Wall clock time and date at job start Wed Apr 15 2020 11:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00262 * 2 1 4 4 H 1.48498 * 109.47122 * 270.00592 * 3 2 1 5 5 H 1.48496 * 109.46561 * 30.00193 * 3 2 1 6 6 H 1.48492 * 109.47407 * 150.00232 * 3 2 1 7 7 C 1.38802 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00052 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99829 * 359.97438 * 7 2 1 10 10 C 1.80997 * 99.99958 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47391 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47589 * 179.97438 * 11 10 9 13 13 O 1.45193 * 109.47350 * 180.02562 * 12 11 10 14 14 C 1.34230 * 117.00353 * 180.02562 * 13 12 11 15 15 O 1.20826 * 119.99531 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00474 * 180.02562 * 14 13 12 17 17 H 1.09000 * 109.73511 * 59.58964 * 16 14 13 18 18 C 1.53342 * 109.60483 * 179.97438 * 16 14 13 19 19 C 1.53069 * 108.42527 * 187.28771 * 18 16 14 20 20 C 1.50178 * 109.82098 * 311.14114 * 19 18 16 21 21 O 1.21283 * 118.24507 * 197.54064 * 20 19 18 22 22 N 1.33182 * 123.63409 * 17.53268 * 20 19 18 23 23 C 1.45752 * 124.06115 * 357.82730 * 22 20 19 24 24 H 0.96998 * 120.00300 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47048 * 60.00365 * 10 9 7 26 26 H 1.09000 * 109.47220 * 300.00324 * 10 9 7 27 27 H 1.09004 * 109.46988 * 60.00012 * 11 10 9 28 28 H 1.09000 * 109.47390 * 300.00449 * 11 10 9 29 29 H 1.09002 * 109.46885 * 60.00571 * 12 11 10 30 30 H 1.09000 * 109.47185 * 300.00653 * 12 11 10 31 31 H 1.08999 * 109.67677 * 67.55349 * 18 16 14 32 32 H 1.08998 * 109.70056 * 307.03488 * 18 16 14 33 33 H 1.09002 * 109.40300 * 71.22794 * 19 18 16 34 34 H 1.09003 * 109.40410 * 191.05547 * 19 18 16 35 35 H 0.96998 * 117.99235 * 177.80255 * 22 20 19 36 36 H 1.09000 * 109.30135 * 258.74096 * 23 22 20 37 37 H 1.08995 * 109.13794 * 139.25044 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6525 0.7001 6 1 3.5478 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9792 -5.3243 0.0001 12 6 3.1512 -6.3078 -0.0005 13 8 2.6421 -7.6675 -0.0005 14 6 3.5483 -8.6577 -0.0005 15 8 4.7281 -8.3967 -0.0010 16 6 3.0945 -10.0947 -0.0011 17 1 2.4887 -10.2890 -0.8862 18 6 4.3170 -11.0204 -0.0016 19 6 3.8331 -12.4608 -0.1864 20 6 2.7118 -12.7480 0.7704 21 8 2.4282 -13.9063 0.9912 22 7 2.0106 -11.8008 1.3908 23 6 2.2702 -10.3729 1.2565 24 1 -0.4850 0.8400 0.0004 25 1 3.1243 -3.7314 0.8895 26 1 3.1244 -3.7314 -0.8905 27 1 1.3704 -5.4847 -0.8897 28 1 1.3708 -5.4841 0.8903 29 1 3.7604 -6.1476 0.8891 30 1 3.7593 -6.1478 -0.8909 31 1 4.8462 -10.9299 0.9469 32 1 4.9829 -10.7491 -0.8208 33 1 3.4802 -12.5958 -1.2089 34 1 4.6577 -13.1473 0.0056 35 1 1.2818 -12.0780 1.9677 36 1 2.8182 -10.0225 2.1312 37 1 1.3207 -9.8418 1.1897 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805407398.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:13 Heat of formation + Delta-G solvation = -170.387738 kcal Electronic energy + Delta-G solvation = -19555.046983 eV Core-core repulsion = 16228.736270 eV Total energy + Delta-G solvation = -3326.310714 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.99163 -40.93002 -38.16538 -37.27870 -34.88842 -34.57647 -34.07205 -31.36561 -28.18709 -27.43929 -25.80280 -24.62308 -22.74776 -22.15889 -20.21855 -19.57782 -18.93298 -18.36662 -17.73791 -17.32189 -16.98700 -16.89432 -16.41774 -16.03339 -15.98188 -15.17482 -15.05392 -14.95475 -14.45178 -14.23487 -13.92344 -13.81523 -13.17516 -13.02056 -12.95400 -12.88439 -12.61004 -12.42318 -12.36284 -12.30524 -12.05666 -11.70917 -11.48552 -11.39214 -11.14609 -10.87441 -10.34866 -10.18010 -8.67149 -8.37942 -6.13984 1.05981 1.27046 1.39899 1.41411 1.51296 1.58218 1.82821 2.26257 2.28727 2.96796 3.27210 3.37808 3.47435 3.55920 3.67546 3.88348 4.00400 4.05818 4.15651 4.19444 4.35402 4.37408 4.54221 4.59861 4.67555 4.70862 4.84498 4.94978 5.04937 5.10537 5.15933 5.40347 5.44559 5.75715 6.18008 6.25189 6.63294 7.04918 7.14762 8.71235 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.052327 B = 0.002284 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.966988 B =12256.926558 C =12647.148274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.016 3.984 3 Si 0.993 3.007 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.540 4.540 8 H 0.074 0.926 9 S -0.186 6.186 10 C -0.092 4.092 11 C -0.087 4.087 12 C 0.080 3.920 13 O -0.352 6.352 14 C 0.473 3.527 15 O -0.529 6.529 16 C -0.092 4.092 17 H 0.142 0.858 18 C -0.105 4.105 19 C -0.126 4.126 20 C 0.513 3.487 21 O -0.607 6.607 22 N -0.708 5.708 23 C 0.120 3.880 24 H 0.272 0.728 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.409 0.591 36 H 0.079 0.921 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.768 -21.473 0.122 22.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.815 3.185 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.687 4.687 8 H 0.092 0.908 9 S 0.043 5.957 10 C -0.241 4.241 11 C -0.125 4.125 12 C 0.005 3.995 13 O -0.268 6.268 14 C 0.316 3.684 15 O -0.417 6.417 16 C -0.111 4.111 17 H 0.159 0.841 18 C -0.142 4.142 19 C -0.165 4.165 20 C 0.302 3.698 21 O -0.489 6.489 22 N -0.359 5.359 23 C -0.004 4.004 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.141 0.859 34 H 0.133 0.867 35 H 0.246 0.754 36 H 0.097 0.903 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.865 -21.925 0.100 22.696 hybrid contribution 1.400 1.509 0.261 2.075 sum 7.265 -20.416 0.361 21.673 Atomic orbital electron populations 1.70136 1.07620 1.28590 1.47916 1.26047 0.96034 1.03078 0.93793 0.85027 0.78190 0.76478 0.78801 1.19340 1.20003 1.18754 1.23054 0.94828 0.91980 1.58883 0.90783 1.84621 1.13206 1.00843 1.97057 1.23079 1.00710 0.96722 1.03627 1.21108 0.97141 0.89671 1.04576 1.23031 0.96487 0.76891 1.03083 1.86467 1.40447 1.16579 1.83314 1.23740 0.84179 0.88846 0.71601 1.90698 1.19704 1.85255 1.46093 1.21423 1.00288 0.86345 1.03062 0.84055 1.21575 0.95744 0.91816 1.05107 1.21667 0.96815 0.97784 1.00226 1.20698 0.83623 0.84361 0.81126 1.90766 1.70294 1.21953 1.65924 1.45369 1.35642 1.06398 1.48445 1.21379 1.02021 0.80747 0.96267 0.91931 0.91364 0.91409 0.90227 0.90034 0.90653 0.90811 0.90570 0.88729 0.85887 0.86687 0.75428 0.90305 0.86933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.51 13.22 21.65 0.29 -53.22 16 2 C 0.02 0.87 5.49 84.86 0.47 1.33 16 3 Si 0.99 42.95 29.55 68.60 2.03 44.98 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 6 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.54 -30.26 9.50 67.95 0.65 -29.61 16 8 H 0.07 3.99 7.80 -2.91 -0.02 3.97 16 9 S -0.19 -9.44 21.44 -56.49 -1.21 -10.65 16 10 C -0.09 -3.41 5.67 71.98 0.41 -3.00 16 11 C -0.09 -2.44 5.60 30.59 0.17 -2.27 16 12 C 0.08 1.87 5.47 71.98 0.39 2.27 16 13 O -0.35 -7.04 10.16 -51.42 -0.52 -7.56 16 14 C 0.47 8.42 7.23 71.24 0.52 8.93 16 15 O -0.53 -12.66 15.65 21.96 0.34 -12.32 16 16 C -0.09 -0.94 2.70 -11.45 -0.03 -0.97 16 17 H 0.14 0.94 8.12 -2.39 -0.02 0.92 16 18 C -0.10 -1.03 4.71 30.73 0.14 -0.88 16 19 C -0.13 -1.20 6.04 29.71 0.18 -1.02 16 20 C 0.51 8.12 7.70 87.74 0.68 8.79 16 21 O -0.61 -15.41 17.78 -3.04 -0.05 -15.47 16 22 N -0.71 -7.91 5.44 -467.55 -2.54 -10.45 16 23 C 0.12 1.04 6.42 86.49 0.56 1.59 16 24 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 25 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.07 2.46 8.14 -2.40 -0.02 2.44 16 27 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 28 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.08 1.73 8.13 -2.39 -0.02 1.71 16 30 H 0.07 1.71 8.13 -2.39 -0.02 1.70 16 31 H 0.08 0.86 8.13 -2.39 -0.02 0.84 16 32 H 0.09 0.94 7.90 -2.39 -0.02 0.92 16 33 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.41 4.08 8.80 -92.71 -0.82 3.26 16 36 H 0.08 0.68 8.11 -2.39 -0.02 0.66 16 37 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -73.81 331.53 2.71 -71.10 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 0.26 Total: 8.42 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 4.12 Total: -14.83 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: -2.26 Total: -63.67 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -0.23 Total: -35.35 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: -9.44 SS G_CDS: -1.21 Total: -10.65 kcal Total: -73.81 2.71 -71.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805407398.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.283 kcal (2) G-P(sol) polarization free energy of solvation -73.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds