Wall clock time and date at job start Wed Apr 15 2020 11:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86793 * 119.99755 * 2 1 4 4 H 1.48508 * 109.47165 * 240.00230 * 3 2 1 5 5 H 1.48499 * 109.47637 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47330 * 120.00375 * 3 2 1 7 7 C 1.38799 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00099 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99728 * 359.97438 * 7 2 1 10 10 C 1.80996 * 100.00004 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47603 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47446 * 180.02562 * 11 10 9 13 13 O 1.45203 * 109.47109 * 180.02562 * 12 11 10 14 14 C 1.34233 * 117.00078 * 179.97438 * 13 12 11 15 15 O 1.20828 * 119.99564 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00164 * 180.02562 * 14 13 12 17 17 H 1.09007 * 109.69913 * 300.51872 * 16 14 13 18 18 C 1.53347 * 109.67699 * 180.02562 * 16 14 13 19 19 C 1.52919 * 108.67472 * 172.73190 * 18 16 14 20 20 N 1.45749 * 110.48645 * 50.75748 * 19 18 16 21 21 C 1.33355 * 124.10803 * 340.89395 * 20 19 18 22 22 O 1.21281 * 118.24800 * 182.22736 * 21 20 19 23 23 C 1.50183 * 123.50397 * 2.27573 * 21 20 19 24 24 H 0.97005 * 120.00268 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47277 * 59.99723 * 10 9 7 26 26 H 1.09005 * 109.47241 * 299.99975 * 10 9 7 27 27 H 1.09006 * 109.46982 * 59.99602 * 11 10 9 28 28 H 1.09005 * 109.46850 * 300.00274 * 11 10 9 29 29 H 1.08997 * 109.47627 * 59.99774 * 12 11 10 30 30 H 1.09005 * 109.47241 * 299.99938 * 12 11 10 31 31 H 1.08997 * 109.59875 * 292.49079 * 18 16 14 32 32 H 1.09001 * 109.60055 * 52.81212 * 18 16 14 33 33 H 1.09005 * 109.29743 * 171.06272 * 19 18 16 34 34 H 1.08991 * 109.30584 * 290.43807 * 19 18 16 35 35 H 0.97002 * 117.95133 * 160.92315 * 20 19 18 36 36 H 1.09002 * 109.38684 * 222.25705 * 23 21 20 37 37 H 1.09001 * 109.41595 * 102.51726 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9793 -5.3243 0.0001 12 6 3.1513 -6.3077 0.0008 13 8 2.6421 -7.6675 0.0008 14 6 3.5485 -8.6577 0.0008 15 8 4.7282 -8.3966 0.0012 16 6 3.0946 -10.0946 0.0002 17 1 2.4867 -10.2883 0.8840 18 6 4.3160 -11.0218 0.0009 19 6 3.8369 -12.4625 0.1836 20 7 2.7794 -12.7732 -0.7700 21 6 2.0553 -11.8539 -1.4094 22 8 1.1729 -12.2318 -2.1507 23 6 2.2747 -10.3756 -1.2614 24 1 -0.4851 0.8401 0.0004 25 1 3.1244 -3.7313 0.8895 26 1 3.1244 -3.7314 -0.8906 27 1 1.3704 -5.4846 -0.8897 28 1 1.3709 -5.4840 0.8904 29 1 3.7599 -6.1472 0.8907 30 1 3.7601 -6.1481 -0.8893 31 1 4.8454 -10.9299 -0.9474 32 1 4.9819 -10.7487 0.8195 33 1 4.6740 -13.1430 0.0276 34 1 3.4570 -12.5901 1.1972 35 1 2.5901 -13.7073 -0.9507 36 1 1.3107 -9.8724 -1.1863 37 1 2.8108 -9.9998 -2.1329 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805492641.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:15 Heat of formation + Delta-G solvation = -147.758386 kcal Electronic energy + Delta-G solvation = -19601.900982 eV Core-core repulsion = 16276.571551 eV Total energy + Delta-G solvation = -3325.329431 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.21684 -40.11399 -37.29950 -36.45422 -33.92982 -33.34722 -32.45954 -30.17965 -27.15427 -25.80183 -25.29581 -23.75302 -21.41181 -21.01107 -19.72863 -18.05854 -17.76501 -17.40185 -17.00748 -16.55280 -16.23980 -15.65029 -14.95101 -14.83689 -14.79615 -14.39992 -14.11445 -13.86771 -13.49727 -12.83980 -12.78958 -12.39130 -12.28626 -12.12981 -11.67024 -11.63414 -11.36656 -11.18036 -11.01778 -10.99832 -10.84677 -10.68683 -10.35214 -10.15725 -9.65894 -9.57718 -9.08579 -8.38329 -6.58617 -6.26195 -3.97667 1.92610 2.22498 2.37718 2.79552 3.19817 3.21708 3.26402 3.49958 3.92601 4.07433 4.17613 4.18218 4.19881 4.64077 4.66121 4.76959 5.00972 5.05210 5.10323 5.11885 5.13550 5.28707 5.35410 5.38838 5.43390 5.55624 5.72882 5.84793 6.11259 6.28621 6.35318 6.40919 6.62916 6.83159 7.53169 7.57090 7.76388 8.32887 9.19955 10.81874 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.042116 B = 0.002384 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.668147 B =11743.171297 C =12228.258526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.073 0.927 9 S -0.123 6.123 10 C -0.115 4.115 11 C -0.098 4.098 12 C 0.072 3.928 13 O -0.352 6.352 14 C 0.466 3.534 15 O -0.505 6.505 16 C -0.084 4.084 17 H 0.119 0.881 18 C -0.124 4.124 19 C 0.111 3.889 20 N -0.723 5.723 21 C 0.525 3.475 22 O -0.550 6.550 23 C -0.127 4.127 24 H 0.269 0.731 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.401 0.599 36 H 0.119 0.881 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.391 -24.689 1.693 26.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.668 4.668 8 H 0.091 0.909 9 S 0.105 5.895 10 C -0.263 4.263 11 C -0.137 4.137 12 C -0.003 4.003 13 O -0.268 6.268 14 C 0.308 3.692 15 O -0.393 6.393 16 C -0.104 4.104 17 H 0.136 0.864 18 C -0.161 4.161 19 C -0.013 4.013 20 N -0.376 5.376 21 C 0.312 3.688 22 O -0.428 6.428 23 C -0.167 4.167 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.237 0.763 36 H 0.138 0.862 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.036 -24.569 1.354 25.592 hybrid contribution 2.072 1.107 0.059 2.350 sum 9.108 -23.461 1.413 25.207 Atomic orbital electron populations 1.70006 1.05929 1.27556 1.46968 1.25019 0.95103 0.99133 0.94503 0.86202 0.79222 0.81098 0.78878 1.19898 1.20787 1.19911 1.22648 0.94543 0.90681 1.58883 0.90894 1.84669 1.08711 0.99215 1.96889 1.23181 1.03480 0.96349 1.03320 1.21295 0.96420 0.91564 1.04410 1.23318 0.97850 0.76425 1.02665 1.86486 1.40173 1.17033 1.83090 1.23333 0.84719 0.88445 0.72692 1.90685 1.18535 1.84970 1.45096 1.21166 0.99101 0.88608 1.01500 0.86355 1.21837 0.96438 0.92263 1.05599 1.21415 0.90409 0.96653 0.92829 1.45513 1.37129 1.10152 1.44776 1.19962 0.80762 0.88736 0.79347 1.90803 1.32291 1.81344 1.38344 1.21670 1.03766 0.93058 0.98233 0.92165 0.91754 0.91734 0.90255 0.90303 0.91052 0.91057 0.89802 0.88285 0.89677 0.91015 0.76295 0.86235 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.75 13.22 55.49 0.73 -25.01 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.52 -14.71 9.50 30.94 0.29 -14.42 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.12 -3.16 21.44 -107.50 -2.30 -5.46 16 10 C -0.11 -2.23 5.67 37.16 0.21 -2.02 16 11 C -0.10 -1.54 5.60 -26.73 -0.15 -1.69 16 12 C 0.07 0.97 5.47 37.15 0.20 1.18 16 13 O -0.35 -4.32 10.17 -39.27 -0.40 -4.72 16 14 C 0.47 5.03 7.23 36.00 0.26 5.29 16 15 O -0.51 -6.71 15.65 -18.75 -0.29 -7.00 16 16 C -0.08 -0.59 2.71 -91.56 -0.25 -0.84 16 17 H 0.12 0.64 8.13 -51.93 -0.42 0.22 16 18 C -0.12 -0.65 4.71 -26.59 -0.13 -0.77 16 19 C 0.11 0.37 7.17 -4.49 -0.03 0.33 16 20 N -0.72 -4.16 5.45 -61.39 -0.33 -4.49 16 21 C 0.53 4.75 7.71 -11.87 -0.09 4.65 16 22 O -0.55 -7.43 17.78 5.56 0.10 -7.33 16 23 C -0.13 -0.99 5.30 -28.10 -0.15 -1.14 16 24 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.06 1.23 8.14 -51.91 -0.42 0.81 16 26 H 0.06 1.24 8.14 -51.91 -0.42 0.81 16 27 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 30 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 31 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 32 H 0.10 0.50 7.90 -51.93 -0.41 0.09 16 33 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 34 H 0.07 0.16 8.14 -51.93 -0.42 -0.27 16 35 H 0.40 1.92 8.80 -40.82 -0.36 1.56 16 36 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.11 0.82 8.09 -51.93 -0.42 0.40 16 LS Contribution 331.56 15.07 5.00 5.00 Total: -1.00 -34.74 331.56 -7.83 -42.57 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -5.38 Total: -2.36 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 0.08 Total: -7.50 kcal Atomic # 7 Polarization: -29.91 SS G_CDS: 0.40 Total: -29.51 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.59 Total: -19.06 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.30 Total: -5.46 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.74 -7.83 -42.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805492641.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.192 kcal (2) G-P(sol) polarization free energy of solvation -34.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds