 -5.41 16 10 C -0.12 -2.17 5.67 37.16 0.21 -1.96 16 11 C -0.10 -1.45 5.60 -26.73 -0.15 -1.60 16 12 C 0.07 0.91 5.47 37.16 0.20 1.11 16 13 O -0.35 -3.94 10.16 -39.26 -0.40 -4.34 16 14 C 0.47 4.70 7.23 36.01 0.26 4.96 16 15 O -0.50 -6.44 15.65 -18.75 -0.29 -6.73 16 16 C -0.10 -0.63 2.70 -91.63 -0.25 -0.88 16 17 H 0.12 0.60 8.12 -51.93 -0.42 0.18 16 18 C -0.11 -0.66 4.71 -26.52 -0.12 -0.79 16 19 C -0.13 -0.77 6.04 -28.10 -0.17 -0.94 16 20 C 0.52 4.42 7.70 -11.95 -0.09 4.33 16 21 O -0.56 -7.16 17.78 5.55 0.10 -7.06 16 22 N -0.72 -4.62 5.44 -61.43 -0.33 -4.95 16 23 C 0.12 0.66 6.42 -4.49 -0.03 0.63 16 24 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.06 1.20 8.14 -51.91 -0.42 0.78 16 26 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 30 H 0.07 0.91 8.13 -51.93 -0.42 0.48 16 31 H 0.08 0.53 8.13 -51.93 -0.42 0.11 16 32 H 0.09 0.56 7.90 -51.93 -0.41 0.15 16 33 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.41 2.29 8.80 -40.82 -0.36 1.93 16 36 H 0.08 0.41 8.11 -51.93 -0.42 -0.01 16 37 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 331.53 15.07 5.00 5.00 Total: -1.00 -34.03 331.53 -7.85 -41.88 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -5.38 Total: -2.35 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 0.06 Total: -7.42 kcal Atomic # 7 Polarization: -30.03 SS G_CDS: 0.40 Total: -29.63 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.59 Total: -18.13 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -2.30 Total: -5.41 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.03 -7.85 -41.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805407398.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.940 kcal (2) G-P(sol) polarization free energy of solvation -34.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds