Wall clock time and date at job start Wed Apr 15 2020 11:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86793 * 119.99755 * 2 1 4 4 H 1.48508 * 109.47165 * 240.00230 * 3 2 1 5 5 H 1.48499 * 109.47637 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47330 * 120.00375 * 3 2 1 7 7 C 1.38799 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00099 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99728 * 359.97438 * 7 2 1 10 10 C 1.80996 * 100.00004 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47603 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47446 * 180.02562 * 11 10 9 13 13 O 1.45203 * 109.47109 * 180.02562 * 12 11 10 14 14 C 1.34233 * 117.00078 * 179.97438 * 13 12 11 15 15 O 1.20828 * 119.99564 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00164 * 180.02562 * 14 13 12 17 17 H 1.09007 * 109.69913 * 300.51872 * 16 14 13 18 18 C 1.53347 * 109.67699 * 180.02562 * 16 14 13 19 19 C 1.52919 * 108.67472 * 172.73190 * 18 16 14 20 20 N 1.45749 * 110.48645 * 50.75748 * 19 18 16 21 21 C 1.33355 * 124.10803 * 340.89395 * 20 19 18 22 22 O 1.21281 * 118.24800 * 182.22736 * 21 20 19 23 23 C 1.50183 * 123.50397 * 2.27573 * 21 20 19 24 24 H 0.97005 * 120.00268 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47277 * 59.99723 * 10 9 7 26 26 H 1.09005 * 109.47241 * 299.99975 * 10 9 7 27 27 H 1.09006 * 109.46982 * 59.99602 * 11 10 9 28 28 H 1.09005 * 109.46850 * 300.00274 * 11 10 9 29 29 H 1.08997 * 109.47627 * 59.99774 * 12 11 10 30 30 H 1.09005 * 109.47241 * 299.99938 * 12 11 10 31 31 H 1.08997 * 109.59875 * 292.49079 * 18 16 14 32 32 H 1.09001 * 109.60055 * 52.81212 * 18 16 14 33 33 H 1.09005 * 109.29743 * 171.06272 * 19 18 16 34 34 H 1.08991 * 109.30584 * 290.43807 * 19 18 16 35 35 H 0.97002 * 117.95133 * 160.92315 * 20 19 18 36 36 H 1.09002 * 109.38684 * 222.25705 * 23 21 20 37 37 H 1.09001 * 109.41595 * 102.51726 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9793 -5.3243 0.0001 12 6 3.1513 -6.3077 0.0008 13 8 2.6421 -7.6675 0.0008 14 6 3.5485 -8.6577 0.0008 15 8 4.7282 -8.3966 0.0012 16 6 3.0946 -10.0946 0.0002 17 1 2.4867 -10.2883 0.8840 18 6 4.3160 -11.0218 0.0009 19 6 3.8369 -12.4625 0.1836 20 7 2.7794 -12.7732 -0.7700 21 6 2.0553 -11.8539 -1.4094 22 8 1.1729 -12.2318 -2.1507 23 6 2.2747 -10.3756 -1.2614 24 1 -0.4851 0.8401 0.0004 25 1 3.1244 -3.7313 0.8895 26 1 3.1244 -3.7314 -0.8906 27 1 1.3704 -5.4846 -0.8897 28 1 1.3709 -5.4840 0.8904 29 1 3.7599 -6.1472 0.8907 30 1 3.7601 -6.1481 -0.8893 31 1 4.8454 -10.9299 -0.9474 32 1 4.9819 -10.7487 0.8195 33 1 4.6740 -13.1430 0.0276 34 1 3.4570 -12.5901 1.1972 35 1 2.5901 -13.7073 -0.9507 36 1 1.3107 -9.8724 -1.1863 37 1 2.8108 -9.9998 -2.1329 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805492641.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:15 Heat of formation + Delta-G solvation = -171.162389 kcal Electronic energy + Delta-G solvation = -19602.915856 eV Core-core repulsion = 16276.571551 eV Total energy + Delta-G solvation = -3326.344305 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.99618 -40.90614 -38.17316 -37.24432 -34.98219 -34.59683 -34.21417 -30.71617 -28.40185 -27.62712 -26.29357 -24.35104 -22.74191 -21.85168 -20.25866 -19.58754 -18.77959 -18.44484 -17.86566 -17.43154 -16.99532 -16.89810 -16.39218 -16.04770 -15.99852 -15.26007 -14.99059 -14.93081 -14.48829 -14.18943 -13.94318 -13.82222 -13.14968 -12.93842 -12.92071 -12.81895 -12.62691 -12.43277 -12.37877 -12.18395 -12.13801 -11.81425 -11.51320 -11.49462 -11.14073 -10.91859 -10.36234 -10.08468 -8.68513 -8.38071 -6.14860 1.06288 1.26929 1.41167 1.42225 1.50763 1.53729 1.83291 2.27124 2.28575 2.96436 3.24910 3.34466 3.50339 3.60545 3.68193 3.85506 3.97924 4.02220 4.14746 4.16884 4.33245 4.39514 4.52763 4.61020 4.68299 4.70591 4.83454 4.95451 5.02061 5.12841 5.15839 5.39368 5.43866 5.81789 6.17337 6.27037 6.62754 7.04234 7.15096 8.70987 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.042116 B = 0.002384 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.668147 B =11743.171297 C =12228.258526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.015 3.985 3 Si 0.994 3.006 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.075 0.925 9 S -0.187 6.187 10 C -0.091 4.091 11 C -0.088 4.088 12 C 0.080 3.920 13 O -0.356 6.356 14 C 0.467 3.533 15 O -0.529 6.529 16 C -0.075 4.075 17 H 0.140 0.860 18 C -0.122 4.122 19 C 0.112 3.888 20 N -0.710 5.710 21 C 0.525 3.475 22 O -0.604 6.604 23 C -0.125 4.125 24 H 0.272 0.728 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.408 0.592 36 H 0.114 0.886 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.141 -25.693 2.519 27.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.816 3.184 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.688 4.688 8 H 0.093 0.907 9 S 0.041 5.959 10 C -0.240 4.240 11 C -0.126 4.126 12 C 0.005 3.995 13 O -0.272 6.272 14 C 0.311 3.689 15 O -0.418 6.418 16 C -0.094 4.094 17 H 0.158 0.842 18 C -0.160 4.160 19 C -0.011 4.011 20 N -0.361 5.361 21 C 0.312 3.688 22 O -0.486 6.486 23 C -0.164 4.164 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.112 0.888 35 H 0.245 0.755 36 H 0.133 0.867 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.819 -25.606 2.210 27.172 hybrid contribution 1.586 1.298 -0.172 2.057 sum 10.405 -24.308 2.038 26.519 Atomic orbital electron populations 1.70141 1.07670 1.28683 1.47822 1.26069 0.96042 1.03134 0.93733 0.85066 0.77927 0.76068 0.79365 1.18955 1.20027 1.18880 1.23020 0.94841 0.91911 1.59060 0.90717 1.84660 1.13240 1.00922 1.97068 1.23069 1.00711 0.96565 1.03674 1.21114 0.97181 0.89879 1.04440 1.23029 0.96454 0.76938 1.03073 1.86485 1.40726 1.16708 1.83327 1.24046 0.84190 0.89204 0.71455 1.90678 1.19524 1.85357 1.46275 1.21278 1.00128 0.86174 1.01838 0.84184 1.21871 0.95606 0.92948 1.05526 1.21645 0.90510 0.95791 0.93109 1.45522 1.36584 1.10045 1.43983 1.20083 0.80361 0.89371 0.78960 1.90781 1.34791 1.82081 1.40928 1.21603 1.03690 0.92464 0.98683 0.91909 0.91238 0.91373 0.90385 0.90211 0.90541 0.90822 0.90612 0.87612 0.86998 0.88793 0.75545 0.86734 0.87564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.41 13.22 21.65 0.29 -54.12 16 2 C 0.02 0.86 5.49 84.86 0.47 1.33 16 3 Si 0.99 43.53 29.55 68.60 2.03 45.56 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 5 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 7 C -0.54 -30.84 9.50 67.95 0.65 -30.20 16 8 H 0.07 4.08 7.80 -2.92 -0.02 4.06 16 9 S -0.19 -9.80 21.44 -56.49 -1.21 -11.01 16 10 C -0.09 -3.51 5.67 71.98 0.41 -3.11 16 11 C -0.09 -2.68 5.60 30.59 0.17 -2.50 16 12 C 0.08 2.05 5.47 71.98 0.39 2.45 16 13 O -0.36 -8.25 10.17 -51.45 -0.52 -8.77 16 14 C 0.47 9.32 7.23 71.23 0.51 9.83 16 15 O -0.53 -13.25 15.65 21.96 0.34 -12.91 16 16 C -0.08 -0.89 2.71 -11.41 -0.03 -0.92 16 17 H 0.14 1.10 8.13 -2.38 -0.02 1.09 16 18 C -0.12 -0.95 4.71 30.68 0.14 -0.80 16 19 C 0.11 0.35 7.17 86.49 0.62 0.97 16 20 N -0.71 -6.62 5.45 -467.32 -2.55 -9.16 16 21 C 0.52 9.01 7.71 87.72 0.68 9.69 16 22 O -0.60 -16.45 17.78 -3.03 -0.05 -16.51 16 23 C -0.12 -1.82 5.30 29.71 0.16 -1.66 16 24 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 25 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 26 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 28 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 29 H 0.08 1.89 8.13 -2.39 -0.02 1.87 16 30 H 0.07 1.86 8.13 -2.38 -0.02 1.84 16 31 H 0.08 0.75 8.12 -2.39 -0.02 0.73 16 32 H 0.11 0.76 7.90 -2.39 -0.02 0.74 16 33 H 0.11 -0.13 8.14 -2.38 -0.02 -0.15 16 34 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 35 H 0.41 3.08 8.80 -92.71 -0.82 2.26 16 36 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.11 1.57 8.09 -2.39 -0.02 1.55 16 Total: -1.00 -76.24 331.56 2.75 -73.49 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 0.26 Total: 8.37 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: 4.17 Total: -14.93 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: -2.26 Total: -63.29 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -0.23 Total: -38.19 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -9.80 SS G_CDS: -1.21 Total: -11.01 kcal Total: -76.24 2.75 -73.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805492641.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.677 kcal (2) G-P(sol) polarization free energy of solvation -76.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds