Wall clock time and date at job start Wed Apr 15 2020 11:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86793 * 119.99702 * 2 1 4 4 H 1.48502 * 109.47208 * 270.00352 * 3 2 1 5 5 H 1.48498 * 109.47509 * 30.00339 * 3 2 1 6 6 H 1.48501 * 109.47401 * 150.00614 * 3 2 1 7 7 C 1.38796 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99872 * 359.97438 * 7 2 1 9 9 S 1.76196 * 119.99960 * 179.97438 * 7 2 1 10 10 C 1.81002 * 99.99971 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47339 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47610 * 179.97438 * 11 10 9 13 13 O 1.45198 * 109.47387 * 180.02562 * 12 11 10 14 14 C 1.34229 * 116.99881 * 180.02562 * 13 12 11 15 15 O 1.20822 * 120.00200 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99848 * 179.97438 * 14 13 12 17 17 H 1.08997 * 109.70235 * 59.48365 * 16 14 13 18 18 C 1.53347 * 109.67368 * 180.02562 * 16 14 13 19 19 C 1.52915 * 108.67477 * 187.26786 * 18 16 14 20 20 N 1.45755 * 110.48805 * 309.24197 * 19 18 16 21 21 C 1.33362 * 124.10233 * 19.07670 * 20 19 18 22 22 O 1.21282 * 118.24236 * 177.75624 * 21 20 19 23 23 C 1.50173 * 123.50947 * 357.77733 * 21 20 19 24 24 H 0.96995 * 120.00203 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47117 * 59.99942 * 10 9 7 26 26 H 1.09000 * 109.47323 * 299.99918 * 10 9 7 27 27 H 1.09001 * 109.46905 * 60.00006 * 11 10 9 28 28 H 1.09000 * 109.47004 * 300.00307 * 11 10 9 29 29 H 1.09001 * 109.46762 * 60.00188 * 12 11 10 30 30 H 1.09004 * 109.47320 * 300.00841 * 12 11 10 31 31 H 1.09004 * 109.59985 * 307.01717 * 18 16 14 32 32 H 1.09001 * 109.60890 * 67.50734 * 18 16 14 33 33 H 1.08997 * 109.30705 * 69.55232 * 19 18 16 34 34 H 1.09006 * 109.29993 * 188.93492 * 19 18 16 35 35 H 0.96997 * 117.95339 * 199.07850 * 20 19 18 36 36 H 1.08999 * 109.40190 * 257.45573 * 23 21 20 37 37 H 1.08997 * 109.39984 * 137.71247 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4403 0.6999 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2019 -0.0012 10 6 4.0866 -2.9845 -0.0009 11 6 5.5958 -3.2362 -0.0021 12 6 5.8615 -4.7429 -0.0012 13 8 7.2937 -4.9818 -0.0017 14 6 7.6980 -6.2618 -0.0016 15 8 6.8822 -7.1530 -0.0016 16 6 9.1695 -6.5872 -0.0027 17 1 9.6415 -6.1574 0.8808 18 6 9.3618 -8.1085 -0.0029 19 6 10.8490 -8.4141 0.1792 20 7 11.6467 -7.6530 -0.7741 21 6 11.2122 -6.5661 -1.4131 22 8 11.9807 -5.9902 -2.1539 23 6 9.8225 -6.0168 -1.2642 24 1 -0.4850 0.8400 0.0004 25 1 3.6433 -3.4317 -0.8907 26 1 3.6441 -3.4313 0.8893 27 1 6.0394 -2.7889 0.8874 28 1 6.0380 -2.7894 -0.8926 29 1 5.4178 -5.1906 -0.8905 30 1 5.4193 -5.1894 0.8894 31 1 8.7949 -8.5489 0.8173 32 1 9.0173 -8.5206 -0.9514 33 1 11.1497 -8.1494 1.1929 34 1 11.0198 -9.4792 0.0225 35 1 12.5502 -7.9560 -0.9551 36 1 9.2287 -6.2928 -2.1356 37 1 9.8687 -4.9305 -1.1884 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805492642.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:17 Heat of formation + Delta-G solvation = -147.212709 kcal Electronic energy + Delta-G solvation = -19642.781654 eV Core-core repulsion = 16317.475885 eV Total energy + Delta-G solvation = -3325.305769 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.25748 -40.15533 -37.34755 -36.49712 -33.99308 -33.44137 -32.47830 -30.21169 -27.23120 -25.85449 -25.44194 -23.79883 -21.53265 -21.06127 -19.75938 -18.10168 -17.80804 -17.40121 -17.05560 -16.60561 -16.28631 -15.68999 -15.03351 -15.02282 -14.82787 -14.45147 -14.17860 -13.90311 -13.36713 -12.88468 -12.86600 -12.56724 -12.41406 -12.28303 -11.71040 -11.68075 -11.55362 -11.28235 -11.13292 -11.01795 -10.97310 -10.43951 -10.38055 -10.13310 -9.84571 -9.60466 -9.04576 -8.64212 -7.00907 -6.32104 -4.05757 1.88374 2.19300 2.30364 2.76657 2.97234 3.27801 3.42390 3.51981 3.89095 4.04057 4.14609 4.15122 4.27983 4.60029 4.61131 4.73064 4.76140 4.96683 4.98529 5.06701 5.07393 5.10607 5.25754 5.32163 5.34384 5.52620 5.62280 5.68638 5.99217 6.24968 6.28398 6.28744 6.51294 6.80266 7.48360 7.73320 7.91464 8.40494 9.13233 10.77271 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.037519 B = 0.002512 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.103001 B =11145.482677 C =11716.799944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.092 3.908 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.237 1.237 7 C -0.505 4.505 8 H 0.089 0.911 9 S -0.206 6.206 10 C -0.084 4.084 11 C -0.102 4.102 12 C 0.072 3.928 13 O -0.352 6.352 14 C 0.466 3.534 15 O -0.503 6.503 16 C -0.084 4.084 17 H 0.119 0.881 18 C -0.124 4.124 19 C 0.111 3.889 20 N -0.723 5.723 21 C 0.525 3.475 22 O -0.550 6.550 23 C -0.127 4.127 24 H 0.271 0.729 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.402 0.598 36 H 0.108 0.892 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.133 -17.352 1.769 28.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.161 1.161 7 C -0.653 4.653 8 H 0.107 0.893 9 S 0.022 5.978 10 C -0.233 4.233 11 C -0.140 4.140 12 C -0.003 4.003 13 O -0.268 6.268 14 C 0.308 3.692 15 O -0.391 6.391 16 C -0.104 4.104 17 H 0.136 0.864 18 C -0.161 4.161 19 C -0.013 4.013 20 N -0.376 5.376 21 C 0.312 3.688 22 O -0.428 6.428 23 C -0.167 4.167 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.237 0.763 36 H 0.126 0.874 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 22.538 -16.220 1.433 27.805 hybrid contribution -0.752 -0.489 0.025 0.898 sum 21.786 -16.710 1.458 27.495 Atomic orbital electron populations 1.69933 1.05922 1.27794 1.48027 1.24794 0.94527 0.99049 0.93281 0.86671 0.81728 0.83181 0.79770 1.19305 1.20034 1.16134 1.22115 0.86940 0.97506 1.58695 0.89302 1.84184 1.11840 1.04208 1.97555 1.22946 0.95944 1.00177 1.04222 1.21337 0.95984 0.92198 1.04494 1.23272 0.75984 0.98133 1.02899 1.86474 1.28989 1.28197 1.83187 1.23335 0.91879 0.81247 0.72723 1.90692 1.55456 1.47980 1.44969 1.21170 0.89609 0.98082 1.01493 0.86358 1.21842 0.95546 0.93134 1.05615 1.21425 0.90540 0.96536 0.92831 1.45516 1.18447 1.28819 1.44775 1.19956 0.89670 0.79836 0.79353 1.90803 1.55631 1.57996 1.38368 1.21668 0.92915 1.03890 0.98251 0.91900 0.91013 0.90978 0.90211 0.90173 0.90884 0.90889 0.88262 0.89756 0.91006 0.89646 0.76280 0.87424 0.86285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.48 13.97 55.49 0.78 -25.71 16 2 C 0.09 2.66 5.50 -17.43 -0.10 2.57 16 3 Si 0.86 21.26 27.74 -169.99 -4.71 16.55 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.24 -5.71 6.74 56.52 0.38 -5.33 16 7 C -0.51 -14.44 10.04 30.94 0.31 -14.13 16 8 H 0.09 2.70 8.03 -52.48 -0.42 2.28 16 9 S -0.21 -4.89 19.41 -107.50 -2.09 -6.98 16 10 C -0.08 -1.56 5.67 37.16 0.21 -1.35 16 11 C -0.10 -1.48 5.60 -26.73 -0.15 -1.63 16 12 C 0.07 0.92 5.47 37.15 0.20 1.12 16 13 O -0.35 -4.10 10.17 -39.26 -0.40 -4.50 16 14 C 0.47 4.81 7.23 36.01 0.26 5.07 16 15 O -0.50 -6.50 15.65 -18.75 -0.29 -6.79 16 16 C -0.08 -0.56 2.71 -91.55 -0.25 -0.80 16 17 H 0.12 0.60 8.13 -51.93 -0.42 0.17 16 18 C -0.12 -0.61 4.70 -26.60 -0.13 -0.74 16 19 C 0.11 0.34 7.17 -4.49 -0.03 0.30 16 20 N -0.72 -3.96 5.45 -61.39 -0.33 -4.30 16 21 C 0.53 4.58 7.71 -11.87 -0.09 4.48 16 22 O -0.55 -7.26 17.78 5.56 0.10 -7.16 16 23 C -0.13 -0.94 5.30 -28.10 -0.15 -1.09 16 24 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 26 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 30 H 0.07 0.92 8.13 -51.93 -0.42 0.49 16 31 H 0.10 0.48 7.90 -51.93 -0.41 0.07 16 32 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 33 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 35 H 0.40 1.83 8.80 -40.82 -0.36 1.47 16 36 H 0.11 0.78 8.09 -51.93 -0.42 0.36 16 37 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 328.87 15.07 4.96 4.96 Total: -1.00 -34.70 328.87 -7.32 -42.02 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -5.41 Total: -1.90 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 0.09 Total: -6.19 kcal Atomic # 7 Polarization: -30.44 SS G_CDS: 0.44 Total: -30.00 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.59 Total: -18.45 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.71 Total: 16.55 kcal Atomic # 16 Polarization: -4.89 SS G_CDS: -2.09 Total: -6.98 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.70 -7.32 -42.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805492642.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.198 kcal (2) G-P(sol) polarization free energy of solvation -34.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds